Basic Information

Gene Symbol
Trerf1
Assembly
GCA_018902025.1
Location
CM032166.1:19488927-19500417[-]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 5.3e-09 6.5e-06 26.3 0.1 2 45 1467 1510 1466 1511 0.94

Sequence Information

Coding Sequence
ATGCTTACGGAGAATGATATTTGCTGCAAAATCTTTGGAAATGCTTCGGCGTTGGCCAAGCACAAACTGACGCACAGCGACGAACGGAAATACATTTGCGCGCTTTGCTCTAAGGCATTCAAGCGGCAAGATCACTTAAACGGACATATGATGACTCATAGGAATAAGAAGCCTTACGAATGTAAGGCAGATGGCTGTGGCAAATCCTACTGTGATGCTCGCTCATTGAGACGTCATTCGGAGAATCATCATACTGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGTACACTCAGCCTGTCACCGGCCACAGCCAGCGGGGATGCCAGCTCTCCAGATGGTGCCACCTGTATACGCACTTACATTTCCACCGGCAGCTCTGTGGTCGATGCAGCTACAGGCATCGCTCTTTCCGATGAGCAAATCAAGGCCATGAACTTGCCGATTAAGACCGGAGTGACGCTTCTCTCGCCCACCACATCGACATCCTCGATTGCCTCGTCCAACGCGTCATCATCAACGTCGTCGTCGTCATTGGCATTAGTGTCGGCATCCTCGACAACAGCCATGGCTCCATCCTCGGGACCGGGTACATTAATTGCCACTTCGCCAACCATAACCCTGGCTGATGGCAGTAGCCTGGAGGGTGAGGGTCTCACACGCGAACAACTGGATCTCATTAGCAAGATAATGCAGCAGACAAAGCAAACGAGTGCCCAGGTGACTGTGTCCTCGCCCACCAGCATTAGCTCCTACAAAATCAACACAAACTCAGCGCCAACACAATCCAGGCCACGCACTTGGAACATGCAATTGCTCAACAACTCACAGAATGTCACAGTCACCGTTGAGGATGGTACAGATTTGGTTCCCTCATCCTCATCCTCCTCCAGTTCGCCGGTCGAGGTTAAAGAGGAGGAGCTCAGTCCACAGCTGGTGGCGGCCATCAATCCGCATCTGTTGAATATTGTCAAACTGGACAAGCCAGTCGAGTGCAATTTGTGTCACCGAAAGTTCAAAAACATACCTGCCCTCAATGGGCATATGCGTTTGCATGGCGGCTACTTTAAAAAGGATGCCGAAAGCAAACGCAATGAGAAAAAGGACTCCAATGGACCGCCACTGCAGACAGCTAGCATTGGGGTACGAGCCCTGATTGAGGAGAAGATTATTAGCAAGCGCAAGGATATAAACAAGGGTTCTTTTGTGGTCCCCGCCCCGCCAAATAGTAATTGCGCTACAACCACATTGAGACGTTCGATCAGTGATCTGGAGAGTTTTCTCAATCCCAAGAGTAATGCGAACAGTATAAATAATGTCACGCCCACCACTACAACCGTTTTGCCAGCTGCCACCACAATTAAGAGCAGCAATGGTCTGAGTATACAACAAATTGGACTGCCACAGAGTATTGAGATCTTCAGCGGTGGACAGAAACAATCGAAAACACTAAATCTCGGCGGTGGCAGCAATACGATAACCATAACCACCAACAATGTGCCCACCACAACCACAATGAGTGCATTGACAGCCCTGAAAGCTGGCGGCACATTCAGCGGAGTATCAGCGTCGGCATCCACCAATACGGATCCCAAGGATTCCACTTTGATTGAGCTACTTAAGCGAGGGACACGCATAGCGGTGACTTCGAAGAAATCATCCCAAACATCTCACACACAAATGCAGGCCCAGATTCAGACACAAACTGTTGGCGCCCCTATAGCCGGAGGGGGGACTCTTACCGAACTGACAGGAATCGGTTCGAATAGTCGTCAGATTATCACCAATAATAATCGCACTGTGATCATACCATCCGACGTCCAAGTTGTATCCACCAAGAGCAAACTGAACACCCTTTCGAGTCTTGTGAGGGCCAGCAGCAACATTGGAGGCGGAAACACTATGACAAACGGCAACAATAACAACAACAACATTTCATGTCCAACTAATAGCATTTCCCTACCGGATGGTACACCATTGTCTTTGACAATTGCTCCCAGCCAAGACGGCACAAGCACTTTGACAGGCGCTCCAACTGGCGGTGTTATTACCAGCGGAGGTAATGGTGTCTATACTGTGACTTATACCAGCGATGGAACCGATCTCTTCGATGATGCCGAAGTCTACAATGTTACCGACACAGAGATGCTCCTGCAGACGGTTGATACCATGGAGTTGCTCAATAATGAAGAGGATGACGACGAAGATGCCCAGATGAAGAGCGAACATTCCGAAGAGTTTGCCCTACTCAGCGAGGCCGGCGATAGTGCGCATACGCAGCTGGTCAAGCTGGAGGCAGACAATACAAATAATGGGACAACAACCACAACAACAACAACAACGGCTCTGCCCACCTTCCAGCAATTCCATTCCAAGGAGCTAATCATGCAGAATAGCTCTCAGATCCAGGCCATAGCCAGCATGCGTGTTGGCAGTGTGTTGACATCGCCAATACACTCACCATTGGCCTATCCCACACCACCGTCTAGCCATGAGAATATGGCCCAATCTTCGCCGTTCATTGAGGATGCAGCTGCCCAGTTTGTGGATGCTACACACACTTTCTTTGGCGATAAAACAGACTTTTCGCACATCTATTTCAAGACCGACGATGGCCAAGAGACCCATGAGCAACTGAGTGCCAACGATAATGAAAAGATTCTCAAGTTGAAATCTGTGCTGGAGGAGAGCAGTTTTGATCCATCGATTAAAGTAGAAGATCTATTGAATGGCACTGAAGATGATACCGAGTGTGATTTGCGTGAGTTTGCCGAGACGAATCTTTCGTTTCTTGACGAGGATCAAGAGTTTCTCAATGATTCGCGTAATGCCACATCGCCACTATCCGAGTCCTTTTTCACCAGCGGCATTGGTTCTGCAGAGGATGTAAAGCAAGTTTTGCGAGAGGTGTTGCCCGATGAGAATATGCAATTGCAATTGTCAAGCGAGCAACAGGGTGAGAATATTATCGATCTCTATTATTTGCCTGGCTTGGCTCTTCAATCGCAGATGATGCCCAATTCCGAGGATCCATTGTTGTCGTCGTCCCCGCGTGAATTTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTATTATGCCCTTGGTTAGTGGTCAAAATTTTGCTCCTGTTGCCAATCAACCACAATTTTTGGATACCAATCAACAGTCAATGACTCTCAATAGTATCCTGCAACCATTGCTCTATTGTGGTAATACCGTCAATGGCAATGGCAATGGCAATGATGCCATGCTTGTAACAGACTGCCAAACGAATGCATCCCAGCCACAAAGCAGCCTAGAGGCAAGTCTGCTCTTCACCTGCGGCTCCACAACTATTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCTAGGCAGAACTCTAATGGGCACTCTGCCACCCACATTAATGCCAGCGCCACTTGCACCAGGCGTATCAAATTTACAGCCCTTGTCGAATCAAACAAATTCCATACTAAAACGTCGCCTACGCTCGAATGTATCGCAGGAGACACACAAATTCTCCAAATTCCATACCCTTTCACCGCACCGTTCCAAGTTGCGGAAACCATCGCGTACCCATTATACACCAGCACCCATGCTCAATCCGGACCGTAAGGGCACCGGACTCTATTGCAATGTTCGCAAACAAATGGGTCAGAATTCGATGTTCGATGGATTCGACGATGATTTCGGTGATCCGGTGGGTTTGGTCGATTTCTCTGACGAGTCAAAGGTGAATTTAGGCTCGACATATCAGGCTCAGATACCTGCCTGTAAACCATTTGAGGAGGCGGCCCACGATACACTTGGAGCTGAAATGATGTGGGATCCCGAAATACAGGAAGATGAGAAAATATTAATGCGCTATATAGATCTGAGTAAATCATCAGCCGTACCCATGGGCAGTCATTCCGAGGAGGTAGCTCTGCAAACCTTACTCAAATCGAAGGGAAATTCGGCAGCGGCTGTCCTCATTCTGCTTCAGACGCAGTCCAATGCATTCCAAATGAAGTGGACGGCCATCGAGTTGGAGCATTTTCTGCGTGGTCTGGAAAAGCATGGCAAGAATTTTGGCAAAATTGCCAATGAGCTTGTCACCAAATCTTCTGGCGAATGTGTGCAAATGTATTATTTCTGGAAGAAACTCTGCGTCGATTATAAAGTGTCACATTTGAAAATGGAAGCAGTTGCCCATAGCACACCAGCCATAGAGAAGCCCTATGTATGCGAAATAGCTGATTGTTCGGCGAGCTTTACTTCGAAAGCGGCGCTGCACGGTCATGTACGCATACACGCTTATGGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGACGGTGATTTCCCCTGCAAGGTGTGCGGCAAAGTCTTCAATAAGGTCAAGAGTCGTAGTGCTCATATGAAAACGCATCGTGTACAGGAGCAGGATAATCAATCTGCCAATACAAAACAACAACAACAACAACAGTTAAATGCAATTCCAGTAGCAGCCGCAGCATCCGCATCCGCATCAGCATTGATTACGGCATCTGCATCCGCATCGGCAACCATAGCGATTATCACAACATCGTCGTCATAG
Protein Sequence
MLTENDICCKIFGNASALAKHKLTHSDERKYICALCSKAFKRQDHLNGHMMTHRNKKPYECKADGCGKSYCDARSLRRHSENHHTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTLSLSPATASGDASSPDGATCIRTYISTGSSVVDAATGIALSDEQIKAMNLPIKTGVTLLSPTTSTSSIASSNASSSTSSSSLALVSASSTTAMAPSSGPGTLIATSPTITLADGSSLEGEGLTREQLDLISKIMQQTKQTSAQVTVSSPTSISSYKINTNSAPTQSRPRTWNMQLLNNSQNVTVTVEDGTDLVPSSSSSSSSPVEVKEEELSPQLVAAINPHLLNIVKLDKPVECNLCHRKFKNIPALNGHMRLHGGYFKKDAESKRNEKKDSNGPPLQTASIGVRALIEEKIISKRKDINKGSFVVPAPPNSNCATTTLRRSISDLESFLNPKSNANSINNVTPTTTTVLPAATTIKSSNGLSIQQIGLPQSIEIFSGGQKQSKTLNLGGGSNTITITTNNVPTTTTMSALTALKAGGTFSGVSASASTNTDPKDSTLIELLKRGTRIAVTSKKSSQTSHTQMQAQIQTQTVGAPIAGGGTLTELTGIGSNSRQIITNNNRTVIIPSDVQVVSTKSKLNTLSSLVRASSNIGGGNTMTNGNNNNNNISCPTNSISLPDGTPLSLTIAPSQDGTSTLTGAPTGGVITSGGNGVYTVTYTSDGTDLFDDAEVYNVTDTEMLLQTVDTMELLNNEEDDDEDAQMKSEHSEEFALLSEAGDSAHTQLVKLEADNTNNGTTTTTTTTTALPTFQQFHSKELIMQNSSQIQAIASMRVGSVLTSPIHSPLAYPTPPSSHENMAQSSPFIEDAAAQFVDATHTFFGDKTDFSHIYFKTDDGQETHEQLSANDNEKILKLKSVLEESSFDPSIKVEDLLNGTEDDTECDLREFAETNLSFLDEDQEFLNDSRNATSPLSESFFTSGIGSAEDVKQVLREVLPDENMQLQLSSEQQGENIIDLYYLPGLALQSQMMPNSEDPLLSSSPREFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFIMPLVSGQNFAPVANQPQFLDTNQQSMTLNSILQPLLYCGNTVNGNGNGNDAMLVTDCQTNASQPQSSLEASLLFTCGSTTIVXXXXXXXXXXXXXXXXXXXXXXXXXLGRTLMGTLPPTLMPAPLAPGVSNLQPLSNQTNSILKRRLRSNVSQETHKFSKFHTLSPHRSKLRKPSRTHYTPAPMLNPDRKGTGLYCNVRKQMGQNSMFDGFDDDFGDPVGLVDFSDESKVNLGSTYQAQIPACKPFEEAAHDTLGAEMMWDPEIQEDEKILMRYIDLSKSSAVPMGSHSEEVALQTLLKSKGNSAAAVLILLQTQSNAFQMKWTAIELEHFLRGLEKHGKNFGKIANELVTKSSGECVQMYYFWKKLCVDYKVSHLKMEAVAHSTPAIEKPYVCEIADCSASFTSKAALHGHVRIHAYGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGDFPCKVCGKVFNKVKSRSAHMKTHRVQEQDNQSANTKQQQQQQLNAIPVAAAASASASALITASASASATIAIITTSSS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00612008;
90% Identity
iTF_00571477;
80% Identity
iTF_00618686;