Basic Information

Gene Symbol
stc
Assembly
GCA_951804985.1
Location
OX638131.1:103695992-103721334[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 8 0.0014 0.18 13.3 2.2 1 23 442 464 442 464 0.99
2 8 9.1e-06 0.0012 20.2 0.9 1 23 469 491 469 491 0.98
3 8 5e-07 6.6e-05 24.1 0.2 2 23 500 521 500 521 0.97
4 8 3e-06 0.0004 21.7 0.3 1 23 527 549 527 549 0.98
5 8 5.4e-07 7.1e-05 24.0 4.1 1 23 555 577 555 577 0.98
6 8 1.4e-06 0.00018 22.7 1.9 1 23 583 605 583 605 0.98
7 8 1.2e-05 0.0016 19.7 4.8 1 23 611 633 611 633 0.97
8 8 0.001 0.13 13.7 0.5 1 21 639 661 639 662 0.94

Sequence Information

Coding Sequence
ATGAACGATCTCAGCATGGGTTTCAAACATGCCATTCTTCAACGTCTGCAGAGTTTCGAGGAGTCTCCAGCTAAATTGCacgcagtagcagcaacaattgATTCCAGATCAGCAGCAGCAAATATGCGCGGATCTGCAACAGCAACGTCTTTAAACATGCAACATAGAGAATCCTTTAATTTTGATTCAGCATCTACAATATATCAGGGAACAACACCAATATATCAACGAACAACACCAACATATCAGCGTTCATCACCAACATATCAGCGTTCATCGCCGTATCCGCATTCAACACCAACATATCAACGTTCATCAGCAACATATCCaattgcagcagcaacatttaaAACAGCACCAGCAACATATCAAAGAAGAACTTCCGCTTTAGAAGGCGCCTCAACAGTCGCACCATCAACCGCCGCATTAAAACTTCCAGAATCGCCCACTATTAAAAGAGCTGCACCGATTATCAAACACGAAATGACAACATTACCcaaagcaacagcaacattgcCGCAAACATCACCAGCAACAATACAAACGAGCAGCAGttgtagcagcaacagcagtagcCCAACCGGACAACAGCCACATATCACAGATTTTAGCATTAATCGCATTTTGGGCTGCACAACTGGCGGCACAAAGTCCAAAAACCGAAAAACTCCTCACAGCACATTACCTGCAACATATCCAGTCCACAATCTTGATATTCTCGATCTCTCCAAGTCCAGCGCAACATCCCCACCTACAACACCCACTTATGTCACATCCTATGCTGCTTTTCATCAGGATTTTCTggctgctgccgctgctgcaAATGCCACCAAATTTTATGCACATTTCTTTCCGCACATGTTTCCCGCCACATATCCTGGCAGTTTTCCAGCAACACCGTTGACTTCTTCAACAAACACCTATGCCAAACGTTACTTTGCACCCTATGTTCTACAAACTTCCGCAGCAACATCTTCCGTTTCAAATGCAACCTGCTCAATACCATCTACATCCTGTACAACATCATCATCGCAATCGTCGCATTCTGCCGAAACTTCAACTCGTGAGGTTCACAAGTCTGTATGTTCTCGTAATTGTTCCGTCGATTGTTCGCGCAACTTTAAACATTTCTCGGATAAAACTTCAGTTTCTTCGAGTTTTCTCAAGACAAGAGCCTCTGCGGATATTACTTTGCACTCTGCGACCGCTATTACGCTTTCTACTTCTTTAACCACTGCGAAGAACGTCACATTGGATTCATTAACAAGTCCGCTGGATCCATTGATGGCAAATTATTCCGGCTTGAATGCGGAGGAAATCAGTTACAAGTGCAGAATATGTGATAAAGTTTTCGGTTGCTCGCAGACATTGCAGGCTCACGAGCGCACCCACAAGTCTCCCCGTTACGAATGCACCGACTGCGGCAAGGGCTTCTCGCAGCTGCGCAACTACAAATACCATTTGTCGGTGCATCGCGGCACAAAAGAGTTTGCCGCCGAGTGTCCCGAGTGTGGCAAGACCTTTAACGACAAGGGCTACCTTAGCAGCCACATGAAAATACATCGCAATAAGAAGGAGTACGAATGTCCGTACTGTCCGAAGTCGTTCAATCAGCGGGTCGCCTTCAATATGCATGTGCGCATCCATACGGGCGTCAAGCCGCACAAGTGCGTCGAGTGTGGCAAACGCTTCTCGCGGAAGATGCTGCTGAAACAACACATGCGAACGCACAGCGGCGAGAAGCCGTATCAGTGTTCGGTGTGTGGAAAATCGTTTGCCGATCGCAGCAATATGACGTTGCACCATCGATTGCATTCGGGCATCAAACCCTTCAACTGCCCCATCTGCCCGAAGGCCTTCACCAAGAAGCATCACCTGAAGACGCATCTCAATTATCACACCGGCTGCAAGCCGTACGTCTGTCCGCATCCGAACTGCAACCAGGCCTTTACGCAGTCCAGCAACATGCGCACGCATGCCAAGAAATGTCAATACAAACCGTTACAATTGTCGTTTCCGGCGGCGCACGCCATGGCAACGACGACGACCTCTGCCGCAGCGGCAACTACTGCAACAACAACGGCAACAAACAGTTATGCGCATCAACACATTGCAGCGCTGCATCACGAGCATCATTCTTCggctgcagcagcagcactaTCGGATGGTATTCGTTTATTGTCGTCCTCAACTTTTGGTGGCCAACAACAAACGTTGCCATTTCCGTTAGCTCAACAACGGAATGTACGTGGGCAGAACTACAACAAAGTACCTGATACTGAGCACAAGCAACGGCAAGTGGCCAATTTTGGCCAGAACCAAGAGGCGACTACCTTGGATCCGATTGAGTTCAGAGGAGGAGAAACTGATTTGTGTCAGCGACTGACAACGACATATCGTCGTCATCAAACGTTAATCATCAACGAGTGGAACTTtcaGTGCATTCAACAACAACACTCAACGTCAGCGTCGCCGCATCGGTCGCGTTGGCGCGTGCCGCGTCTAAACAGTCGCAACAAACTCAAAACAAAGCGGCTGCACAGCAACATGTCTGCCGAGTCGACACCGACCACGAAACTTTGGCAGGCTTATATAGCGCAGCACGCGGCAGGCGTTGATTTGGGCGCCACCGCAGTAGCCGGCTcaaaaagcagcagcagcagctccaACAGCGCAGCAAACAACGAAAATAGCAGCAACAACCTAAATAACATCAACAGCAGTCACAACAACTACGTCAACTTTAATCAGTTCATCATGCAGCACAATTTCATTGGCGGCGCCACCAACGACGGCAGCGCAACCGCCAGCAACTTTGATGCCGCGCTCTTTGGCgttggcagcaacagcagcaacaatgtCACAACACCAACAAACGCTAATAATCTTTTTGGCAACAGCAACAATCTCGCCTCATCGCTTTTTCCCtacaacaacaatgaaaataacagcaacaacataaacactgccaacaacagcagcagtagcGTCGTCGGTGGCGGCGgcggcaacaacagcaacagtttCTATATGAATGGCAACAActataacaacagcaacaacaacaataatgctGCCAACTTTTACGATAATCTTTATACGCCATTCGGCGCTGGCACCACTTACTATGCCAATCCTTTTGCCACCGGTTTTGATTTTGCCACCGCCTCCAATTTGCAGGCAACGGCGCCAGAGTTTGTGCCGCGTTTTGGTAGCCTTTCGTTGAGCGCAGGCGCTGGCGTCGGCGACACTTTATTGTTGGAGGCGCCGCACAAACAGCACAGCACAGAGAACagtttgaatttaattgaaactaataaaaatgttgctgcgccaacaacaacacaaacaattacaacaaacacAGAGGGTGCTGTTGCTGATTTTGAAATTTCCACTTTTACAACTGCCGATGGCGCTGGCGGCGATAGTCGCGTCacgcacaacaacaacaataataaatcatCAAAATCTAGCAACATGTCGCGTGGTGGCACAGGCGCCACCAGCAAACAGTctaacaacagcaaaaacaatagCAGAAAATCAAATGGTTTTGTTTACGATGCGCAGCGCGACTCTTTTAATGCACGCGACTCTACAAAATCACGCGACTCTTTACAATCACGCGACACACGCGACTCTTTAAATACACGCGACTCTTTAAACACACGCGACTCGTTGAACACACGCGACTCTTTGAACACACGTGACTCTTTGAACTCACGCAACCCCTTTAAAACCGATCGTGACACTTTGTCTTCACGCGATCGCGAACGTGATTCTTACAACATGCGCGATCGCGACTCCTTTAACTCACGCGATCGTGACTCTTTAAACCCACGCGATCGTGACTCTTTGAACACTCGTGATCGCGAACGCGATTCTTTGAACGCGCGCGATCGCGATCGTCGCTTTGCCAATGGCAGTGGCCGTCGCTCGCTCGACTATCATCAGCACGAACGCGGCGAAGACCGCAACGAACGGGGCGGCAATCATCAACGTGGCCACAATCAACAcaaccaacaacagcaacatcagcGTGAACGCTACGACAATAATCGCAGCAACAAACGACGCGACGATTGGAATCGCAATCGTGATCGCATCAATGGTTATCGCGTCGACGAAAAGTATTGCGCCTCTGACAATGGCAAAGAGTCGCCTTCGCTGTCATCGCCCGAGAAGAAATCACCCAAAAAATCAGCTTCAACAACACAGCAACCAGCACCAAACAATGcagacaatgaaaaattatcgCAACGCGAGAAACTAATGCGCGACATTGAGACGCGTCGCCTCGAGTGCTTGGTTTGCGTTGAACCCATTAAAGCGCACAATGCTGTCTGGTCCTGCAACAATTGCTATCATATTTTACACTTGCAATGCATCATAAAATGGGCGTCGAGCTCCAAGTCCGACGATGGCTGGCGCTGTCCTGCCTGTCAGAATGTGGTCAAAGATGTGCCACGCGATTATTATTGCTTTTGCGGCAAACAACGCAATCCTACATATACACGTCAGGATATAGCGCATTCTTGTGGCGAGTTATGCGCACGTGTTGAAGGTTGTACGCACGCGTGCACCTTGCTATGTCATCCGGGCCCATGTCCGCCGTGTCAGGCTCAAGTGCAGCGCGCCTGTGGCTGCGGCAAAACACAGAAAATCCTGCAATGCTGCAGCAAGCAGGCCATTGAGTGCGACGAAACTTGTGGCAAGCTTCTCAACTGTGAGCTGCACACGTGTGAGTCAAAATGTCATGCGGACAAGTGCGCACCCTGCAGTGCACAAGTCGCACAACAATGCCACTGCAGCAAACAGCAGCGTGAGGTTGCATGCACACGCGACTCACACGATAAGACGCGTTATTCATGCGGCAAGCCATGCGCGCGTGATTTGAGTTGCGGCAATCACAAATGCAAAGATTGTTGTCATGCGGGCGAGTGTCGCGTCTGCAAATTGAGTCCCGCCGTTGTGAGCAGTTGCCCCTGTGGCAAATTGCCGCTGGTAGAGGGCACACGCAGCAGCTGTCTCGATGCGATACCGCTTTGCGAGGGCATTTGCGGCAAGACGCTGCGTTGCGGCAAGGCAGCGCATCCACATCACTGCACCAGTCGCTGTCATGCGGGCAATTGTCCGCCCTGCAATAAACAGACCGCAGTCAAATGTCGCTGCGGCCACATGGATCAACAGATTAAATGTCGCCAGCTGTCGACGCGCGCCGATGATGCGCGCTGCAAGAAACGTTGCGTCAAGAAGCGTTCCTGCGGCAAACATAAGTGCAATCAGGAATGTTGCATTGACCTCGATCATATTTGTCCGTTGCCGTGCAATTATACGCTATCCTGTGGCAAGCATAAATGCGATCAGCCCTGTCATCGTGGCAATTGTCCGCCCTGCTATCGCAGCTCGTTCGAGGAGCTCTACTGTGAATGTGGTGCTGAGGTCATTTATCCGCCTGTGCCGTGTGGCACTAAGAGGCCCGTTTGCAAGCGTGCTTGTACCCGCACGCATCCGTGCGCGCATGCGCCACAGCATAACTGTCACGCGGCTGCCACGTGTCCGCCGTGTATGTTGTTCACCACACAATGGTGCTTTGGCCAGCATGAGCAGCGCAAAACCATTCCGTGCTCGCAGCAGAGCTTTAGCTGCGGTTTGGCGTGCCAGCGCCCGTTGCCGTGTGGCCGTCATAAATGCGTGCGCGCCTGTCATGAGGGCGCTTGTCAGCTCGTTGCCGGCGAGCAGTGCAAACAGAGCTGCACCGCGTTGCGTGCGGCATGCGGGCATAAGTGCATGGCGCCGTGTCACGATGGCGCCTGTCCGGAGACGCCATGCAAGGAGTTGGTCGAAGTTCAGTGCGATTGTGGCAACCGTAAACAGATGCGTTCGTGTCACGATTTGGCCCGTGAGTATAGTCGCATCGCCACCGCACAGCTAGCCTCTTCCATGGCGGAGATGCAACGTGGCAACTACATGGAGCTTAGTGAGATACTGACGCCAGTCAAGGCtaacaaaaccaataaaacTCTCGACTGCAATGAAGAGTGTCGTCTGCTTGAGCGCAATCGCCGCCTCGCTATTGGTCTGCAGATACGCAATCCCGATTTGCCGCAGAAGCTAATGACCAAATATTCCGATTTCATACGTAATTTTGCCAAACGTGATCCAACACTGGTCAAATCCATACACGATGCCCTCACCACGCTGGTCAAACTGGCCAAGGAGAGCAAACAAAAGTCGCGCAGTCACTCGTTTCCGACAATGAACCGTGAGAAGCGGCAGCTGGTGCACGAAATGTGCGAAATGTTTGGCGTCGATTCGGTTGCCTACGATGCGGAGCCGAATCGTAATGTAGTGGCGACGGCGCAAAAAGATCGCTCTTGGCTGCCCGCTACCAGCATCATGGACGTTGTACAACGCGAGGCCGGACAGCGTCGAGTGCCAGTGCCCAGCAACAACGCCTGGGGTCTCAAGCGATAG
Protein Sequence
MNDLSMGFKHAILQRLQSFEESPAKLHAVAATIDSRSAAANMRGSATATSLNMQHRESFNFDSASTIYQGTTPIYQRTTPTYQRSSPTYQRSSPYPHSTPTYQRSSATYPIAAATFKTAPATYQRRTSALEGASTVAPSTAALKLPESPTIKRAAPIIKHEMTTLPKATATLPQTSPATIQTSSSCSSNSSSPTGQQPHITDFSINRILGCTTGGTKSKNRKTPHSTLPATYPVHNLDILDLSKSSATSPPTTPTYVTSYAAFHQDFLAAAAAANATKFYAHFFPHMFPATYPGSFPATPLTSSTNTYAKRYFAPYVLQTSAATSSVSNATCSIPSTSCTTSSSQSSHSAETSTREVHKSVCSRNCSVDCSRNFKHFSDKTSVSSSFLKTRASADITLHSATAITLSTSLTTAKNVTLDSLTSPLDPLMANYSGLNAEEISYKCRICDKVFGCSQTLQAHERTHKSPRYECTDCGKGFSQLRNYKYHLSVHRGTKEFAAECPECGKTFNDKGYLSSHMKIHRNKKEYECPYCPKSFNQRVAFNMHVRIHTGVKPHKCVECGKRFSRKMLLKQHMRTHSGEKPYQCSVCGKSFADRSNMTLHHRLHSGIKPFNCPICPKAFTKKHHLKTHLNYHTGCKPYVCPHPNCNQAFTQSSNMRTHAKKCQYKPLQLSFPAAHAMATTTTSAAAATTATTTATNSYAHQHIAALHHEHHSSAAAAALSDGIRLLSSSTFGGQQQTLPFPLAQQRNVRGQNYNKVPDTEHKQRQVANFGQNQEATTLDPIEFRGGETDLCQRLTTTYRRHQTLIINEWNFQCIQQQHSTSASPHRSRWRVPRLNSRNKLKTKRLHSNMSAESTPTTKLWQAYIAQHAAGVDLGATAVAGSKSSSSSSNSAANNENSSNNLNNINSSHNNYVNFNQFIMQHNFIGGATNDGSATASNFDAALFGVGSNSSNNVTTPTNANNLFGNSNNLASSLFPYNNNENNSNNINTANNSSSSVVGGGGGNNSNSFYMNGNNYNNSNNNNNAANFYDNLYTPFGAGTTYYANPFATGFDFATASNLQATAPEFVPRFGSLSLSAGAGVGDTLLLEAPHKQHSTENSLNLIETNKNVAAPTTTQTITTNTEGAVADFEISTFTTADGAGGDSRVTHNNNNNKSSKSSNMSRGGTGATSKQSNNSKNNSRKSNGFVYDAQRDSFNARDSTKSRDSLQSRDTRDSLNTRDSLNTRDSLNTRDSLNTRDSLNSRNPFKTDRDTLSSRDRERDSYNMRDRDSFNSRDRDSLNPRDRDSLNTRDRERDSLNARDRDRRFANGSGRRSLDYHQHERGEDRNERGGNHQRGHNQHNQQQQHQRERYDNNRSNKRRDDWNRNRDRINGYRVDEKYCASDNGKESPSLSSPEKKSPKKSASTTQQPAPNNADNEKLSQREKLMRDIETRRLECLVCVEPIKAHNAVWSCNNCYHILHLQCIIKWASSSKSDDGWRCPACQNVVKDVPRDYYCFCGKQRNPTYTRQDIAHSCGELCARVEGCTHACTLLCHPGPCPPCQAQVQRACGCGKTQKILQCCSKQAIECDETCGKLLNCELHTCESKCHADKCAPCSAQVAQQCHCSKQQREVACTRDSHDKTRYSCGKPCARDLSCGNHKCKDCCHAGECRVCKLSPAVVSSCPCGKLPLVEGTRSSCLDAIPLCEGICGKTLRCGKAAHPHHCTSRCHAGNCPPCNKQTAVKCRCGHMDQQIKCRQLSTRADDARCKKRCVKKRSCGKHKCNQECCIDLDHICPLPCNYTLSCGKHKCDQPCHRGNCPPCYRSSFEELYCECGAEVIYPPVPCGTKRPVCKRACTRTHPCAHAPQHNCHAAATCPPCMLFTTQWCFGQHEQRKTIPCSQQSFSCGLACQRPLPCGRHKCVRACHEGACQLVAGEQCKQSCTALRAACGHKCMAPCHDGACPETPCKELVEVQCDCGNRKQMRSCHDLAREYSRIATAQLASSMAEMQRGNYMELSEILTPVKANKTNKTLDCNEECRLLERNRRLAIGLQIRNPDLPQKLMTKYSDFIRNFAKRDPTLVKSIHDALTTLVKLAKESKQKSRSHSFPTMNREKRQLVHEMCEMFGVDSVAYDAEPNRNVVATAQKDRSWLPATSIMDVVQREAGQRRVPVPSNNAWGLKR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00625195;
90% Identity
iTF_00625195;
80% Identity
iTF_00625195;