Basic Information

Gene Symbol
stc_2
Assembly
GCA_951804985.1
Location
OX638131.1:103695992-103721334[+]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 2 3.7e+04 -4.8 2.1 14 19 612 617 612 617 0.88
2 11 0.19 3.6e+03 -0.9 0.3 4 10 1512 1518 1511 1518 0.95
3 11 2.9e-06 0.054 14.5 15.3 3 19 1525 1541 1524 1541 0.92
4 11 0.00039 7.2 7.8 13.4 3 19 1579 1595 1567 1595 0.89
5 11 6e-07 0.011 16.7 16.6 1 19 1635 1653 1635 1653 0.97
6 11 0.00012 2.2 9.4 16.2 4 18 1701 1715 1694 1716 0.86
7 11 0.051 9.4e+02 1.0 11.2 1 11 1756 1766 1756 1777 0.94
8 11 1e-09 1.9e-05 25.6 15.5 1 18 1783 1800 1783 1801 0.97
9 11 2 3.7e+04 -6.9 7.9 10 18 1848 1857 1840 1858 0.76
10 11 2e-06 0.038 15.0 12.2 1 16 1894 1909 1894 1920 0.90
11 11 7.7e-07 0.014 16.4 13.7 1 19 1927 1946 1927 1946 0.96

Sequence Information

Coding Sequence
ATGAACGATCTCAGCATGGGTTTCAAACATGCCATTCTTCAACGTCTGCAGAGTTTCGAGGAGTCTCCAGCTAAATTGCacgcagtagcagcaacaattgATTCCAGATCAGCAGCAGCAAATATGCGCGGATCTGCAACAGCAACGTCTTTAAACATGCAACATAGAGAATCCTTTAATTTTGATTCAGCATCTACAATATATCAGGGAACAACACCAATATATCAACGAACAACACCAACATATCAGCGTTCATCACCAACATATCAGCGTTCATCGCCGTATCCGCATTCAACACCAACATATCAACGTTCATCAGCAACATATCCaattgcagcagcaacatttaaAACAGCACCAGCAACATATCAAAGAAGAACTTCCGCTTTAGAAGGCGCCTCAACAGTCGCACCATCAACCGCCGCATTAAAACTTCCAGAATCGCCCACTATTAAAAGAGCTGCACCGATTATCAAACACGAAATGACAACATTACCcaaagcaacagcaacattgcCGCAAACATCACCAGCAACAATACAAACGAGCAGCAGttgtagcagcaacagcagtagcCCAACCGGACAACAGCCACATATCACAGATTTTAGCATTAATCGCATTTTGGGCTGCACAACTGGCGGCACAAAGTCCAAAAACCGAAAAACTCCTCACAGCACATTACCTGCAACATATCCAGTCCACAATCTTGATATTCTCGATCTCTCCAAGTCCAGCGCAACATCCCCACCTACAACACCCACTTATGTCACATCCTATGCTGCTTTTCATCAGGATTTTCTggctgctgccgctgctgcaAATGCCACCAAATTTTATGCACATTTCTTTCCGCACATGTTTCCCGCCACATATCCTGGCAGTTTTCCAGCAACACCGTTGACTTCTTCAACAAACACCTATGCCAAACGTTACTTTGCACCCTATGTTCTACAAACTTCCGCAGCAACATCTTCCGTTTCAAATGCAACCTGCTCAATACCATCTACATCCTGTACAACATCATCATCGCAATCGTCGCATTCTGCCGAAACTTCAACTCGTGAGGTTCACAAGTCTGTATGTTCTCGTAATTGTTCCGTCGATTGTTCGCGCAACTTTAAACATTTCTCGGATAAAACTTCAGTTTCTTCGAGTTTTCTCAAGACAAGAGCCTCTGCGGATATTACTTTGCACTCTGCGACCGCTATTACGCTTTCTACTTCTTTAACCACTGCGAAGAACGTCACATTGGATTCATTAACAAGTCCGCTGGATCCATTGATGGCAAATTATTCCGGCTTGAATGCGGAGGAAATCAGTTACAAGTGCAGAATATGTGATAAAGTTTTCGGTTGCTCGCAGACATTGCAGGCTCACGAGCGCACCCACAAGTCTCCCCGTTACGAATGCACCGACTGCGGCAAGGGCTTCTCGCAGCTGCGCAACTACAAATACCATTTGTCGGTGCATCGCGGCACAAAAGAGTTTGCCGCCGAGTGTCCCGAGTGTGGCAAGACCTTTAACGACAAGGGCTACCTTAGCAGCCACATGAAAATACATCGCAATAAGAAGGAGTACGAATGTCCGTACTGTCCGAAGTCGTTCAATCAGCGGGTCGCCTTCAATATGCATGTGCGCATCCATACGGGCGTCAAGCCGCACAAGTGCGTCGAGTGTGGCAAACGCTTCTCGCGGAAGATGCTGCTGAAACAACACATGCGAACGCACAGCGGCGAGAAGCCGTATCAGTGTTCGGTGTGTGGAAAATCGTTTGCCGATCGCAGCAATATGACGTTGCACCATCGATTGCATTCGGGCATCAAACCCTTCAACTGCCCCATCTGCCCGAAGGCCTTCACCAAGAAGCATCACCTGAAGACGCATCTCAATTATCACACCGGCTGCAAGCCGTACGTCTGTCCGCATCCGAACTGCAACCAGGCCTTTACGCAGTCCAGCAACATGCGCACGCATGCCAAGAAATGTCAATACAAACCGTTACAATTGTCGTTTCCGGCGGCGCACGCCATGGCAACGACGACGACCTCTGCCGCAGCGGCAACTACTGCAACAACAACGGCAACAAACAGTTATGCGCATCAACACATTGCAGCGCTGCATCACGAGCATCATTCTTCggctgcagcagcagcactaTCGGATGGTATTCGTTTATTGTCGTCCTCAACTTTTGGTGGCCAACAACAAACGTTGCCATTTCCGTTAGCTCAACAACGGAATGTACGTGGGCAGAACTACAACAAAGTACCTGATACTGAGCACAAGCAACGGCAAGTGGCCAATTTTGGCCAGAACCAAGAGGCGACTACCTTGGATCCGATTGAGTTCAGAGGAGGAGAAACTGATTTGTGTCAGCGACTGACAACGACATATCGTCGTCATCAAACGTTAATCATCAACGAGTGGAACTTtcaGTGCATTCAACAACAACACTCAACGTCAGCGTCGCCGCATCGGTCGCGTTGGCGCGTGCCGCGTCTAAACAGTCGCAACAAACTCAAAACAAAGCGGCTGCACAGCAACATGTCTGCCGAGTCGACACCGACCACGAAACTTTGGCAGGCTTATATAGCGCAGCACGCGGCAGGCGTTGATTTGGGCGCCACCGCAGTAGCCGGCTcaaaaagcagcagcagcagctccaACAGCGCAGCAAACAACGAAAATAGCAGCAACAACCTAAATAACATCAACAGCAGTCACAACAACTACGTCAACTTTAATCAGTTCATCATGCAGCACAATTTCATTGGCGGCGCCACCAACGACGGCAGCGCAACCGCCAGCAACTTTGATGCCGCGCTCTTTGGCgttggcagcaacagcagcaacaatgtCACAACACCAACAAACGCTAATAATCTTTTTGGCAACAGCAACAATCTCGCCTCATCGCTTTTTCCCtacaacaacaatgaaaataacagcaacaacataaacactgccaacaacagcagcagtagcGTCGTCGGTGGCGGCGgcggcaacaacagcaacagtttCTATATGAATGGCAACAActataacaacagcaacaacaacaataatgctGCCAACTTTTACGATAATCTTTATACGCCATTCGGCGCTGGCACCACTTACTATGCCAATCCTTTTGCCACCGGTTTTGATTTTGCCACCGCCTCCAATTTGCAGGCAACGGCGCCAGAGTTTGTGCCGCGTTTTGGTAGCCTTTCGTTGAGCGCAGGCGCTGGCGTCGGCGACACTTTATTGTTGGAGGCGCCGCACAAACAGCACAGCACAGAGAACagtttgaatttaattgaaactaataaaaatgttgctgcgccaacaacaacacaaacaattacaacaaacacAGAGGGTGCTGTTGCTGATTTTGAAATTTCCACTTTTACAACTGCCGATGGCGCTGGCGGCGATAGTCGCGTCacgcacaacaacaacaataataaatcatCAAAATCTAGCAACATGTCGCGTGGTGGCACAGGCGCCACCAGCAAACAGTctaacaacagcaaaaacaatagCAGAAAATCAAATGGTTTTGTTTACGATGCGCAGCGCGACTCTTTTAATGCACGCGACTCTACAAAATCACGCGACTCTTTACAATCACGCGACACACGCGACTCTTTAAATACACGCGACTCTTTAAACACACGCGACTCGTTGAACACACGCGACTCTTTGAACACACGTGACTCTTTGAACTCACGCAACCCCTTTAAAACCGATCGTGACACTTTGTCTTCACGCGATCGCGAACGTGATTCTTACAACATGCGCGATCGCGACTCCTTTAACTCACGCGATCGTGACTCTTTAAACCCACGCGATCGTGACTCTTTGAACACTCGTGATCGCGAACGCGATTCTTTGAACGCGCGCGATCGCGATCGTCGCTTTGCCAATGGCAGTGGCCGTCGCTCGCTCGACTATCATCAGCACGAACGCGGCGAAGACCGCAACGAACGGGGCGGCAATCATCAACGTGGCCACAATCAACAcaaccaacaacagcaacatcagcGTGAACGCTACGACAATAATCGCAGCAACAAACGACGCGACGATTGGAATCGCAATCGTGATCGCATCAATGGTTATCGCGTCGACGAAAAGTATTGCGCCTCTGACAATGGCAAAGAGTCGCCTTCGCTGTCATCGCCCGAGAAGAAATCACCCAAAAAATCAGCTTCAACAACACAGCAACCAGCACCAAACAATGcagacaatgaaaaattatcgCAACGCGAGAAACTAATGCGCGACATTGAGACGCGTCGCCTCGAGTGCTTGGTTTGCGTTGAACCCATTAAAGCGCACAATGCTGTCTGGTCCTGCAACAATTGCTATCATATTTTACACTTGCAATGCATCATAAAATGGGCGTCGAGCTCCAAGTCCGACGATGGCTGGCGCTGTCCTGCCTGTCAGAATGTGGTCAAAGATGTGCCACGCGATTATTATTGCTTTTGCGGCAAACAACGCAATCCTACATATACACGTCAGGATATAGCGCATTCTTGTGGCGAGTTATGCGCACGTGTTGAAGGTTGTACGCACGCGTGCACCTTGCTATGTCATCCGGGCCCATGTCCGCCGTGTCAGGCTCAAGTGCAGCGCGCCTGTGGCTGCGGCAAAACACAGAAAATCCTGCAATGCTGCAGCAAGCAGGCCATTGAGTGCGACGAAACTTGTGGCAAGCTTCTCAACTGTGAGCTGCACACGTGTGAGTCAAAATGTCATGCGGACAAGTGCGCACCCTGCAGTGCACAAGTCGCACAACAATGCCACTGCAGCAAACAGCAGCGTGAGGTTGCATGCACACGCGACTCACACGATAAGACGCGTTATTCATGCGGCAAGCCATGCGCGCGTGATTTGAGTTGCGGCAATCACAAATGCAAAGATTGTTGTCATGCGGGCGAGTGTCGCGTCTGCAAATTGAGTCCCGCCGTTGTGAGCAGTTGCCCCTGTGGCAAATTGCCGCTGGTAGAGGGCACACGCAGCAGCTGTCTCGATGCGATACCGCTTTGCGAGGGCATTTGCGGCAAGACGCTGCGTTGCGGCAAGGCAGCGCATCCACATCACTGCACCAGTCGCTGTCATGCGGGCAATTGTCCGCCCTGCAATAAACAGACCGCAGTCAAATGTCGCTGCGGCCACATGGATCAACAGATTAAATGTCGCCAGCTGTCGACGCGCGCCGATGATGCGCGCTGCAAGAAACGTTGCGTCAAGAAGCGTTCCTGCGGCAAACATAAGTGCAATCAGGAATGTTGCATTGACCTCGATCATATTTGTCCGTTGCCGTGCAATTATACGCTATCCTGTGGCAAGCATAAATGCGATCAGCCCTGTCATCGTGGCAATTGTCCGCCCTGCTATCGCAGCTCGTTCGAGGAGCTCTACTGTGAATGTGGTGCTGAGGTCATTTATCCGCCTGTGCCGTGTGGCACTAAGAGGCCCGTTTGCAAGCGTGCTTGTACCCGCACGCATCCGTGCGCGCATGCGCCACAGCATAACTGTCACGCGGCTGCCACGTGTCCGCCGTGTATGTTGTTCACCACACAATGGTGCTTTGGCCAGCATGAGCAGCGCAAAACCATTCCGTGCTCGCAGCAGAGCTTTAGCTGCGGTTTGGCGTGCCAGCGCCCGTTGCCGTGTGGCCGTCATAAATGCGTGCGCGCCTGTCATGAGGGCGCTTGTCAGCTCGTTGCCGGCGAGCAGTGCAAACAGAGCTGCACCGCGTTGCGTGCGGCATGCGGGCATAAGTGCATGGCGCCGTGTCACGATGGCGCCTGTCCGGAGACGCCATGCAAGGAGTTGGTCGAAGTTCAGTGCGATTGTGGCAACCGTAAACAGATGCGTTCGTGTCACGATTTGGCCCGTGAGTATAGTCGCATCGCCACCGCACAGCTAGCCTCTTCCATGGCGGAGATGCAACGTGGCAACTACATGGAGCTTAGTGAGATACTGACGCCAGTCAAGGCtaacaaaaccaataaaacTCTCGACTGCAATGAAGAGTGTCGTCTGCTTGAGCGCAATCGCCGCCTCGCTATTGGTCTGCAGATACGCAATCCCGATTTGCCGCAGAAGCTAATGACCAAATATTCCGATTTCATACGTAATTTTGCCAAACGTGATCCAACACTGGTCAAATCCATACACGATGCCCTCACCACGCTGGTCAAACTGGCCAAGGAGAGCAAACAAAAGTCGCGCAGTCACTCGTTTCCGACAATGAACCGTGAGAAGCGGCAGCTGGTGCACGAAATGTGCGAAATGTTTGGCGTCGATTCGGTTGCCTACGATGCGGAGCCGAATCGTAATGTAGTGGCGACGGCGCAAAAAGATCGCTCTTGGCTGCCCGCTACCAGCATCATGGACGTTGTACAACGCGAGGCCGGACAGCGTCGAGTGCCAGTGCCCAGCAACAACGCCTGGGGTCTCAAGCGATAG
Protein Sequence
MNDLSMGFKHAILQRLQSFEESPAKLHAVAATIDSRSAAANMRGSATATSLNMQHRESFNFDSASTIYQGTTPIYQRTTPTYQRSSPTYQRSSPYPHSTPTYQRSSATYPIAAATFKTAPATYQRRTSALEGASTVAPSTAALKLPESPTIKRAAPIIKHEMTTLPKATATLPQTSPATIQTSSSCSSNSSSPTGQQPHITDFSINRILGCTTGGTKSKNRKTPHSTLPATYPVHNLDILDLSKSSATSPPTTPTYVTSYAAFHQDFLAAAAAANATKFYAHFFPHMFPATYPGSFPATPLTSSTNTYAKRYFAPYVLQTSAATSSVSNATCSIPSTSCTTSSSQSSHSAETSTREVHKSVCSRNCSVDCSRNFKHFSDKTSVSSSFLKTRASADITLHSATAITLSTSLTTAKNVTLDSLTSPLDPLMANYSGLNAEEISYKCRICDKVFGCSQTLQAHERTHKSPRYECTDCGKGFSQLRNYKYHLSVHRGTKEFAAECPECGKTFNDKGYLSSHMKIHRNKKEYECPYCPKSFNQRVAFNMHVRIHTGVKPHKCVECGKRFSRKMLLKQHMRTHSGEKPYQCSVCGKSFADRSNMTLHHRLHSGIKPFNCPICPKAFTKKHHLKTHLNYHTGCKPYVCPHPNCNQAFTQSSNMRTHAKKCQYKPLQLSFPAAHAMATTTTSAAAATTATTTATNSYAHQHIAALHHEHHSSAAAAALSDGIRLLSSSTFGGQQQTLPFPLAQQRNVRGQNYNKVPDTEHKQRQVANFGQNQEATTLDPIEFRGGETDLCQRLTTTYRRHQTLIINEWNFQCIQQQHSTSASPHRSRWRVPRLNSRNKLKTKRLHSNMSAESTPTTKLWQAYIAQHAAGVDLGATAVAGSKSSSSSSNSAANNENSSNNLNNINSSHNNYVNFNQFIMQHNFIGGATNDGSATASNFDAALFGVGSNSSNNVTTPTNANNLFGNSNNLASSLFPYNNNENNSNNINTANNSSSSVVGGGGGNNSNSFYMNGNNYNNSNNNNNAANFYDNLYTPFGAGTTYYANPFATGFDFATASNLQATAPEFVPRFGSLSLSAGAGVGDTLLLEAPHKQHSTENSLNLIETNKNVAAPTTTQTITTNTEGAVADFEISTFTTADGAGGDSRVTHNNNNNKSSKSSNMSRGGTGATSKQSNNSKNNSRKSNGFVYDAQRDSFNARDSTKSRDSLQSRDTRDSLNTRDSLNTRDSLNTRDSLNTRDSLNSRNPFKTDRDTLSSRDRERDSYNMRDRDSFNSRDRDSLNPRDRDSLNTRDRERDSLNARDRDRRFANGSGRRSLDYHQHERGEDRNERGGNHQRGHNQHNQQQQHQRERYDNNRSNKRRDDWNRNRDRINGYRVDEKYCASDNGKESPSLSSPEKKSPKKSASTTQQPAPNNADNEKLSQREKLMRDIETRRLECLVCVEPIKAHNAVWSCNNCYHILHLQCIIKWASSSKSDDGWRCPACQNVVKDVPRDYYCFCGKQRNPTYTRQDIAHSCGELCARVEGCTHACTLLCHPGPCPPCQAQVQRACGCGKTQKILQCCSKQAIECDETCGKLLNCELHTCESKCHADKCAPCSAQVAQQCHCSKQQREVACTRDSHDKTRYSCGKPCARDLSCGNHKCKDCCHAGECRVCKLSPAVVSSCPCGKLPLVEGTRSSCLDAIPLCEGICGKTLRCGKAAHPHHCTSRCHAGNCPPCNKQTAVKCRCGHMDQQIKCRQLSTRADDARCKKRCVKKRSCGKHKCNQECCIDLDHICPLPCNYTLSCGKHKCDQPCHRGNCPPCYRSSFEELYCECGAEVIYPPVPCGTKRPVCKRACTRTHPCAHAPQHNCHAAATCPPCMLFTTQWCFGQHEQRKTIPCSQQSFSCGLACQRPLPCGRHKCVRACHEGACQLVAGEQCKQSCTALRAACGHKCMAPCHDGACPETPCKELVEVQCDCGNRKQMRSCHDLAREYSRIATAQLASSMAEMQRGNYMELSEILTPVKANKTNKTLDCNEECRLLERNRRLAIGLQIRNPDLPQKLMTKYSDFIRNFAKRDPTLVKSIHDALTTLVKLAKESKQKSRSHSFPTMNREKRQLVHEMCEMFGVDSVAYDAEPNRNVVATAQKDRSWLPATSIMDVVQREAGQRRVPVPSNNAWGLKR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00624941;
90% Identity
iTF_00624941;
80% Identity
iTF_00624941;