Dvii006304.1
Basic Information
- Insect
- Drosophila virilis
- Gene Symbol
- -
- Assembly
- GCA_007989325.2
- Location
- CM017606.2:9430126-9431830[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 8.4e-17 1.7e-13 49.7 0.0 2 45 369 412 368 412 0.95 2 3 0.039 79 2.7 0.0 28 37 442 451 441 456 0.90 3 3 9.9e-21 2e-17 62.3 0.0 2 42 478 518 477 520 0.96
Sequence Information
- Coding Sequence
- ATGAATCACCTAAAATGGATGGGGCACTCGTCCACAATAATGGATATACAGCGCGTTTTGCTGCATCAACAAAGCAACAATCAACAATGCGAGGTATTGCTCGTGGCCAAAGACGGCATCAGTGTGCGCGCCCACCTTTTCGTACTGAGTACGTGCAGCGATCTAATGCGCAATCTGCTTGTCGATTTACCCGCCGGCCAGGAGGCAACTGTCATCCTGCCAGACATTCGTGGTGAGCTGCTCGAGAGCATGTTGTCGTTTATTTACATGGGAGAGACGAGCTTACCCTCCGCCCTGCTCACCGAGTTTCTCGAGGCCATTAATCTATTGGGCATAAAGTCTGCCATTAGTTTCGAAACCAATCCTACAGCCATGACCACCTCGAATGTTATAAGCGGCGCTATGGCGGTCGAAGCAGCCAAGTCAATAAGCGGCTTACACATTGCAAATACAGCTCTTatggaggaggaggaagaggAAGATGCTAGTGCGGTGGTCGGCAAACTGGAGGTAGGCAATGCAGTGCTCGCAAACCCCCAACAGCAGCATGAACAGGAAGGCCGAACCTTGGAATTCCTTGATGTGTATGGTGAACAGCCCAAAATAACATATTCGATTGAGCACATGGGTGGCACAAGCAGCGggaatcaatatatattaacagaGAACACGGGAACATTTACTATAACACAATCAGCATCGTCTGTGGCTAAATTAGGTGTGGCAGGAAGTTCAGCTGTGGTGGAATCTGTGGCGACTGGTGAGCTGGGCGATGATGATGCAGAGGCTGAAAATACGGACGAACAGGATGAATCGGAGTCACAGTTAATTGAGGAGGAGTATGTTGGATCAGGTGATCCGTTAATAGAGATGACCGCAGATGCCGATGTTGATATGCACGAAGATGGAATGCATGAAGGAGAACCTGGAGACGAGGAGGAAGATGATGAATTGCTGGATGTGAAACCCCGTGTTCATCTAGATATGAAAATGAGAAAACCAAAACCACGCCAACGGCCAATGTCGGCAAAGGTTACAAAAAAGACTATGACAAAACAGTATCAACAGCACGCCGCGCTTAAAAAGGAAAGCAAGGATGACATCAATGATGCCCTCGAtttggctgcagctgccgtACTTCACGAAGGTCTCAGCCTGCAAAAGGCTGCCGATCGCTACGACATATCGAAAACCGTGCTGTGGCGAAGAGTACGCTCCAATCCGGCCTACATGAGGATAAAGCGCGAAAAGCCATCGCTTTCGGAAGCATACGAACGCTTGAAAAACGGCGACTCGTTAAAAAGCATAAGTCAGGATCTGCATATACCCATGTCGACGCTGCACCGGCACAAAGTGCGGCTTGCGGCACAAGGACGGCTGCCCGATTTTGTTGCTTGCCGGCGGCGGGATAGCACACCAAAGGATGAGCTGCGCGACAAGCTGGCCAAGGCGGTGCATGCCTGCATAAACGGAGGCATGTCGCAGAATCATGCAGCAAATCTCTTCGAAATACCCAAAAGCACGCTCTGGCGGCACTTACAGCGCCGCGTGACCGAAGCGGAGCGTAAAGTCAAGGAGGAGCAGGAAGAGGACGAAGATGAGGATgttcttaattaa
- Protein Sequence
- MNHLKWMGHSSTIMDIQRVLLHQQSNNQQCEVLLVAKDGISVRAHLFVLSTCSDLMRNLLVDLPAGQEATVILPDIRGELLESMLSFIYMGETSLPSALLTEFLEAINLLGIKSAISFETNPTAMTTSNVISGAMAVEAAKSISGLHIANTALMEEEEEEDASAVVGKLEVGNAVLANPQQQHEQEGRTLEFLDVYGEQPKITYSIEHMGGTSSGNQYILTENTGTFTITQSASSVAKLGVAGSSAVVESVATGELGDDDAEAENTDEQDESESQLIEEEYVGSGDPLIEMTADADVDMHEDGMHEGEPGDEEEDDELLDVKPRVHLDMKMRKPKPRQRPMSAKVTKKTMTKQYQQHAALKKESKDDINDALDLAAAAVLHEGLSLQKAADRYDISKTVLWRRVRSNPAYMRIKREKPSLSEAYERLKNGDSLKSISQDLHIPMSTLHRHKVRLAAQGRLPDFVACRRRDSTPKDELRDKLAKAVHACINGGMSQNHAANLFEIPKSTLWRHLQRRVTEAERKVKEEQEEDEDEDVLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00549654;
- 90% Identity
- iTF_00512829;
- 80% Identity
- iTF_00617007;