Dnoa000652.1
Basic Information
- Insect
- Dufourea novaeangliae
- Gene Symbol
- PRDM10
- Assembly
- GCA_001272555.1
- Location
- NW:102012-106257[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0089 0.49 10.1 0.1 2 23 521 542 520 542 0.96 2 11 0.0012 0.068 12.8 0.3 3 23 556 576 554 576 0.95 3 11 0.0066 0.36 10.5 3.8 1 23 593 615 593 615 0.91 4 11 0.0043 0.24 11.1 2.6 2 23 624 645 623 645 0.96 5 11 9.3e-05 0.0051 16.3 0.2 1 23 652 674 652 674 0.98 6 11 0.0017 0.096 12.3 2.2 1 23 681 703 681 704 0.95 7 11 0.0002 0.011 15.3 2.6 1 23 709 731 709 731 0.98 8 11 1.7e-05 0.00095 18.6 4.1 1 23 737 760 737 760 0.96 9 11 0.0012 0.067 12.8 1.7 1 23 793 816 793 816 0.97 10 11 2.7e-05 0.0015 18.0 2.4 1 23 838 861 838 861 0.97 11 11 0.0027 0.15 11.7 3.4 3 23 899 920 899 920 0.98
Sequence Information
- Coding Sequence
- ATGGATCCAAGGGGCCCTCCTGAGGGGGCCCCTGTTCATTCCTTTGAAATTCTAAACATTGATAAAGTGTCTGACACTTCAGTGAATTGGCCTGCTGATCATTCACTCCATTCATCAATGTGTGAACAGcctaaaaaaatgaataacaaattattatttttaactgTGGAGTACGTGGAAGATCAGACTCGAGAATATCCTAGACTGTTCCCAACATACGAACAAGTTTCCTTTTCCCCCAGAGCTTCTTCTCCACTTTCTGACTTTGAACACCGTGTTAGTCCTCTTGACCCAAATATGAGTTCAGCTGCTAGGTATTCACCTACTCCTGTACAACTTCCACCATCTCCTTTTCATAATGCTGTTGTTGTTTTACAAGGTCCATCTTCTCCTTTAATATCCCCCCCCGAGTCAAATGAAAGAACATCTGTTAACTATGTTTCTCAGTTGACGCATCCAATAGATGCACAGAGTGTACAACAGACAGATAATAATCCTGACTTTGTTGCCAATGAGAATGAAGAACAGTTGGTCCCTGGTGTTAGTAGTGAATTGATTCTGATGCAAGaaactaatGCTGGATTAGTATCATCAGCAACTCCATTGATGCTTACAGCAATTCCTAGTACAGACTTTGCATTAAGTAGAGATTTTCTTGTTATGCAAGATGATCAGATAAACGTTataaattcgtttaaaactCAAAATATTGATGTAGATGATGCTACTTTATCATCTGCTGCAGAAAATTCAAACAAAGAGAATGAAACAAACGCTTTGGTTGAGCTAAAGGGACAAGAGATTAATCAGATATTAGTGAATACGGAGGTACAGAAGGATAGTGAAAAGCAGAATATTAGACGTTCCAAACGTCGTATAAACGATAAAACAGATTCTTgTTGTGACGAAGGTGATGATGTCTGTACTGGAGATAATTGTACATCACATAATGTATGCACAATAGCAGATCAACCTGTACCATCACGTGCTATAGCTACACTGCCAGGGTCGTATCTAtccataaataaattgtcTGAATCCGAAATCATATTAGGTGGATCCGATTATGGAGTATTTGCAAAACGCTATATACAAAAACGTACTCAATTTGGTCCAATAGAGGGCATTTTGTACCCTTATGATGGTTctccatttaaaaatgaattgcCACTACTCTACGAAGCCGAAAACgagcaatttttaaaagtagaCGTTTCAAATGAAAATACTTCAAATTGGATGCGTTTCGTCAGACCTGCATTGACGTATGAAGAACAAAATGTAGTAATTTGCCAACAACGCGATGGAATAGTATTTCTTACAACAAGGCATATTGTGCCAATGGAAGAATTAAAGGCTGGTCCTAGCACTGATTATGCAGTTCGTAGGAACTTAATAGTACTGAAACCTGTGCAAGAAACTAAGGGTGATAAAGAAtcaaaaaatcaattattttcccGGACACGATTAGAAGATAATCAGTCTCGTCGCATGAAAGTCTTTCACggtataaatttaaaagaaaaggaaaattcGAGACAAAATAATTCGAAGGAATGGAAATGTTCCGTTTgcagtttaatttttagaaagcCATTGCTGCTTAATTTACACACTCTTGTTCATGGTactgataaaataaaaacgaagatTTCGAACACTATTTGTCCACAGTGTGGACTGCGCTTtcagaaacagaaagaattaGTTAATCATGTCTCACAACACGGTagatttacttttaaaaaaaaaaacagattgacTCCTTTGTCTACATATAAGTGTTCGATGTGCTATAAACGTTTTGCTACAAAAGTACGGTTACAACAGCACTGTTTGGTGCATGGTGCTGAAGACCAAAAACCACTGCCATGcaacatttgtttcaaaagatttatgaataattcagCCCTGTCTTGTCATTTAAAAACACACAGAGaaaataaacaagtgTTTGAATGTCCAATGTGCCGAGAACTATTTAGTCAGAGCATCACATTGAAAGATCATATTGAAACTCATAAGAAAGAAGACGATACTTTCAGCTGTCCCTACTGccaaagaatatttatgaaatattccgTTATTCGCAAGCACATTAGAGCGCATCATTGCGAAAGAAAACACAAATGTCAAGTCTGTACAAAACGCTTCGCTACAGTTGACAAATTACAAATGCATCTGCTGAAACATTCTGATCATAGagAATTTCATTGTGCCAATTGtggaaaacaatttaaaagaaaagataaatTAAAGGAACACATGACGAAGTTGCATAATTCACAAACAGCTACCGAAGAACAAATGTCGCAAGTTACACAGACAAAGAAATTTGTTCCGAAGGTAAACCCTAATGATTACAATCGCTTCATTTATAAATGTCATCAATGCCTGGTGGGCTTTAAACGAAGGGGAATGCTTGTTAATCATTTGGCAAAACGTCATCCTGATGTTGCACCAGAATCTGTTCCAGAATTGAACTTGCCTATCTTACGCCAAACAAGAGACTATTACTGTCAATATTGTGACAAGGTCTATAAAAGCAGCAGTAAACGGAAAGCACATATCATGAAAAACCATCCGGGAGCTGCTTTACCACCGAGTAATAGGCAAAAGGAGTCCGATTATTCTGATCTACCAAATCCAACGTTTAGTCAAACAGTTGGTAGTGTTACAACTACACCTCAGGGTTGTCAGTGGTGTCACAAACAGTATGCTAGTAAAGCAAAGTTGTTACAACATCAACGTAAGAAGCACTCTAATATGTTGGAACCCGCTGACCAAGTACCACGGACGCGCAGCCGACAACCACAGAATCAAAATCAACCCCCTATACTTATCGAAGATCAGTTCGTGTTATCCGAGTATATTCAAGCGTGCGACACGAATTCCGAGTTCTTTAAGCCGAAAGTAATCAAAATATCCGAGGATGTTGATCTCATAAGTAACGGATTGGAACTTGTCGGGCAACAGTTTGTTCGTATGCGAGACATACGTTGA
- Protein Sequence
- MDPRGPPEGAPVHSFEILNIDKVSDTSVNWPADHSLHSSMCEQPKKMNNKLLFLTVEYVEDQTREYPRLFPTYEQVSFSPRASSPLSDFEHRVSPLDPNMSSAARYSPTPVQLPPSPFHNAVVVLQGPSSPLISPPESNERTSVNYVSQLTHPIDAQSVQQTDNNPDFVANENEEQLVPGVSSELILMQETNAGLVSSATPLMLTAIPSTDFALSRDFLVMQDDQINVINSFKTQNIDVDDATLSSAAENSNKENETNALVELKGQEINQILVNTEVQKDSEKQNIRRSKRRINDKTDSCCDEGDDVCTGDNCTSHNVCTIADQPVPSRAIATLPGSYLSINKLSESEIILGGSDYGVFAKRYIQKRTQFGPIEGILYPYDGSPFKNELPLLYEAENEQFLKVDVSNENTSNWMRFVRPALTYEEQNVVICQQRDGIVFLTTRHIVPMEELKAGPSTDYAVRRNLIVLKPVQETKGDKESKNQLFSRTRLEDNQSRRMKVFHGINLKEKENSRQNNSKEWKCSVCSLIFRKPLLLNLHTLVHGTDKIKTKISNTICPQCGLRFQKQKELVNHVSQHGRFTFKKKNRLTPLSTYKCSMCYKRFATKVRLQQHCLVHGAEDQKPLPCNICFKRFMNNSALSCHLKTHRENKQVFECPMCRELFSQSITLKDHIETHKKEDDTFSCPYCQRIFMKYSVIRKHIRAHHCERKHKCQVCTKRFATVDKLQMHLLKHSDHREFHCANCGKQFKRKDKLKEHMTKLHNSQTATEEQMSQVTQTKKFVPKVNPNDYNRFIYKCHQCLVGFKRRGMLVNHLAKRHPDVAPESVPELNLPILRQTRDYYCQYCDKVYKSSSKRKAHIMKNHPGAALPPSNRQKESDYSDLPNPTFSQTVGSVTTTPQGCQWCHKQYASKAKLLQHQRKKHSNMLEPADQVPRTRSRQPQNQNQPPILIEDQFVLSEYIQACDTNSEFFKPKVIKISEDVDLISNGLELVGQQFVRMRDIR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00232789;
- 90% Identity
- -
- 80% Identity
- -