Dvar010101.1
Basic Information
- Insect
- Drosophila varians
- Gene Symbol
- sba
- Assembly
- GCA_018150405.1
- Location
- JAECWK010000015.1:19794107-19800246[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9.9e-09 2.5e-05 23.6 0.1 9 59 212 253 204 277 0.79 2 2 0.18 4.5e+02 0.3 0.0 48 76 288 315 282 316 0.87
Sequence Information
- Coding Sequence
- ATGGCCGCTGCCTCCGCTGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACGAAATTTGTATCGCGGGTCGTTACAAGTGCAACATCGATGCAACATCAGCAACATACGCAACAGTTACTACCAGCTGGCTTGGTAAATGGCAATGGAAACGGCAACGGCAGCGTGATGCAACTGCAACAGCGCTCCACTCAACAGCAGCATATCTTTGTCTGTCCCACCAGCAGTCCCCAACTTCTCCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCAACTGTTGCTGCTGCTGTTACAGTTGCCAGTGGAGCTCATGGCCTGCCGACAACAATTGCATCGCGTCAATTGAGCCAGAACAATCAGCTGTATGCCAAGAATGTGGCCAAAGCCAACAGCCCCATTGCCAGTAACCAAACCAACAGGAAGTCCAATCCCAGCTACAATGGGAATTTGGCTCCTGGCTGGCGTCGCTTAACCAACAACAATGAGGTGGCCTACATCAGCCCCTCGGGAAAAACTCTGCGCACGCACTTCCAGATCAAGGACTACCTCCTCGCCCAGGGTACCTGCAAGTGCGGCCTTCCGTGTCCGCTGCGCCCGGAATACCTCTTCGACTTCAATGCCCAGTTTGACAACAAATCGACTGTGACGACGACGAAGACGGAGACCGGAGACGTCGAGTGCATAATCACAGAGCAAACCGAATGGAGAGTCCGGGCCAGAGATTTCGAGATCCGAGAGCCAACAGCCAAAAGATACTCCATGACCATCTGCCGCTGTGCTCTGGAGTAG
- Protein Sequence
- MAAASAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTKFVSRVVTSATSMQHQQHTQQLLPAGLVNGNGNGNGSVMQLQQRSTQQQHIFVCPTSSPQLLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATVAAAVTVASGAHGLPTTIASRQLSQNNQLYAKNVAKANSPIASNQTNRKSNPSYNGNLAPGWRRLTNNNEVAYISPSGKTLRTHFQIKDYLLAQGTCKCGLPCPLRPEYLFDFNAQFDNKSTVTTTKTETGDVECIITEQTEWRVRARDFEIREPTAKRYSMTICRCALE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -