Dvii002624.1
Basic Information
- Insect
- Drosophila virilis
- Gene Symbol
- -
- Assembly
- GCA_007989325.2
- Location
- CM017608.2:12369514-12370158[-]
Transcription Factor Domain
- TF Family
- zf-LITAF-like
- Domain
- zf-LITAF-like domain
- PFAM
- PF10601
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family display a conserved zinc ribbon structure [3] with the motif C-XX-C- separated from the more C-terminal HX-C(P)X-C-X4-G-R motif by a variable region of usually 25-30 (hydrophobic) residues. Although it belongs to one of the zinc finger's fold groups (zinc ribbon), this particular domain was first identified in LPS-induced tumour necrosis alpha factor (LITAF) which is produced in mammalian cells after being challenged with lipopolysaccharide (LPS)[2]. The hydrophobic region probably inserts into the membrane rather than traversing it. Such an insertion brings together the N- and C-terminal C-XX-C motifs to form a compact Zn2+-binding structure [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.9e-22 1.5e-19 69.5 17.5 1 70 94 164 94 164 0.96
Sequence Information
- Coding Sequence
- ATGGAACAGAAGCGTGCCATGCTCTATCCACAAGTGGATTTCAACACGCCAAGCGCTCCGCTGCCGACGCCAACAAACGAACTGTCTGCTGCCCAGCTCGGCGTGCCCATTGAGGCGCCGCCATCGTATGATGTGGCAATAGCAGCACACACTCCTGCTCCCGCTACCGTTCCCGCTTCAGCGACGATTGTGAttgcgcagccgcagccacaacaacaaccaccacagCCACAACAGCTGGAGCCCACATTTGTGCAGACAGGTCCCACAAATCTGGGCCCGAATCCCTGCCGCGTGCTGTGTCCCGCCTGTGGCGTACAGAAGACCACTCGCATGACGCACACAGCCAACGCACGTACTCATATGGCCGCAGCGCTCATCTGCCTGGTGGGCTGGTGTGTCTGTGCCTGCTTTGTGCCCTATTGCATGAATAGCTGCCGCACGGGCAACCATTACTGCCGCAAGTGCAACACCTTTTTGGGTGTCTACAATCCGAAGGGTGTGAAATGA
- Protein Sequence
- MEQKRAMLYPQVDFNTPSAPLPTPTNELSAAQLGVPIEAPPSYDVAIAAHTPAPATVPASATIVIAQPQPQQQPPQPQQLEPTFVQTGPTNLGPNPCRVLCPACGVQKTTRMTHTANARTHMAAALICLVGWCVCACFVPYCMNSCRTGNHYCRKCNTFLGVYNPKGVK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00506529; iTF_00526981; iTF_00534984; iTF_00563568; iTF_00491186; iTF_00475620; iTF_00551254; iTF_00530622; iTF_00531358; iTF_00508769; iTF_01322311; iTF_01323055; iTF_01326833; iTF_01324566; iTF_00561416; iTF_00496258; iTF_00547734; iTF_00567927; iTF_00598551; iTF_00589220; iTF_00542111; iTF_00538633; iTF_00582633; iTF_00804050; iTF_00805638;
- 90% Identity
- iTF_00589220;
- 80% Identity
- -