Dvar003470.1
Basic Information
- Insect
- Drosophila varians
- Gene Symbol
- lov
- Assembly
- GCA_018150405.1
- Location
- JAECWK010000130.1:21636613-21644360[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.78 1.5e+03 -1.2 0.0 22 40 284 304 276 307 0.81 2 2 8.2e-19 1.6e-15 56.3 0.0 1 44 793 836 793 837 0.96
Sequence Information
- Coding Sequence
- ATGTTAAAGGACGCCGACCAGGAGTTGATTAAACGCCGCCAACTGACGTCGCTCCCCATGACCGACTTCGCTCGCCAGGTGGCACCGCCCATCCAGCTGCCACTGCCGCTTCCGTTGCCGCTCAACCTGCCGCTACCGCTGCCGCTGCCCCTGCCCCTCTTGGCCAAGACGCCCGGCAGCGATCACGGCCCCATGCATTCCACGCCTCCCACAACGCCGCCCACGCCGCCCCCGCTGCCACTGAACATGAGCCAGACGAAGACCGCCGAGGCCACCAGCGGCCGACAAAGTCCTCCGGCCACGCCACCCTCATCGGGGGCGCCCATGGCCCATACCAGCACCGGGCCGCAGGATCACTACAGCCTGCGGTGGAACAACCACCAAAACCACATTCTGCGCGCCTTTGACGCCCTGCTGCAGACCAAAACCCTGGTGGACGTGACCCTGGTGTGCGCGGAGACCTCGATCCGGGCGCACAAGATGGTCCTCTCCGCCTGCTCCCCCTTCTTCCAGCGTGTGTTCGCAGAGACGCCCTGCAAGCACCCCGTGATCGTGCTCAAGGACTTCCGCGGTTGGGTGGTCCAGGCCATCGTTGACTTCATGTACCGCGGCGAGATCAGCGTGCCCCAGCAGAGGCTTCAGACGCTTATCCAGGCAGGAGAGTCGCTGCAGGTTCGCGGTCTGGTGGAAAGCTCCGTCCCGGAGCACACGCCTACGCCTGCCGCCTCGCCCGACGACTTCGGCATGCTCGACACATCCATGCTCTCCTCCAGCTTCGAGGACGATGGGCCTCCCTCGATGGTTCGCCCTCCCGGAGCGTCCGCCGGCAAGCAGCTTATGATGCCCTCCGCCGCTCGAATGTTCGGCAGCCACCACTCCAGCTTGCTGAGTCTGCGGCGCAAACGGGAACAGGAGCAGGAGCTGGAGAGCGACCAGGAACTGGGTGGCAGTTCTCCAATGCCGCGACGGAAGCAAGCGAGACCCCGTCGCCGATCCGGCGACGTGCCTCACGACTTCCCCCTCGGCACCAGCAAAACAGAGACCGAATCGCTGCAGACTGTGATTAAACACGAATTGCTGGATCGAACGGAGAGCAATCAGGAGGAGGCTGACCAGGACAACGAAGCCCGAAAGAACGGCTGCGCGGGGACGGAAACCTCCGAAGAGCAGGGCAAGGACAAGTCCGAGGATCGGTCAAGAAATGCCAATGATCACCGACTTGATCTTGACGAGGACGAAGATGAAGATGGCATGCAGGATCGGGACGATCATGAGGAGGAAGAGGAACAGGACATTGAAGAGCTTATTCACACGACCAACGAGCTGAGGCGACAGGCTGCCGCGGCTGCTGCCAACGCCGCGGCTGCCATGTCGCCCGCCCCCTCGCCCTGTCCAAGCGACGGACCCGAGGACCTCTGCACCACCAAGAAGGAAAAGAAGGACAGAAGCAGTCACGCAACGACCGGCCCCTCGTCTGACTGCGAATCAAACAACAACAACAACAGCAGCAAATTGCAGGACAACAACCAGCGCATCATGCTATCCCTCAAGGATATTCGACAGCTAAACGCCAATCCCAACGCCGGCCAAAATACTCCGACCAGCGGACCGGGATCTGGGTGCAACAACAACGGCTTGCTGGGCTTCCCACCTCCAGGAATGCGACCCCCAGGCCTCCCAGATAGCCCACCTTGCCACATGGAAGCCCTGGAGGCGCAGATGCACGCCGCCGCCGCCGCAGCCGCCGCAGCTGCGGCCGGCGACCATCCGTTCCACCACATGGAGCACCAGATGGAGATGTCCCTGGCAGCGGCCGCTGCGGCAGCCGCGATGCACCAGAGAGAGCCACGGGATCCCCGCGATCCCCGCGACCACAACGCATTTGCCAGCAACTTGCTGGGGCCAATGGGTATGTCCCCGTTCGGAGGACCCAACGGAGGGGGACCTCCGGGACAGAGTTCCGGTTCGGCAAGTGGCGGATGTCCTGGCCAGGCGCCGCACGAGAGGCTCGAGGAGAGCATGAACCGGTTAAGCAAGGAGCTGGGCAAGGAGTTTGGCAAGGACTTTGCCCCCACATCGCCAATGAGTCTGCCCGGGCACTTCAATCCTCCGGATGGACCACCGCATCCGCCTTCGCCGCTGCCCTTTCCCGGCATGTCCTCGGCCATGACGCTAACGCCGCCTCACATGTTCGGCCTGGACTCCCCACTCGGACTGTTCCCGCCCGGAATCGATCCTGGCAAGCTGTACAACCCGCTAATGGAAATGAGCGATCCGCGCGAGATGCCTGGCGGACCGCCGCCTTTCCTCAAAAAGAAAATGCCCCGACCCAAGGGCCAGCACTCGGCGCCTCGCGGAGGTCCCCCGCGATCCTGGACGAACACAGAGCTGACGGAAGCGCTCCAGCATGTGTGGAACAAGAAGATGACCACATCGCAGGCCTCGCGTATATTCGGGATCCCCTACAACTCGCTTTTGATGTACGTGCGGGGGAAGTACGGCAAGAGCCTGAAGCTGGAACAGCTGCGAAAGGACTGCATCAGCGGCCCGCCCATCGAGATGCTGCAGATGGGCATCAGCGGGGGCAACGGCAGTGGCGGCGGCAGCAGCTCCGGCAAAAGCGAGAAGAGCAAGGAACGCAAAGAGAAGGACAAGGACAAGGGCTCCTCCAGCAGCAACAACTCCGGCGGCTCTGGCAACTCATCATCGGGCGGACCAAGCTCTGGAAACGGACCCCATCATGGCGAAATGGGGCCGCTGGGCTCCCTCGACCTGGAGCTGGGCCTGCCTTTGGGACCACCGGGAGGACCGCGAAGCGGTAGCTCTGAGCCCGACCTGCTAGGCGGCCCCAACGCGCTCTTCAACCCCTTCAACCCGCAGGGCTTCTACCCAGACTTCTCCGGCGGCTTCCCCGGCCTGCCACTCAGCATGCTGAACCTGCTGCCGCCGTCGGAGCGACACCATGCGGCGGCCGCAATGCACCACCTGGGCGTGACCATGGACGAGGACTGTAAGTCCGTGGGCTCCAAGCAGTCTTCTTCACTGGACGACGACTTTCCGGGCTCTGGGCTGCCCCTGTCGCTGGAGCAGAGGCGGGAAATGGGAGCGAACGGACCGCCGCCGGTGGCCCAGTCGAACGGGAGCGCTGGACAGGATTGA
- Protein Sequence
- MLKDADQELIKRRQLTSLPMTDFARQVAPPIQLPLPLPLPLNLPLPLPLPLPLLAKTPGSDHGPMHSTPPTTPPTPPPLPLNMSQTKTAEATSGRQSPPATPPSSGAPMAHTSTGPQDHYSLRWNNHQNHILRAFDALLQTKTLVDVTLVCAETSIRAHKMVLSACSPFFQRVFAETPCKHPVIVLKDFRGWVVQAIVDFMYRGEISVPQQRLQTLIQAGESLQVRGLVESSVPEHTPTPAASPDDFGMLDTSMLSSSFEDDGPPSMVRPPGASAGKQLMMPSAARMFGSHHSSLLSLRRKREQEQELESDQELGGSSPMPRRKQARPRRRSGDVPHDFPLGTSKTETESLQTVIKHELLDRTESNQEEADQDNEARKNGCAGTETSEEQGKDKSEDRSRNANDHRLDLDEDEDEDGMQDRDDHEEEEEQDIEELIHTTNELRRQAAAAAANAAAAMSPAPSPCPSDGPEDLCTTKKEKKDRSSHATTGPSSDCESNNNNNSSKLQDNNQRIMLSLKDIRQLNANPNAGQNTPTSGPGSGCNNNGLLGFPPPGMRPPGLPDSPPCHMEALEAQMHAAAAAAAAAAAGDHPFHHMEHQMEMSLAAAAAAAAMHQREPRDPRDPRDHNAFASNLLGPMGMSPFGGPNGGGPPGQSSGSASGGCPGQAPHERLEESMNRLSKELGKEFGKDFAPTSPMSLPGHFNPPDGPPHPPSPLPFPGMSSAMTLTPPHMFGLDSPLGLFPPGIDPGKLYNPLMEMSDPREMPGGPPPFLKKKMPRPKGQHSAPRGGPPRSWTNTELTEALQHVWNKKMTTSQASRIFGIPYNSLLMYVRGKYGKSLKLEQLRKDCISGPPIEMLQMGISGGNGSGGGSSSGKSEKSKERKEKDKDKGSSSSNNSGGSGNSSSGGPSSGNGPHHGEMGPLGSLDLELGLPLGPPGGPRSGSSEPDLLGGPNALFNPFNPQGFYPDFSGGFPGLPLSMLNLLPPSERHHAAAAMHHLGVTMDEDCKSVGSKQSSSLDDDFPGSGLPLSLEQRREMGANGPPPVAQSNGSAGQD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00605660;
- 90% Identity
- iTF_00566173;
- 80% Identity
- iTF_00615650;