Basic Information

Transcription Factor Domain

TF Family: GCFC
Domain: GCFC domain
PFAM: PF07842
TF Group: Unclassified Structure
Description: This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 2 0.028 54 4.3 0.0 39 59 46 66 43 72 0.88

2 2 1.4e-10 2.7e-07 31.5 0.0 126 190 76 143 65 150 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	2	0.028	54	4.3	0.0	39	59	46	66	43	72	0.88
2	2	1.4e-10	2.7e-07	31.5	0.0	126	190	76	143	65	150	0.90

Coding Sequence: atgctGTATACTGTTGCTGCATACGATGCACCCAGTACAACGAGCAACACTACACGAAGACTACAACGAGATGCACGACTGCAGCAGCATTCACCAGCTGGGTCTTTGTCTGCCCAagGTCTTGGGACTCTTAATACGCTACTCAATTGGTCGCCGCTCAATGACGAATACAAATATATTGAGAAAATGAATAGGTTTGCGGCATCCATGCTGTACGCTTATGTGCCCACGATTATTGAGAAAATTATACTGGCGAAAATAACAGAAATTGTAAAATTCTGCTGGGATCCACTGTCTACAACGCAAACACTACGTTTGATCGGCTGCATAAATCGACTCGGTCGTGATTTTCCTCTAAAAGAAACGTCAAAATCGGTGCAGCACCTCTTCAATAAAATATTGGACAAACTGAAGGTGGCTCTAGACAACGATGTATTTATACCTATGCACATCTACAGCAACGAGGCCATCAAGCAGGAGAGTCCCGAATATGGCGAGAATAaaccgaaaattatttttatcatGACATTACCATCATCCAAATTGACTACAACGTCATCGTCGTATATTGCCTCCAGTCCAACGATCTGCTCCGCTGGACAAATACTCAAAATAGTTGCGTCCATCGTCGTCACTGCAGTGGCCGGTTTTCTTCCGCCTCCGGTCAAATAG
Protein Sequence: MLYTVAAYDAPSTTSNTTRRLQRDARLQQHSPAGSLSAQGLGTLNTLLNWSPLNDEYKYIEKMNRFAASMLYAYVPTIIEKIILAKITEIVKFCWDPLSTTQTLRLIGCINRLGRDFPLKETSKSVQHLFNKILDKLKVALDNDVFIPMHIYSNEAIKQESPEYGENKPKIIFIMTLPSSKLTTTSSSYIASSPTICSAGQILKIVASIVVTAVAGFLPPPVK

Sequence clustering based on sequence similarity using MMseqs2