Dvul025864.1
Basic Information
- Insect
- Drosophila vulcana
- Gene Symbol
- -
- Assembly
- GCA_008042555.1
- Location
- VNJP01005388.1:20383-23743[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00052 0.07 14.2 1.0 3 23 182 203 181 203 0.97 2 13 0.0023 0.31 12.2 1.1 1 23 220 243 220 243 0.92 3 13 0.00079 0.11 13.6 3.0 1 23 314 337 314 337 0.96 4 13 0.003 0.4 11.8 1.7 2 23 392 413 391 413 0.95 5 13 0.82 1.1e+02 4.1 0.5 1 20 528 547 528 549 0.84 6 13 0.0051 0.69 11.1 0.7 1 23 558 580 558 580 0.95 7 13 0.00018 0.025 15.6 0.9 1 23 587 610 587 610 0.96 8 13 0.00024 0.032 15.3 0.3 2 23 619 640 618 640 0.96 9 13 0.001 0.14 13.3 0.0 2 21 667 686 666 691 0.92 10 13 0.00039 0.052 14.6 1.1 1 23 727 750 727 750 0.96 11 13 3.5 4.8e+02 2.1 1.3 1 21 757 777 757 778 0.91 12 13 0.037 4.9 8.4 0.0 2 23 788 810 787 810 0.94 13 13 1e-05 0.0014 19.6 0.3 1 23 832 855 832 855 0.97
Sequence Information
- Coding Sequence
- ATGACGCGGACGTGCAGAATCTGCGGCGGAGCTGACGGGCGCTACTGGATTGAGACGCCCGTGGAGAAATATGCGGAAAAGACCTTTGGACAACTGCTCGTCGAGCTGGCGAGAATAGAGGTGGCCATGGCACAGGCGGAGAAGTTTCCCCAGTGGCTGTGCTCCGCCTGCGCCCAGAAGCTGGAGACCACCTACGACTTTGTGCTGCAGGCGCGCCAAACGCACGAGCTGTGGCTGCGCAAGCTGGAAGACGACTCTGGGGACGAAATGCTGGGATCAGAGGCCTTGGAGGCTCTCAGGGAGACACCCATCCATTTGTTCGAAATCGAGGGCGTGACCATCAAGTCCGAGGTGCTGGAGCCGCCAATGAAGCTGCGAAGAGGCGAGGCAGCCGCCGATCCTCTGGTACGCTCGCGTTTCGTCAAGCGCACCATTATGCACTTTAGCGACTCGGACGAAGGCGACCAGGACGATGTCCCGCTAAGGCAGCGCTTAGGGTCACCTGCCCCACAACCCGTCAGCGCAGAGGAAAAGCACAACCTCTGCGAGGTGTGCAACAAAGCGTTTCGATTCGTCACCAACCTGTATCGCCACAAACAGCGGGATCATGGCCTGCCCCCCAAGCCGGGCGAGGAGATAGACGACGATGACAACTACTACAAGTGCGATCAATGCGACAAAGCGTACAAGTATGTCATGGCGCTGGTAAAGCACAAGCACGCAGAGCACGGAGCGAGTCTATTGCCCGCGAAGACGTCCAGGCGGAAGATGCCTGGCAGGCCGTCGGTGATGCCCGGCGATGCGAGTCCCTCTAGTCCAGCTTCCACCTCGGGAACCTCTACGCAGCGCAGTCGCGGCAATACTGACGCCCTGGTGCATAGCATCATCAAGGCGGTCGAACTCTCGGACGAGGACGGCAGCTGCAGCGTGGACAACTACTACAAGTGTGATGAGTGCAGCAAGTCCTACAAATACATTGTCAGCCTGATCAAGCACAAGCACCGGGAGCACACGGAGCGGACGGACAAGAAGCAATCGGACTCTGAGGACGATCTGCCGCTGGCCTCCACATCTGCAGCCTTGGCAGCATCCTCAGCAAAGCCCTCGAGGATCAATCGACGCGTCGAGGACTTCGATCCGCACAGTTGCGAGCCGAATGGGGCCAAGGAAATCAAATGCATGATCTGCCTTCGTCGGTTCACCAGGTTGCGCGAGCTGCGGGATCACCTGCACGCCCATCCCACTGACTTCGATTTCGAGGCCCATGGAGAGCCCATCGAGCGCATAGCCGAGGGCTTTTTCAAGACTGCCGTCGAGTCCACGACGGAGGGCCTGAAGCGTCGCATATTCCGGGATCTCAGGCTGGGCGTGTACGGACGCTACTATTCCATAACGAACCAGGCGCGCTATGAAATGAATATGGACAGCTCGGACACGGACAGCGAGGGTGAGGGCGAAGCGGACGTTGTGCTGCGACGCAGCTACGCCTGCGAGCTCTGTGACTCCCCGGAGGCTAGGTGGCCGCGGAAGTACCTGCTGCACCAGCATCACCGGCAGGAGCACACCTGGCTGGATGCCCCCTATGTCTGCCAGCGCTGCGACTCGCGCTTCCTCAGCGCCCAGTTGCTGGAGCATCACACCAGCCAGCTGTGCCAGAATACACTGAAGCGCTTCCAGTGCGACAAGTGTCCGCAGCGCTTCTTCTGGCGGCGTAACCTACGCGCCCATCTCGTCGAGCACAAGAGCAAGCAAGAGTACTACTCGTGCGATCAGTGCTCCCGCAGCTTCCAGGACAAGAGCGCCGTGACCAAGCACAAGTTGATGGTGCACCGGGATGGCAACGCCCAGCTCATTCCATGCCGCTGGTGCACGCGCACCTTTTACCGCCCCGGTCTGCTGTACAAGCACGTGCAGCGGCACGGCTTTACCGGCCAGGATCTGCCGCTGGCCGAGACGCTTCTAGCGGATGCCTCCAAGCATACGGGTCAGAAAAGTATTCAGTGTAAAGTGTGCGACATTCAATTCATCAGCGTGGCGGATCTGCGTCGCCACATCGCCATGCAAAGTGGCCACAGCGACCTGCCATCGGCGTACATGATAAGCACTGAAACTGGCTTTGAACTCCTCCTGGAGGATACGGATGATAGTGATGAGGAGAGTTTCGCCACCAGCAGAACCTACAGTTGCGACCTCTGCGACCTGAGCTTCCGACGCAGACGGGAGATGAGCGAGCATCAGTACTCCCTACATAGTTTCGACAAGCTGCCACATTCCTGCGAGCACTGCATCTTCAAGACTGTGGATAAGTCCATGCTGGATCAGCACTTGAGCAGACAGTGCAGGAACAATGACAAAAAGTTAGTCTGTCCGCGTTGTGGCTACAAGTTCATGTGGGAGGAGAATCTCGCCCTGCATCTGGCCACCCAGCATCCCAAACAACCAAACGTCATGCCGGAAAGTCAGCCGGTGTCGCGACGGAAACGACGCTTCCGCTATCAGTGCCCGCACTGCTGGCGTTCTTTTGTCGTTCAGCCCAGCCTGGATAAGCACATCCGTGACATGCACCTGCGGCGTCATGTCTTCATGCACAACGCCAAGTCATAG
- Protein Sequence
- MTRTCRICGGADGRYWIETPVEKYAEKTFGQLLVELARIEVAMAQAEKFPQWLCSACAQKLETTYDFVLQARQTHELWLRKLEDDSGDEMLGSEALEALRETPIHLFEIEGVTIKSEVLEPPMKLRRGEAAADPLVRSRFVKRTIMHFSDSDEGDQDDVPLRQRLGSPAPQPVSAEEKHNLCEVCNKAFRFVTNLYRHKQRDHGLPPKPGEEIDDDDNYYKCDQCDKAYKYVMALVKHKHAEHGASLLPAKTSRRKMPGRPSVMPGDASPSSPASTSGTSTQRSRGNTDALVHSIIKAVELSDEDGSCSVDNYYKCDECSKSYKYIVSLIKHKHREHTERTDKKQSDSEDDLPLASTSAALAASSAKPSRINRRVEDFDPHSCEPNGAKEIKCMICLRRFTRLRELRDHLHAHPTDFDFEAHGEPIERIAEGFFKTAVESTTEGLKRRIFRDLRLGVYGRYYSITNQARYEMNMDSSDTDSEGEGEADVVLRRSYACELCDSPEARWPRKYLLHQHHRQEHTWLDAPYVCQRCDSRFLSAQLLEHHTSQLCQNTLKRFQCDKCPQRFFWRRNLRAHLVEHKSKQEYYSCDQCSRSFQDKSAVTKHKLMVHRDGNAQLIPCRWCTRTFYRPGLLYKHVQRHGFTGQDLPLAETLLADASKHTGQKSIQCKVCDIQFISVADLRRHIAMQSGHSDLPSAYMISTETGFELLLEDTDDSDEESFATSRTYSCDLCDLSFRRRREMSEHQYSLHSFDKLPHSCEHCIFKTVDKSMLDQHLSRQCRNNDKKLVCPRCGYKFMWEENLALHLATQHPKQPNVMPESQPVSRRKRRFRYQCPHCWRSFVVQPSLDKHIRDMHLRRHVFMHNAKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00548234;
- 90% Identity
- iTF_00524559;
- 80% Identity
- -