Basic Information

Transcription Factor Domain

TF Family: GCFC
Domain: GCFC domain
PFAM: PF07842
TF Group: Unclassified Structure
Description: This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 2.3 4.4e+03 -2.0 0.2 53 75 15 37 5 73 0.62

2 3 3.7e-08 7.1e-05 23.6 0.0 14 59 206 251 192 261 0.87

3 3 0.00011 0.21 12.2 0.0 125 154 260 290 251 295 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	2.3	4.4e+03	-2.0	0.2	53	75	15	37	5	73	0.62
2	3	3.7e-08	7.1e-05	23.6	0.0	14	59	206	251	192	261	0.87
3	3	0.00011	0.21	12.2	0.0	125	154	260	290	251	295	0.88

Coding Sequence: ATGCCACAGTCCACATCGACGTTGCTGGAGCAGGCGTATGCCAAGAATGCGTTGCAGAAGCCACAGCAGATGCTGCGCAACACACAGAGCGAACAGGATAAGAACAAAATGCACCCAATGAAATACGACAGACCATTAGCAACAGAACTACGCGAACTAAATGCCAAGCACAGCGCCGACGTTGAGCGCATCTCCAGCGAATTGCAGCAGCTGCAGATGGATCAGCAGATGTACACGGAGCACGCACCCACGGCAGCGGCCAAATATCGTTTTTATCAGGAGCTCAACTGTTATGTCTCAGACTTGGTAGATTGTCTCAATGAAAAGGTACCTTTATTTGCGATGCCTTTTGCAGTTTGCCTGTTCGAGCGCCGGCGACAGGATGTGCGCGATCAGGCCAAGGAAATGGCAGAGACCTTAAAACCCACCTATTCCGCAGCCGCGCGTCGTAGTGTCGAACACGAGGAACAAGTGCGTCGTGCCGCTGAACGTGATGTTAGACTCACGCGTCACCGCTGTGAACGTGAAAAGAACGAACTCTTGGCCTCGCACTTGGATGGCATGTCCAGCGATGATGAAATTTCCGATCATTATATGGAACAGTTTAAGACTAGTCTAGATATAGAATCGTATAAGGATGCTTTTGTCAGTCTTTGTCTGCCCAagTTCTTGGGACACTTAATACGCGTGGAGCTACACAATTGGTCGCCGCTCAATGACGAATACAAAGATATTGAGAAAATGAATAGGTTTGCGGCATCCATGCTATACGCTTATGTGACCACGATTATTGAGAAAATTATACTGCCGAAAATAACAGAAATTGTTAAATTCTGCAGGGATCCACTGTCTACAACGCAAACACTACATTTGATCGGCTGCATAAATTGA
Protein Sequence: MPQSTSTLLEQAYAKNALQKPQQMLRNTQSEQDKNKMHPMKYDRPLATELRELNAKHSADVERISSELQQLQMDQQMYTEHAPTAAAKYRFYQELNCYVSDLVDCLNEKVPLFAMPFAVCLFERRRQDVRDQAKEMAETLKPTYSAAARRSVEHEEQVRRAAERDVRLTRHRCEREKNELLASHLDGMSSDDEISDHYMEQFKTSLDIESYKDAFVSLCLPKFLGHLIRVELHNWSPLNDEYKDIEKMNRFAASMLYAYVTTIIEKIILPKITEIVKFCRDPLSTTQTLHLIGCIN

Sequence clustering based on sequence similarity using MMseqs2