Basic Information

Insect: Drosophila virilis
Gene Symbol: br
Assembly: GCA_007989325.2
Location: CM017608.2:9595419-9655732[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 4.1e-09 8.2e-06 25.1 0.0 16 40 699 725 695 728 0.84

2 4 4.6e-14 9.2e-11 40.9 0.1 2 39 740 777 739 780 0.94

3 4 1.1e-17 2.2e-14 52.6 0.0 1 45 794 839 794 839 0.98

4 4 1.1e-19 2.2e-16 59.0 0.0 1 43 846 889 846 890 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	4.1e-09	8.2e-06	25.1	0.0	16	40	699	725	695	728	0.84
2	4	4.6e-14	9.2e-11	40.9	0.1	2	39	740	777	739	780	0.94
3	4	1.1e-17	2.2e-14	52.6	0.0	1	45	794	839	794	839	0.98
4	4	1.1e-19	2.2e-16	59.0	0.0	1	43	846	889	846	890	0.97

Sequence Information

Coding Sequence: ATGGCTGCCGTGCGGGGACATCAATACTTTAGTCTACGCTGGAATAACTATCAGAACACGATGACGTCAGTGTTTCAGCAGCTGCGCGAGGATCTCTCCTTTGTCGATGTGACCTTGTCCTGTGAGCATGGCTCGCTCAAGGCACACAAGgTTGTTTTATCCGCCTGCTCGACGTATTTTCAAAAGCTGCTGCTCGAGAACCCGTGCAAGCATCCAACGATTATACTACCCGCCGACATCATATTCACAGATCTGAAAACAATTATCGATTTTGTTTATCGCGGCGAAATCGACGTAACCGAATCGGACCTACAGGGCTTGCTGCGCACCGCAGaacaattgaaaatcaaaGGCCTCTGCGAGCCGGCTGAGAATGCGGATGATTTAAATGACGCGGCATCGGCGACAATAACCGTATCGGAGAACATACAGCAGGCGGTTGTTGGGAACATTGTGAACGCGAGCCTAGTGCCCGGCGCGCCCTCGCCCACaatcgagcagcagcaacagcaccatcagcagcaacaacagcaacaacagcagcagcagcaacagcagcagcaacagcagcagcagcagcaacaggagcaactGGTGAATAGTGCGCTGCTGACACAGCATACGCTTGCAACAATCAGTGGCATACAGTTGGCCAACGCGGCCGGTCAGCAGCTGCTGAGCAACACAGGCGGCGGCACAAGCAGCAgcttgcaacagttgcagcagcagcaacagcagcagcagcagcagcagcaattgcagccAACGCCGCGTAAATCGCGACTGCGTAAACGCTCCAAATCGCCAGATTTGCAACTGGGTGGCAACGCCGCCGGCCAGCAACCACAGCCGGcacaccaccagcagcaacagcaacaacaacatcagcaacaacagcatcagcaacaacaacagcaacaacaacaacaacaccatcaTCCGCAAACGATACTCATCCAGGGACAAAATCAAACATCGATCGTGAGTCTACAGCAAACAGCAGACGGCAATTATATACCAGTGGCAACAGCTGGCGACGACTCCGATAGCGATAACAAGCCGCAAAAGATCTGCAAGACAGAGCAGTCGGTGGCCTCGCCGGCATCCAACTCGTCCACATCGAATAATGCAGCGGGCGTGAGCGGCCAGGCGATTGTGACACAAATTGTAGTAGCGCGCGACGGAAAAGATAAAAATATGACTAGTTTAGGCATGGGCATGAACGGCGGTCTGTTGGGCGTGCCCATGGGCTTTCTGGACTTCACACCGGAACCACCAGCACCATCGGCCACACCAGTCACCGTTACGGAACACGTCGATCTATCGTGCAACCCCAGCACCGATACACGCGATCTATCAAATCCCACCGAACCGCTCGACATTGACAATCATTTGGCTCAGCACATCCATCGGCTCGATCAATCTCCCATGCACTCAATATCACATCACCATGCAACCGGGGACGAGAGCAACTCGAATCTGGCGCAGCATATCAAAAGTGAGGTGATTGAGGCCAAGCACCTGGTGcatgtgcaacagcagcagcagcaacaacaacaacaacagcaacaacagcaacaacagcaacaacagcaacaacagcaacagcaacaacatgcacATCATCACCAGCACTTGCATGCCCAGCAATTGCTGGCGCAgagtcagcaacagcaacaccagcagcagcagcagcaacaacagcagcaacagcagcagcagcagcaggcggcggtGCATGCGGCACAGCATGCAGCGCTTGCAACGCATGCAGAAATCGGTGGCGCCACCGTCATGGAGATTGATCCGAGCCAGATCAAGCATGAGCCGGGCATGATTATAACGCCAGAGATTGTCAATATGATGTCCACCGGGCATATGGACATGTACAACTCGGATACGAGCGAGGACTCAATGATGATCGCCAACGGTTCGCCGCACGATCAGAATGAGCCGCATTATACGAATTTGGATCAGCAGCACGGCGGCCTGGGTGGCAGCGTTTGCGGCCCCGGCGCCGGtggtgttggtggtggtggtggtggcggcaTTGGTGGTGGTGGTAGTGCTGGCGAGAAAGATGCATTAAAGAATCAAAACATGAGCCTGACGAAAGCATCTGCCATTTATGGCATACCATCAACGACCTTATGGCAGCGTGCTCATCGTTTGGGCATCGAAACGCCTAAGAAGGAGGGCGGTACCAAATCGTGGAACGAGGATGCCTTACAGAATGCCTTGGAGGCGTTGCGTTCGGGTCAAATATCGGCTAATAAAGCATCCAAAGCGTTTGGTATACCCTCATCGACGCTCTACAAGATTGCGCGTCGCGAGGGCATACGGCTGGCGGCGCCATTCAATGCCGCACCAACCACGTGGACACCCGAGGATTTGGAGCGTGCATTGGAGGCGATACGCGCCGGCAATACGTCTGTACAAAAAGCAAGTGCCGAATTCGGCATACCGACAGGAACACTTTATGGACGCTGCAAACGGGAGGGCATCGAACTGTCGCGTTCGAATCCAACACCTTGGTCCGAGGATGCCATGAACGAGGCATTGAACTCAGTGCGCGTCGGTCAAATGTCCATCAATCAGGCGGCCATACACTACAACCTGCCCTACAGTTCGCTCTACGGACGCTTCAAGCGTGGCAAATACGATGTCGTGGCCAATACCAGTGGCATTTCCCTCAACAATACATCGGGCAACACGACCGGCAGCATTGAGATTATCGAGCATAGTCAAGAGAATTCGCAACAGTTCCCGTACAGTCCGTCGCCGCATCCGCCGACGCCGCAGCACCACGGCACGCCGCAGCACCATGGCGCGCCGCAGCATCATAGCACGCCGATGCATCACAGTACACCGCAGCATCACAGTTCGCAGCAGGGTCCGCCGACGCCGCAGGGCATGCAACAGCACGTGGTgcacatgcagcagcagcagcagtcgccgcATCAGGCacaccatcagcagcagcagcagcatatgcAACAGGATGTGGTCACATCGAGCAGCCAGGTGGTGCatagccagcaacagcagcaacagcagcagcagcagcagcagcagcttcagcaGATCTATCAGCATCACGGCACGCCCGAGCGTAGTTGA
Protein Sequence: MAAVRGHQYFSLRWNNYQNTMTSVFQQLREDLSFVDVTLSCEHGSLKAHKVVLSACSTYFQKLLLENPCKHPTIILPADIIFTDLKTIIDFVYRGEIDVTESDLQGLLRTAEQLKIKGLCEPAENADDLNDAASATITVSENIQQAVVGNIVNASLVPGAPSPTIEQQQQHHQQQQQQQQQQQQQQQQQQQQQQQEQLVNSALLTQHTLATISGIQLANAAGQQLLSNTGGGTSSSLQQLQQQQQQQQQQQQLQPTPRKSRLRKRSKSPDLQLGGNAAGQQPQPAHHQQQQQQQHQQQQHQQQQQQQQQQHHHPQTILIQGQNQTSIVSLQQTADGNYIPVATAGDDSDSDNKPQKICKTEQSVASPASNSSTSNNAAGVSGQAIVTQIVVARDGKDKNMTSLGMGMNGGLLGVPMGFLDFTPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEPLDIDNHLAQHIHRLDQSPMHSISHHHATGDESNSNLAQHIKSEVIEAKHLVHVQQQQQQQQQQQQQQQQQQQQQQQQQQQHAHHHQHLHAQQLLAQSQQQQHQQQQQQQQQQQQQQQQAAVHAAQHAALATHAEIGGATVMEIDPSQIKHEPGMIITPEIVNMMSTGHMDMYNSDTSEDSMMIANGSPHDQNEPHYTNLDQQHGGLGGSVCGPGAGGVGGGGGGGIGGGGSAGEKDALKNQNMSLTKASAIYGIPSTTLWQRAHRLGIETPKKEGGTKSWNEDALQNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVVANTSGISLNNTSGNTTGSIEIIEHSQENSQQFPYSPSPHPPTPQHHGTPQHHGAPQHHSTPMHHSTPQHHSSQQGPPTPQGMQQHVVHMQQQQQSPHQAHHQQQQQHMQQDVVTSSSQVVHSQQQQQQQQQQQQQLQQIYQHHGTPERS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00512640;
90% Identity: iTF_00616988;
80% Identity: iTF_00616988;