Basic Information

Gene Symbol
nfxl1
Assembly
GCA_018902025.1
Location
JAFEWB010000684.1:1436744-1443574[+]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 0.54 5.3e+03 -2.3 0.6 15 18 92 95 91 96 0.81
2 18 2 2e+04 -8.1 6.4 15 19 149 153 148 153 0.82
3 18 0.066 6.5e+02 0.6 0.4 4 10 184 190 183 190 0.96
4 18 6.5e-08 0.00064 19.8 15.5 1 18 198 214 198 215 0.98
5 18 2 2e+04 -4.6 2.1 6 10 241 245 240 245 0.85
6 18 2.7e-06 0.027 14.6 15.0 1 19 251 270 251 270 0.96
7 18 0.46 4.5e+03 -2.1 1.0 5 10 294 299 294 299 0.93
8 18 6.4e-06 0.063 13.5 9.5 1 19 305 325 305 325 0.92
9 18 2.1e-08 0.00021 21.4 15.3 1 19 359 377 359 377 0.99
10 18 0.7 6.9e+03 -2.7 0.4 1 5 386 390 386 395 0.73
11 18 0.0011 11 6.3 14.9 1 18 411 428 411 429 0.97
12 18 2.4e-08 0.00023 21.2 14.8 1 19 438 456 432 456 0.90
13 18 1.8e-05 0.17 12.0 7.4 9 19 501 511 499 511 0.88
14 18 0.0014 14 6.0 6.1 1 12 523 533 523 533 0.96
15 18 0.0001 1 9.6 7.6 1 12 600 611 600 611 0.96
16 18 0.045 4.4e+02 1.2 16.3 1 19 639 656 639 656 0.94
17 18 1.7 1.7e+04 -3.9 1.6 8 13 661 666 660 666 0.74
18 18 0.00015 1.5 9.1 10.9 1 16 707 721 707 727 0.92

Sequence Information

Coding Sequence
ATGGAAGAGCATAAACATGTGCAATCAAAAAACTTGGCATCTGGAAAGAGACTTGAGAATACCTTTACCCATATCTCTAGTTCAGAAGATGAAGAAGAATTGGATGAAAAGCATATCTTGGATCTATTGTACAAAAACTACCAACCCGTCTCGGATGCATCTCGAACCCAAACTTACCGTACATCCGTGTTCCTTGAAAATACACTGCATTCGGGAGCTGCAACGTGCCTAATATGTATTGGTGGCATCAAACGCGTAGAGTCAATTTGGTCGTGTCAATCTTGTTATTGTTTTTTTCACCTAAATTGCATTCAACGCTGGGCTAATGACAGTGTCATGCAAATGAAGGTAAAAGGAGAGCAGCAGCGAAATGACAATCAGGGCTACTATAATCATTTGGGGGAGTTTGTTCCACCAAAGCGTAAAAAGTCTCTTCACTGGTGTTGCCCGCAGTGTCGTATGGAATATCAACCTGAGGAGAGGCCAACCACATACAACTGTTTTTGTGGTAAGGAAATCAATCCTACTGCACAGCCCTTCCTAGTTCCACATTCATGTGGCGAGGTTTGCGGAAAGTTTCTAAAACCAAAGTGTGGCCATGACTGCAAACTTCTATGTCATCCGGGGCCTTGTCCACCGTGTGCGCAGCAGTCTGAAAATACTTGCCGTTGCGGCAAATCTGCGCCACGGCCTCTGCGCTGTATAGACCGAGATTGGCAATGCCAAGAAAGATGCGAAAATCTTCTATCATGTGGCAAACACAAATGCAATCAGAGATGTCACCGTGCAGGAAACTGCCCAGGCTGCACCAGGCAGAGTACACAACCATGTGAGTGCGGACGAGATATGAAGGTTGTCAGCTGTGCCAATAGAAAATGGAAATGCCAGAATATTTGTGGTGGCCGTTTTGTCTGTGGACTGCACTCTTGTGATAAAATATGTCATAAAGAACCATGCGAAATGGCTGAGTGTCCCTTTAACGTCCGAAGCTGTCCCTGCGGTAAAAATAGCCAATCTTTGCCATGCAGTGAAGTGGTGGATTCCTGTGGCGACACTTGTCAAAAGATTTTGTCCTGCGGCCAACACACATGCACGCAACGTTGTCATCGTGGACCTTGCATTTCGTGCCCAGTCACAACAAGGAAGAAGTGCCGCTGTGGTCTACACGAAAAGGAGCTGCCATGCTCTAAAGAGTTTACGTGTGATACTAAATGCAAGCAAGTTCGGGACTGCGGAAAACATGCCTGCAACAGAAAGTGCTGCGGAGATCAGTGTTTGCCCTGTGAAAAGATATGTGGCAAGCCTTTGAGTTGCAACAAGCACAAATGCCAATCGGTTTGTCACCGTGGGCCTTGTTATCCATGCAGGCTGGAGTCAGTAGTTAATTGCCGATGTGGCAAAACACGACGACATGTTCCTTGTGGCAGAGAGAGAAATACACGGAACCTATGCCTTGAGCTGTGTCGAATTTCAGCCAAGTGTCATCATTTCGTAGAACATCGTTGCCATAAGGGTGATTGTCCGCCATGCCGCCAGAAATGTGGCCTTCCAAATGATGTCAGCGGTTGTGGCCACATTTGCAAAGCGGTATGCCACGAGGCCGTAAAAGTCAAAAATCAGAAAACATTAAATATCAAAACGCAGATTAAAAAAACATATGAATATAAAGTTTTTCCACATCCGCGTTGTGAGGAGAGCGTAAATGTCAAATGCATTGGTGGTCACGAAGTGATAACCACACCTTGTTGGAACTCTAAGCCAACCTCGTGTTATCGTAAATGTGGCAGAGTATTGAAATGTGGTAATCATCAATGTAATCTTACTTGCCACACGGTCCCGAATTTGGAGAGCATGGAGCAACAGGTAGGCTGTATCAACTGTGAAGAGGGCTGCGTTAGACCCAGATCTAGTGGTTGTAGTCATCCCTGTCCCAAAAGCTGTCATTTACCTCCCTGCTCTCCATGCAGTGTTTTGCTTAAAAGTAAGTGCCATTGCGGACTCATACAAGTAATGTACAAGTGTAGCGAATTTTTTAACGATACGGCCTCAATCCAGGAGCAACTCGAGCAAAAGGAGAGATTGGGAAGCTGCGGAAATCGTTGTATTAAAAATTTTCCTTGTGGTCATCGATGTCTAGCCGATTGTCACTCTGGGATATGCCCAGGTCCCGAGCTATGTCGTAAAAAAGTACGCATTTACTGCCCTTGCAAAACGTTAAAGCAAGAAATTTCATGTGATATTCATCGAGCTCGCCAATTGCTACTACAGTGCAACTCTCAATGTGAAGCTATTAACTCACGTGCTTTTAGAGAACTTGCACAAAAACAACACTTGGAGGAAGAAAAAAATCGTCTGGAGTTCGAGAAATTTCAACAAAAGTTTGAAAAGCGCAAGCACAAGGAGCGCAAAATTGCAGACATAGAGCCAAGCCAAAAGACGTTCAATTGGCAACGCGGAGCCATCTATGCTGTGTCTTTAACGGCAACATTAGGAGCGCTGGCAGTAGCTTACTATGCAGATAGGTAA
Protein Sequence
MEEHKHVQSKNLASGKRLENTFTHISSSEDEEELDEKHILDLLYKNYQPVSDASRTQTYRTSVFLENTLHSGAATCLICIGGIKRVESIWSCQSCYCFFHLNCIQRWANDSVMQMKVKGEQQRNDNQGYYNHLGEFVPPKRKKSLHWCCPQCRMEYQPEERPTTYNCFCGKEINPTAQPFLVPHSCGEVCGKFLKPKCGHDCKLLCHPGPCPPCAQQSENTCRCGKSAPRPLRCIDRDWQCQERCENLLSCGKHKCNQRCHRAGNCPGCTRQSTQPCECGRDMKVVSCANRKWKCQNICGGRFVCGLHSCDKICHKEPCEMAECPFNVRSCPCGKNSQSLPCSEVVDSCGDTCQKILSCGQHTCTQRCHRGPCISCPVTTRKKCRCGLHEKELPCSKEFTCDTKCKQVRDCGKHACNRKCCGDQCLPCEKICGKPLSCNKHKCQSVCHRGPCYPCRLESVVNCRCGKTRRHVPCGRERNTRNLCLELCRISAKCHHFVEHRCHKGDCPPCRQKCGLPNDVSGCGHICKAVCHEAVKVKNQKTLNIKTQIKKTYEYKVFPHPRCEESVNVKCIGGHEVITTPCWNSKPTSCYRKCGRVLKCGNHQCNLTCHTVPNLESMEQQVGCINCEEGCVRPRSSGCSHPCPKSCHLPPCSPCSVLLKSKCHCGLIQVMYKCSEFFNDTASIQEQLEQKERLGSCGNRCIKNFPCGHRCLADCHSGICPGPELCRKKVRIYCPCKTLKQEISCDIHRARQLLLQCNSQCEAINSRAFRELAQKQHLEEEKNRLEFEKFQQKFEKRKHKERKIADIEPSQKTFNWQRGAIYAVSLTATLGALAVAYYADR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00571590;
90% Identity
iTF_00612497;
80% Identity
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