Dnoa000054.1
Basic Information
- Insect
- Dufourea novaeangliae
- Gene Symbol
- su(Hw)
- Assembly
- GCA_001272555.1
- Location
- NW:172881-175858[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0012 0.067 12.8 0.1 1 20 26 45 26 47 0.95 2 13 6.8e-06 0.00038 19.9 0.8 1 23 124 147 124 147 0.94 3 13 1e-05 0.00057 19.3 1.0 3 23 155 176 154 176 0.97 4 13 4.8e-05 0.0027 17.2 4.9 1 21 182 202 182 207 0.95 5 13 1.7e-08 9.4e-07 28.1 1.8 1 23 214 236 214 236 0.98 6 13 8e-06 0.00044 19.7 1.6 2 23 246 267 245 267 0.97 7 13 4.9e-05 0.0027 17.2 0.7 2 23 274 295 273 295 0.97 8 13 1.8e-05 0.001 18.6 3.6 1 23 301 323 301 323 0.98 9 13 1.1e-05 0.00062 19.2 2.1 1 23 329 351 329 351 0.95 10 13 9e-06 0.0005 19.5 1.0 1 23 357 380 357 380 0.94 11 13 4.3e-05 0.0024 17.4 0.5 1 23 386 408 386 408 0.94 12 13 2.2e-08 1.2e-06 27.7 1.3 1 23 414 436 414 436 0.99 13 13 3.3e-05 0.0018 17.7 1.6 2 23 443 465 442 465 0.94
Sequence Information
- Coding Sequence
- ATGTCCACTGAATCTGAATCTACTGATATAAATGTTATTGCTCATGGTGATCagataatacaaattataacaGATTATGAATGTGTAACATGTCGTCGAGTCTTTCAGTCCCAGGATATGTTGAAGGAACATTTAGACATATGCAGAGAAGAAGATGACTCTATGAATATGATAGAACTCAGGTATATAGAGAATGAGTCGGATGATGATGGTAGGGATGATAATTCAGAACATGTTGATGACGTCAATCATGAAGATTCTAATTCTAACAATGCGAAAACTAATCACAAACCAACAATTATGCCTGTACCTGAGTCTCAGTGTCATTGCTGTGCAGAAGATATAGCTACTGCACACAGCGGGGGTGAACATAAGTGTGTGGAATGTGGCCTatcatttaagaaaaaatcatCTTTAGATAGACACATTGTAGTAGTTCACTGGTACTATGATACTTCTCTCTGTAACGAATGCGGAGAAACATTTAATAGTAAGAACGCATTAAATAAACATCGTTACACTACCCATCAGGATCAAAGGCTTTTTAAATGCGAGCGTTGCGATACTTATTTTTCACGAAGCTACCATTTAAATAGACATATTATGCAGTCCGGTTGTCATGGTAATATCCTTACTACATTTAGTTGTCAAGTTTGTCAAAAAGTTTTCACACGTAAGGATAATTTACGCGAACATTTACGGACACATGCTGGAAACGTTCAAAGGCCTAAGAAACGTTGTAAATACTGCCCTAAGGAATTTCCCACTAGCCATCAATTACTGGTTCATGAACGTGTGCACACAGGAGAGCGACCACTTCAATGCGATCTATGCCCAAAAACGTTTATGTCAACTCTAGCATTGAAAAAGCACAGGCGCGTGCATACGGGAGAAAAACCATTTGAATGTCAACATTGTAAGAAGAAATTTGCTGCCCGTGAAACCTTGAATCGTCACGAGAGAACCCATACCGGAAATAAACCTCATGTCTGCCAGTATTGTGAAAAGTCATTTATTCAAGCGGCGCAATTGAGGGCACACATATTTCATCATACTGGGGAAAATGGTTTCTATTGCGATGTATGTGGAAAAGTGTTCAATCGCAAGGCTCGTTTGAACGTTCATAAGAAGTTCGTTCACGAAGGCGCGACTCCGTTCGCGTGTGAAGTGTGCAAAAAGAGATTCATAAGAAGAGAAGATCTCGTTAAACACTCCTTACTCCATACGGGCATTAAACCATTCAAATGCGACAAATGTGAAAAACCTTTCTCCACCAAATCTTCTTTGCAAGCTCATTTGAACACACACAGAAGAGAACCACCGCAGTCCTGTGTTGAATGCAACAGAGTGTTCATTCGGCAAGATTGTTTGATGAGGCACATAAAGGCAAAGCATCGTGAATTGTTAGAAGATGTTATGAACGAGGtggaaaagaaacatttacaaaCGCAACTGTATAATATTGCAACGCTTGCTGCAGAAAAGACGAAAAAGGGTGAATCCAGTAAGCTCTGTACCGACGATTTATTGAAAGCTATCTCagatttgttaaaaatattgatcgATGACGATACTCTTCAGCTATTTGGTTGGCCTGAAGCGCCTATTCAAGATATCCTAGAGGCCGTGATTAGAAGGTGTGGACATTCGCCGTTAACGTCAGATAGCAATTTACTCTTTACTGAACGGCTAAGAGAAAACGTGAAACTTCTGTTCACCGTTGTTATAGAGGACGATACAGTGAAGTCTCTCTTAACAACGAAAACCGTAGATGATGTCATTCTACACGTTCTAGAACTTTCAAGAGAATACACACCAAGTACGTAG
- Protein Sequence
- MSTESESTDINVIAHGDQIIQIITDYECVTCRRVFQSQDMLKEHLDICREEDDSMNMIELRYIENESDDDGRDDNSEHVDDVNHEDSNSNNAKTNHKPTIMPVPESQCHCCAEDIATAHSGGEHKCVECGLSFKKKSSLDRHIVVVHWYYDTSLCNECGETFNSKNALNKHRYTTHQDQRLFKCERCDTYFSRSYHLNRHIMQSGCHGNILTTFSCQVCQKVFTRKDNLREHLRTHAGNVQRPKKRCKYCPKEFPTSHQLLVHERVHTGERPLQCDLCPKTFMSTLALKKHRRVHTGEKPFECQHCKKKFAARETLNRHERTHTGNKPHVCQYCEKSFIQAAQLRAHIFHHTGENGFYCDVCGKVFNRKARLNVHKKFVHEGATPFACEVCKKRFIRREDLVKHSLLHTGIKPFKCDKCEKPFSTKSSLQAHLNTHRREPPQSCVECNRVFIRQDCLMRHIKAKHRELLEDVMNEVEKKHLQTQLYNIATLAAEKTKKGESSKLCTDDLLKAISDLLKILIDDDTLQLFGWPEAPIQDILEAVIRRCGHSPLTSDSNLLFTERLRENVKLLFTVVIEDDTVKSLLTTKTVDDVILHVLELSREYTPST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01071142; iTF_00966150; iTF_00184080; iTF_00862041; iTF_00183421; iTF_00862727; iTF_00865474; iTF_00762703; iTF_00763375; iTF_00024753; iTF_00866162; iTF_00864782; iTF_00864118; iTF_00861342; iTF_00863412; iTF_00860568; iTF_00866846;
- 90% Identity
- -
- 80% Identity
- -