Dvar003401.1
Basic Information
- Insect
- Drosophila varians
- Gene Symbol
- fru
- Assembly
- GCA_018150405.1
- Location
- JAECWK010000130.1:21025013-21027052[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.4e-12 8.4e-09 34.8 0.1 1 44 386 429 386 430 0.91
Sequence Information
- Coding Sequence
- ATGGGCGGCCCAACGGCGCCTGTGGCAAGCAGTGGCATTGGAGGCGGAGGCGGTGGTCCGCCGGAGGTGGGCCAGACGTACTGCCTCCGGTGGAACAACCATCAGACCAACTTGGTCCAGATCCTGCACGCCCTGCACGAGGTGGGCAGCTATGTGGACTGCACCCTGGTGGTGGACGACGAACAGTTCCAGGCCCACCGCGTGGTCTTGGCTGCCAACTCTCCCTATTTCCAGCACATCCTCCGGGACGTTCCGCAGGATCACTGCAGCATAATTCTACCAGGGGTAAAGGGCTTCGAAATAGCCGCCCTCCTACAGTACATGTACACCGGCGAAACGACGGTGACCAAGAGCCAGGAGCCGGAGATACTGCGCACCGCCAAGGAGCTGCAGGTCAAGGGCTTGTATGACAACCTCATGAAGTTCAACCATCAGGCCAGCGCCACCCCCACATCTAGCTCTGGCGCAGTGGGTGGCAAGCCCTCGAATGGCTCAGCCTCGCATCAACAGCAACACTCCTCGTCCGTGATCTCCACATCCACCCATATCTCGCCCAGTGCTGCAATCTCGAGCAGCTGCTCGCCACCACCGCCGGCGTTCCCGTCCTATCAGCCAGGGTTCAGCCACTACCCCACCGGCCAGATGGCAGCGGGTCAAATACCCTCCTCAGAGGCCCCGCTAACTCCCACCCATGCTCCAACCCATTCGGCACCCCACTCAGGGGCTGGCGACACCGGTGGTGGCCAGTGGCCACTTTCACCCTCTGCTGCCGCCGCTGCCATGCTAAACTCCGTCTACGAATCCGCCGCCGACATGAACCCTCTCAAGCGCAAGAAGCTCTCGGCTATCTCCAGCATGCTGCTTAGTGGCACTCGGGACACGCCTATTCTGCGCAACGTCCTGGCTCAGGCCAACCCGGCAGACTCCTCTCAGGCCAGTCCCCTGCAGATCATGAAGGGCGACAAGACCCCAACGCACCCCCAACAACAGAACCCCCATCACGCCGGCGGAATGGGTGTGGGAGAGCACAGCTTCAATGGATCTGATTACGGCGGCGACAAGGAGCCGTTGTCCCCGCACACAGACTGCTCCTTCGATGCGGAGAGCGGCAATTCTGGGGGCAAGAAACCAGAATGGAAGCGCTACAAGCAGTACACCCGAGCGGACATGATGTGCGCCATCCAGGCGGTACGGGAGGGAATGAGTGCTCTGCAGGCCAGTCGAAAGTATGGTCTCCCAAGCCGTACCCTGTACGACAAGGTACGCAAGTTAAACATCACCACTGGAAGAGGCACTCACCGGACACCCAAGCGCAGTCCACCTGGTGCTGAGTCCTCTTCGGGAGCCCAGTACTCGCCCTACTCTGCCGCAGCTGCCGCCGCTGCTGCCCACAACTACGGTGGCCACCCCCACGGGCATGGACATCATCAACCGGAGCACCTTGATCGGAAACAAAAGACCGGAGGCGACCATGGGCCTGCCCATCATGGCATGCCACCCACCATTCCTCACTCCGCAGCAGCCCTGCTGGACCATGCCTTCCTGCAGCAGGCTCTGGAGAATCGCGGAGGCGACATGGCCGGAAGGGAGGCCCTTCATGCCATGGCCTTGGCCGCCGCCGCCCACGCTGCCGCCAATCGCATGTCCAGCAGTCCGCCGGAGACGGACCATCACTCTAATGGCCACCATGGCATGCGTTCGCCGAGTCCCGATCGTCACTACCAGGAGGCCATGGACCTGGAGATGGAGAAGCACGAGCAGCGCTTGATCAAACGAGAGCGCGACCAAGATGAGCGCGAGGATGCGGACGACGAAGAGGATCAGGAGCAGGAACACGTCGAGGACCTGTCCCTGGCCCGGAAGGAGCGTCCTGAATCACCCTACTCCCCGCAACCTGCCGAGGGAGCGGGCGTGATCATGCACGCTGGAAGTGCTCCGACCAACGGAAAGGAGCACGAGGACTACCACCCAGCCGGCTCCCCCTTGGTTTTGAAACGAGAGCTCATTGGAGGCGAGGAGACTCAGGCCCGGGCCGACTGA
- Protein Sequence
- MGGPTAPVASSGIGGGGGGPPEVGQTYCLRWNNHQTNLVQILHALHEVGSYVDCTLVVDDEQFQAHRVVLAANSPYFQHILRDVPQDHCSIILPGVKGFEIAALLQYMYTGETTVTKSQEPEILRTAKELQVKGLYDNLMKFNHQASATPTSSSGAVGGKPSNGSASHQQQHSSSVISTSTHISPSAAISSSCSPPPPAFPSYQPGFSHYPTGQMAAGQIPSSEAPLTPTHAPTHSAPHSGAGDTGGGQWPLSPSAAAAAMLNSVYESAADMNPLKRKKLSAISSMLLSGTRDTPILRNVLAQANPADSSQASPLQIMKGDKTPTHPQQQNPHHAGGMGVGEHSFNGSDYGGDKEPLSPHTDCSFDAESGNSGGKKPEWKRYKQYTRADMMCAIQAVREGMSALQASRKYGLPSRTLYDKVRKLNITTGRGTHRTPKRSPPGAESSSGAQYSPYSAAAAAAAAHNYGGHPHGHGHHQPEHLDRKQKTGGDHGPAHHGMPPTIPHSAAALLDHAFLQQALENRGGDMAGREALHAMALAAAAHAAANRMSSSPPETDHHSNGHHGMRSPSPDRHYQEAMDLEMEKHEQRLIKRERDQDEREDADDEEDQEQEHVEDLSLARKERPESPYSPQPAEGAGVIMHAGSAPTNGKEHEDYHPAGSPLVLKRELIGGEETQARAD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00550182;
- 90% Identity
- iTF_00550330;
- 80% Identity
- iTF_00615646;