Dvar000471.1
Basic Information
- Insect
- Drosophila varians
- Gene Symbol
- dsx
- Assembly
- GCA_018150405.1
- Location
- JAECWK010000129.1:5015251-5018639[+]
Transcription Factor Domain
- TF Family
- DM
- Domain
- DM domain
- PFAM
- PF00751
- TF Group
- Zinc-Coordinating Group
- Description
- The DM domain is named after dsx and mab-3 [2]. dsx contains a single amino-terminal DM domain, whereas mab-3 contains two amino-terminal domains. The DM domain has a pattern of conserved zinc chelating residues C2H2C4 [1]. The dsx DM domain has been shown to dimerise and bind palindromic DNA [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.6e-24 6.1e-21 73.8 10.4 2 47 41 86 40 86 0.97 2 3 4 1.5e+04 -11.2 8.6 10 21 142 153 140 155 0.83 3 3 0.92 3.5e+03 -2.3 0.0 33 43 372 382 369 384 0.83
Sequence Information
- Coding Sequence
- ATGGTTTCGGAGGAGAACTGGAACAGCGACACTATGTCCGACTCGGACATGATTGATTCCAAGAACGATGTGTGCGGCGGGGCATCCAGCTCCAGCGGTAGCTCCATCTCGCCCCGGACGCCGCCCAACTGCGCCCGCTGCCGCAACCACGGATTGAAGATCACGCTGAAGGGCCACAAGCGGTACTGCAAGTACCGCTACTGCACTTGCGAGAAGTGCCGCCTCACGGCGGACCGCCAGAGGGTGATGGCTTTACAGACGGCGCTGAGACGGGCCCAGGCCCAGGACGAGCAGCGGGCGCTCCACATGCACGAGGTGCCGCCGGCGACACCGGGCACCACCGCCCTGCTCACACACCACCACCATGCCGCCGCTGCCGTCGCCGTCGCCGCCGCCCCCGCACACGTCCACGCCCATGCCCACATGCATGGCGCCCACCATGCCGCCCACGGACACCACTCGCACCACGGACATGTGCTGCACCACCAGCAAGCGGCGGTGGCAGCCGCAGCGGCGGCCCCTCCACCCCACTCCGCCGCCAGCCTGCACGGCCACGCCCATCATGTGCACATGGCCGCCGCCGCAGCAGCCTCAGTGCAGCACCAGCACCACCCTCACTCGCATCACACCCACCTCCAGCAGCCGCCGCACCACCAGCATCCGCAGCAGCATCCGGGCTCCCATCGATCGCCGCCCCACAGCGACCACGGACCGGCCACCAGCAGCTCTGGTGGGGCAGCCAGTTCCAGCACTACCACCGCTGCCACCTCCAGCAGCGGATCCAGTAGCAACGGCGGCGGCGTCGGCGGCGGGGCTGGCAGCACTGGCTCCGCATCGGGATCGGGAGGACCCGCTGGAGGAGGCCCCAGGGCCGGCAGCAGCGGCACCTCGGTGATCACCAGCGCCGACCACCACATGTCCACGGTGCCGACTCCCGCCCAGTCGCTGGAGGGTTCGTGCGACTCTTCGTCCCCCTCGCCGTCGTCCACTTCCGGCGCCGCCATTTTGCCGATCTCAGTCTCCGTCAACCGGAAGAATGGTGCCAATGTGCCATTAGACATGGATCCGACATTACGGCGATCGTTTAGCACAAGTGTAGACAATACGACCGATGTCTGTCAACTGTTGGCAGTTCGTCAATCAATTGGCCACCGCTCCTCCTCCTTGGCTCGCCCTCCTCCTCCTCCTCCGGACTCCCCAAACCCATGCGACAGTAGTCGGGTTGTGGCCCCGATGTCTGGAAATGTGTAA
- Protein Sequence
- MVSEENWNSDTMSDSDMIDSKNDVCGGASSSSGSSISPRTPPNCARCRNHGLKITLKGHKRYCKYRYCTCEKCRLTADRQRVMALQTALRRAQAQDEQRALHMHEVPPATPGTTALLTHHHHAAAAVAVAAAPAHVHAHAHMHGAHHAAHGHHSHHGHVLHHQQAAVAAAAAAPPPHSAASLHGHAHHVHMAAAAAASVQHQHHPHSHHTHLQQPPHHQHPQQHPGSHRSPPHSDHGPATSSSGGAASSSTTTAATSSSGSSSNGGGVGGGAGSTGSASGSGGPAGGGPRAGSSGTSVITSADHHMSTVPTPAQSLEGSCDSSSPSPSSTSGAAILPISVSVNRKNGANVPLDMDPTLRRSFSTSVDNTTDVCQLLAVRQSIGHRSSSLARPPPPPPDSPNPCDSSRVVAPMSGNV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00488037; iTF_00538980; iTF_00504006; iTF_00545982; iTF_00614922; iTF_00475946; iTF_00566107; iTF_00550268;
- 90% Identity
- iTF_00475946;
- 80% Identity
- -