Basic Information

Gene Symbol
ct
Assembly
GCA_035043025.1
Location
JAWNNF010000024.1:16089852-16133152[+]

Transcription Factor Domain

TF Family
CUT
Domain
Homeobox|CUT
PFAM
PF02376
TF Group
Helix-turn-helix
Description
The CUT domain is a DNA-binding motif which can bind independently or in cooperation with the homeodomain, often found downstream of the CUT domain. Multiple copies of the CUT domain can exist in one protein (eg Swiss:P10180).
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 3 1e-26 8.5e-23 80.0 0.0 3 71 1113 1182 1111 1188 0.94
2 3 7e-32 5.7e-28 96.6 0.0 3 77 1596 1671 1594 1673 0.96
3 3 4.2e-31 3.4e-27 94.1 0.0 3 76 1886 1960 1884 1963 0.96

Sequence Information

Coding Sequence
ATGTACGATTGGTCAGCGGGTGAGGCAGATACGTGCATGTCCAGCTGCAAAAAGCGCGCTACACTAGCCGAGAAGGAAGTGAACACACTCAAGGAACAACTATCCACAGGCACgccaggcagcaacagcgataacagcaacagcgacaacagcaatacaacaacagcagcagcggcagcggcagcggcattggcattggccagCGGCGAAGAGGAAGCCACTGGGAACAGCGAAAGTGAGAACGACAAGCTGCTGAATAGCTCGATTGTTGCAGCGGCCATAACGCTGCAACAGAACGGCGGCAATCTGCTAGCCAACACAAATACACCGTCGCCATCGCCGCCGTTGCTGAgtgccgagcagcagcaacagttgcagagCAGCCTGCAGAACGGCGTCGGTGGCGCTTGTTTAAATCCCAAGCTCTTCTTCAATCACGCACAGCAAATGATGATGGAAgcggcagcggctgctgcggcggcagcagctgcagcggcagcacaacaacagcagcaacaatcgccCATGCACTCGCCCGTTGCTGCAACAAACAAtacgcaagcagcagcagcagctgcagcaactgcaacaacagcaggcgtTACACAGCAGCAATCAACACGCGATCTTGCTGAGGCAACAGCAAGTAGCAATTGCATCGACGACGATGGcgaggacgacgacgaggaggatGCTTCGATGCAATCAAATGTGGCGCATGCCGATGGTGATCTAGACGATGATGATATGGAGTTGGAGCCGGAGCATGTTGCTGATGGCGGTAGTGTTGCTGCCGCTAAGTCATTGGCAAGAACTGATAGCATTGGCGATGCGAATGCAACACATAATGTTGATGATGGTCATCATcgtggtgatgatgatgatgacgatgttgCCGATGTGGCTACCGATGAGCATGAGGATGACGAGGAAGCTAGTTTAAATATTAGCaataatcacaacaacaacaacaacaataataataacagcaacaacactgaTAGAAACAATAGCTGTAGTcgaaagagcaacaacagtgaGGCGCAACATGTTGCACTGCGTGATAATAATGTAAATGAGCAACATGTGGCACATTGCGCTGAGGACGACGATTGCACCAATAACAATactaacaccaacaacaacaacaccaacagcaacagcaatgagaAGCGCAAAAAGCGCaatgcaagcaacaacaacaacaacaataacaacaacaataatcagcCCGCTGTTCTATTAGCTGCCAAAGACAAAGAGGTAAGCAATCCATATTCATCGCTCACAAGCATTAAAGCACTTTTGGATGAGTTGCAACGCCTGCGTGGCCTGGAACAAACTCACCTTGTACAAATCCAAAGGCTCGAAGAGCATTTGGAGGTGAAGCGACAGCACATAATGCGTTTGGAGGCACGTTTGGATAAACAACAGATAAATGAGGCACTTGCCGAGGCAACTGCATTGGCTGCCGCTGTTAATGCGGCTGcgacaaacaataacaacaacaacaacaacaacaacaatagcagcagcaacaacaacaacaataataataatcacagTAGCCAGGgcagcgaaaacaacaacgagtTGAGCGCGGTGTTTAAATCAACAGATCTAACATCTACCCATCAGCACAATGACGATgaagacgatgatgatgataatgataacgACAACGATAATGATAATCATGCTGAGCTGCGCGATGATGGcgacgatgatgaggaggacACGGATATGgccaacgagcagcagcatgcTGCCATTGGCAACAATCGGCACAACGATGATAACGAAAAGGATGAGGACGAGGAGCAGGATGCCGATCTATCCAATGCCACAGCCGCAGCGGACAGCAATGAGCTGAAAATCAAAAAGGAACAGCACAGTCCACTGGATTTGAATGTGCTTAGCCCACATTCGGCGATTGCCACAGCTGCGgcggccgcagcagccgcagcagccgctgccTGCGCCAACGATCCGAACAAATTCCAAGCTTTGCTCCTGGAACGCACCAAAGCGCTGGCCGCCGAGGCTCTGAAGAATGGCGCCAGCGAGACAGCGAATGCAAGCAGTGATGaAACAATCACAAATGCAACGGAAAAGCCTGAAAATGATGCATTGACCGAGGCCAACTTGCAGCCCAAAATCGAAATCATTGACACAGACGATGCTGATGGGGGGGCCGGCACTGAGATTGCCGCTGGGCAAACACTGGAAGAACAGCTGGTCAATAGCTATTGGAGGCGCGGCTTTGAAACatcaacagtagcagcagcagcagccgcagcagcagcagcaacgacaacagcagcagcaacagcagctgcaacagcagctgcagcagccactgGGAGCAAAACGCCaacaatttatcaaaatgccaatgtggtgcagcagcaactgttgccgccaccgccgccgccgctgccgccgtcacaacagcagcagcagcagcagcagcacttttctgcacagcaacaacaacaacaacaatatcaccaacagcaacaacaacaacaacaacagcagcagcaacatggaCCCTCGTCCACAGTGCTACTAAGTCAATTGGTTAACTCAACTTTCTTACATGCCAATCACTCCTCTTGTTCCAATTCCAAATCCACACGCCTAGATGCCGCAtcccaccaccaacaccagcagcatcagccacagcagcagcagcagcagcagctgcttcaacagcagcaacatcaccacaacagcagcaatagcagcaacagtagtTCAGCAGCCGGCAGCGATCCACTGAatccacatcatcatcatgcgcACCACCATGGCCATCCACATGGACAGCTGTTGCATGCAGCACATCATCTGCATCACGGCGCCGACTCGAACTCATCCAGCGCCAATAGCACACCCAACAGCACCGCCCAGCTGGCGGCCAGCATTGCCAGCACGCTGAATGGCAACAAGTCACTGTTGCAGGCAGCGGCCGCTGCCaatgtggcagctgttgctgccgttgccgaggataacaacaacagcctgACGCCAAATGCGAATGCGGCTGTCGCCGCTGCAGCAATGGCTGCCCATGCACAGCACGCGGCCGCATTGGGTGCACCCAGTTTTCTGCCCAATTTGCCCAGCCTGCCGGCGTTTCAATTTGcggccgccgctgccgctggcCAGGATCCTCGAGCACAGCATTTTCGCTTCGCGGATGCCGAACTGCAAATGCAGCCGGGCGTCTCGATGGCCGGTCGATTGGGTGAATCGCTAATACCCAAAGGTGATCCCATGGAGGCCAAACTGCAGGAGATGCTGCGCTACAACATGGACAAGTATGCGAATCAGGCGCTCGACACACTTCACATCTCGCGACGCGTACGCGAACTGCTCTCCGTGCATAATATCGGGCAGCGGCTGTttgccaaatatatattgggaCTGTCGCAGGGCACCGTCTCCGAGCTGCTGAGCAAGCCAAAGCCCTGGGATAAGCTAACCGAGAAGGGTCGTGACAGTTACCGCAAGATGCACGCCTGGGCCTGTGATGATAGTGCCGTCATGCTCCTCAAGTCCCTCATCCCCAAGAAAGATTCGGGATTGCCACAGTATGCTGGTCGCGGCGCTGGTGGCGATGATTCCATGTCCGAGGATCGCCTTGCACACATACTCAGCGAGGCCTCGTCCCTGATGAAGAGCAGCGCTGTCGCcgcacagcagcaggagcatcAGCGTCGCCATGTCGTCGACGATACGCACAGCAACGAGGATAGCAAATCGCCGCCGCAGAGCTGCAGCTCCCCCTTCTACAAGGACCAGCAGATTAAGCAtctgcagccgcagcagcagcaacagctgcagcatgCCACCGAGCATGCACAGCGCGAACAGCGCGAAGCGGCCGCCGCCGTTGTTGCCgtacaccagcagcagcagcagcagcagcgggagcaGCGCGAACAGCGCGAGGCCGCTCAgcgtgagcagcagcagcgcattcGTCACGACGAACTGGGACCGGACAAGATGGCGCGTCTCTACCAGGAGCTAATGACGCGCACGCCACGCGAAGCAGCCTTCCCAAGCTTTTTGTTGACGCCGTTCTTTGGCGGAGCCGCTGGCATGCCTGGAGCAACCGCCAATCCATTCCCCACAGCAATGGCCGCCGACGAGAATATGCGTCATGTGCTCGAACGTGAGATAGccaagctgcaacagcagcaggcacagcaGGTGCAGCAGGCTGCCAGTTTTCCCAACTTTTCCAGTTTGAtggcactgcagcagcaggtgctgAACGGTGCGCAGGATCTATCGCTGGCCAACAAGGATATCAAGTTAAATGGACAGCGCTCATCGCTCGACCAGCAcagtggcggcagcagcagctgctcaaagGATGGAGAACGTGGCGACGATAACGACAGAAGCTATCCATCGCTATCGCATGCTGCACGCAAATCGGAGGGCGGCAACACACCAGCACCGCCCGCACCATCACTAACACAGACATCGGcgggcagcggcagcaattcAAATGCAGCCAACTCAACAGTTGCCAGCGGTCATGGCAGCAACTCAGCGGCACCCAGTCCGCTGAGCAACTCAATACTGCCGCCAGCGCTGAGCAATCAGGGTGAGGAGTTTGCGGCGACGGCGAGTCCACTGCAGCGAATGGCATCGATTACCAATTCACTGATTACACAGCCGCCTGTGACGCCGCATCATTCGCAGCCGCAGCGGCCAACGAAGGCGGTGCTGCCACCGATCACACAGCAACAGTTCGATATGTTCAACAATCTGAACACCGAGGATATTGTGAGGCGTGTGAAGGAGGCGCTCTCCCAGTACAGCATCTCGCAGCGTTTATTCGGTGAGTCTGTGTTGGGATTGTCGCAGGGTTCCGTTTCGGATTTGCTGGCACGACCCAAGCCTTGGCATATGCTGACACAAAAGGGTCGCGAGCCGTTCATACGCATGAAGATGTTCCTCGAGGATGACAATGCGGTGCATAAACTGGTCGCCAGCCAGTATAAGATTGCGCCTGAGAAACTGATGCGCACGGGCAGCTACAGCGGCAGCCCCCAGATGCCCCAAGgattggccaacaaaatgcagGCGACGCTGCCCATGCAAAAGATGATGAATGAGCTGAAGTTGCAGGAGCCGGCGCAGGCGCAACACATCATGCAACAGATGCAAGCAGCCGCCGCAATGTCGGCagcaatgcaacagcaacagcaggcagctgcCGCTCAAGCTGCCGCCGTACAACAGGCGCAGGCACAGGCTCAAGCTCAGGCCAGCCAGCACCAGCAGgcgcagcatcaacagcagcagcatcaacaggtgcatcagcatcagcaggccCAACAGCAGGCGCAGGcgcaggcacaggcacaggcgcAGTTGCTGCATCATCAGAATATGCTGCTGACGTCGCCCGGTTTGCCGCCGCAACACGCAATCAGTTTGCCAGCGGCGGTCACCCCAAGTGGCATCCAATCGGGTGCAGGCAATCCAGCGGCAGCGGGCAGCACTCCGGGCAGCAACGAGAAGAAGCCAATGATGATGCCGGTGCTGGGTGGTGCACATGCACCAAATGCAATGCGCAGTCTGCATCAGCATATGTCGCCCACGGTTTACGAGATGGCCGCACTCACCCAAGATCTGGACACGCACGATATAACAACGAAAATTAAGGAGGCTCTGCTCGCCAACAACATTGGCCAGAAGATCTTTGGCGAGGCGGTGCTGGGTCTGTCGCAGGGCTCCGTCTCGGAGCTGCTCAGCAAACCGAAGCCGTGGCACATGCTCTCGATCAAGGGTCGTGAACCGTTCATTCGCATGCAGCTGTGGCTGAGCGATGCCAACAATGTGGAGCGTCTGCAGCTGCTGAAGAACGAACGACGGGAGGCGAGCAAGCGGCGACGCAGCACTGGCCCCAACCAGcaggacaacagcagcgataCGTCCAGCAATGATACGAATGATTTCTATACGAGTAGCCCGGGACCGGGCTCTGTCGGTTCATCGGTGGGCGGTGCACCGCCAAGCAAGAAACAGCGTGTCCTCTTCTCCGAGGAGCAAAAGGAGGCGCTGCGTTTGGCATTTGCGCTGGATCCGTATCCGAATGTCGGCACCATTGAGTTTCTTGCCAACGAGCTGAGCTTAGCGACGCGCACCATCACCAACTGGTTCCACAATCATCGCATGCGGCTCAAGCAGCAGGTACCCCATGGCCAGCCAGGCCAGGACAATCCCATACCCAGTCGCGAGAACACAAATGCAACGCCCTTCGATCCCGTCCAGTTTCGCAtactgctgcagcagcgtctCGTCGAGCTGCACAAGGAACGCATGGGCTTGAGTGGTGCGCCCATTCCCTACCCACCGTAtttcgcagctgctgcactgcTCGGTCGCAGCCTGGCCGGCATACCGggtgcggcggctgctgccggtgcagcggcagctgcgGCTGCCGCAGTGGGTGCCGCCGGCGGCGATGAGCTGCAGGCACTAAATCAGGCATTCAAGGAACAGATGAGCGGCTTGGATTTGTCGATGCCAACGCTGAAGCGCGAGCGCAGCGATGACTATCAGGATGAGCTCGAGCTGGACGCCAGCGGACACAACATGAGCGACAACGAGTCCATCGAGGGTGGCAGCCACGAGCCGGAGCATACACACATCACCGAATACGAGAAGGCGCTGCAGAAATCGGCGCTCGCTTCGGCTGCGGCCGCTGCTGCATATATGAGCAATGCGGCGCGCAGTTCGCGTCGCAAGCCGGCGGCACCGCAGTGGGTCAATCCGGCGGGTGCCAGCACACCGACAGCGGCTGGCGTCGTCGCGAGCAACGCTGGCGTCgacatcggcagcagcagcagcgagcggaTCATCAACGGTGTCTGCGTCATGCAAGGCTCCGACTACAATCGCGATGAGAGCGACAGCATCAAAGGTGGCGGCGGCGACTCCAATGCTGCCGATGCCGAGCACGACGATCACGCCCAGCTGGAGATTGAGCAGCGTTTTATGGAGCCCGAGGTGCGCATCAAGCAGGAAGAGGACGACGAGGACGAAcaagcccagcagcagcaaaagcagcagttaGACGATGCAACGCCTCTCGACAGCGATGCGGAGAAGCAGCTCAACGTGATCAATGAGGAAAAGTTGCGTTTGGTGCGCGTGCGGCGCCTCAGCAGCAATGGCGATGCCGACGAGCACTGCGCTGCACAGCAAGCGACGGCAGCCGGTGTGGCAGCGTCGCCGGCAGCAACATCATGGAACTACTAA
Protein Sequence
MYDWSAGEADTCMSSCKKRATLAEKEVNTLKEQLSTGTPGSNSDNSNSDNSNTTTAAAAAAAALALASGEEEATGNSESENDKLLNSSIVAAAITLQQNGGNLLANTNTPSPSPPLLSAEQQQQLQSSLQNGVGGACLNPKLFFNHAQQMMMEAAAAAAAAAAAAAAQQQQQQSPMHSPVAATNNTQAAAAAAATATTAGVTQQQSTRDLAEATASSNCIDDDGEDDDEEDASMQSNVAHADGDLDDDDMELEPEHVADGGSVAAAKSLARTDSIGDANATHNVDDGHHRGDDDDDDVADVATDEHEDDEEASLNISNNHNNNNNNNNNSNNTDRNNSCSRKSNNSEAQHVALRDNNVNEQHVAHCAEDDDCTNNNTNTNNNNTNSNSNEKRKKRNASNNNNNNNNNNNQPAVLLAAKDKEVSNPYSSLTSIKALLDELQRLRGLEQTHLVQIQRLEEHLEVKRQHIMRLEARLDKQQINEALAEATALAAAVNAAATNNNNNNNNNNNSSSNNNNNNNNHSSQGSENNNELSAVFKSTDLTSTHQHNDDEDDDDDNDNDNDNDNHAELRDDGDDDEEDTDMANEQQHAAIGNNRHNDDNEKDEDEEQDADLSNATAAADSNELKIKKEQHSPLDLNVLSPHSAIATAAAAAAAAAAAACANDPNKFQALLLERTKALAAEALKNGASETANASSDETITNATEKPENDALTEANLQPKIEIIDTDDADGGAGTEIAAGQTLEEQLVNSYWRRGFETSTVAAAAAAAAAATTTAAATAAATAAAAATGSKTPTIYQNANVVQQQLLPPPPPPLPPSQQQQQQQQHFSAQQQQQQQYHQQQQQQQQQQQQHGPSSTVLLSQLVNSTFLHANHSSCSNSKSTRLDAASHHQHQQHQPQQQQQQQLLQQQQHHHNSSNSSNSSSAAGSDPLNPHHHHAHHHGHPHGQLLHAAHHLHHGADSNSSSANSTPNSTAQLAASIASTLNGNKSLLQAAAAANVAAVAAVAEDNNNSLTPNANAAVAAAAMAAHAQHAAALGAPSFLPNLPSLPAFQFAAAAAAGQDPRAQHFRFADAELQMQPGVSMAGRLGESLIPKGDPMEAKLQEMLRYNMDKYANQALDTLHISRRVRELLSVHNIGQRLFAKYILGLSQGTVSELLSKPKPWDKLTEKGRDSYRKMHAWACDDSAVMLLKSLIPKKDSGLPQYAGRGAGGDDSMSEDRLAHILSEASSLMKSSAVAAQQQEHQRRHVVDDTHSNEDSKSPPQSCSSPFYKDQQIKHLQPQQQQQLQHATEHAQREQREAAAAVVAVHQQQQQQQREQREQREAAQREQQQRIRHDELGPDKMARLYQELMTRTPREAAFPSFLLTPFFGGAAGMPGATANPFPTAMAADENMRHVLEREIAKLQQQQAQQVQQAASFPNFSSLMALQQQVLNGAQDLSLANKDIKLNGQRSSLDQHSGGSSSCSKDGERGDDNDRSYPSLSHAARKSEGGNTPAPPAPSLTQTSAGSGSNSNAANSTVASGHGSNSAAPSPLSNSILPPALSNQGEEFAATASPLQRMASITNSLITQPPVTPHHSQPQRPTKAVLPPITQQQFDMFNNLNTEDIVRRVKEALSQYSISQRLFGESVLGLSQGSVSDLLARPKPWHMLTQKGREPFIRMKMFLEDDNAVHKLVASQYKIAPEKLMRTGSYSGSPQMPQGLANKMQATLPMQKMMNELKLQEPAQAQHIMQQMQAAAAMSAAMQQQQQAAAAQAAAVQQAQAQAQAQASQHQQAQHQQQQHQQVHQHQQAQQQAQAQAQAQAQLLHHQNMLLTSPGLPPQHAISLPAAVTPSGIQSGAGNPAAAGSTPGSNEKKPMMMPVLGGAHAPNAMRSLHQHMSPTVYEMAALTQDLDTHDITTKIKEALLANNIGQKIFGEAVLGLSQGSVSELLSKPKPWHMLSIKGREPFIRMQLWLSDANNVERLQLLKNERREASKRRRSTGPNQQDNSSDTSSNDTNDFYTSSPGPGSVGSSVGGAPPSKKQRVLFSEEQKEALRLAFALDPYPNVGTIEFLANELSLATRTITNWFHNHRMRLKQQVPHGQPGQDNPIPSRENTNATPFDPVQFRILLQQRLVELHKERMGLSGAPIPYPPYFAAAALLGRSLAGIPGAAAAAGAAAAAAAAVGAAGGDELQALNQAFKEQMSGLDLSMPTLKRERSDDYQDELELDASGHNMSDNESIEGGSHEPEHTHITEYEKALQKSALASAAAAAAYMSNAARSSRRKPAAPQWVNPAGASTPTAAGVVASNAGVDIGSSSSERIINGVCVMQGSDYNRDESDSIKGGGGDSNAADAEHDDHAQLEIEQRFMEPEVRIKQEEDDEDEQAQQQQKQQLDDATPLDSDAEKQLNVINEEKLRLVRVRRLSSNGDADEHCAAQQATAAGVAASPAATSWNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00495757;
90% Identity
iTF_00494897;
80% Identity
iTF_00616096;