Dval000839.1
Basic Information
- Insect
- Drosophila vallismaia
- Gene Symbol
- -
- Assembly
- GCA_035047325.1
- Location
- JAWNPU010000001.1:7779774-7781194[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 8e-05 0.54 10.6 0.5 6 52 219 265 214 271 0.84 2 5 6.7e-07 0.0045 17.2 0.2 22 45 291 314 287 322 0.86 3 5 0.00062 4.2 7.7 0.4 12 44 337 369 327 379 0.77 4 5 0.097 6.5e+02 0.7 0.4 18 32 372 385 368 401 0.62 5 5 0.026 1.7e+02 2.6 0.2 20 35 402 417 392 429 0.78
Sequence Information
- Coding Sequence
- ATGGAGCATTCAACACGCTGCCGGGTGTGTGATGTTTCATCGTTCAACTGTCTGTCACTTTTCAAGCCCCATTTGATTCTCGGCGAAATAACGACCCTGGCCTTAGTTCTGACCTCCTGCAGCGGCCTAAAGCTCCTGGAGACGGAGGACTTCCTGCCACAGCACATCTGCCGGCCGTGTGTCTGCAAGCTGCGCCGTTCCTGGGAATTTAAGCTCGGTGCCTTGCAGACGGACAGGATTCTAAGGAAACGCCATAAGGATCTGAAGACGGATCAGGCTCGTGTGGAAGAATACGACGACGAGGAAGAAGAAGACTTGGAACAAGGCTTCGACCAAGAGTTGGACCAGGAACAGGACCGAGAACAGGACCAGGACCTGGACCAGGAACTAGATCTGGAGCGTGAGGAAGATATCGCCGAATCCTTGGTCCTAGAAGAGATGACCGGCGATCAGGACGAGCTGGAAATGAaggtggaggaggagctggcAGCCAAGGGCTGGAAGCCAGGTGGAGACGACCTGGAGGAAGTCCAGAATGTCATCATCGAAGAAACAAGTGAAAACGAGCTTTTCctagaggaggaggaggaggatgccCAGAATCACTATCAGATAATTGAAGAATCGCCGGAAGAGCAGTCTCAGTCGATCAGTGCGGAAACGCCACCGTCGGGCAACAGGATCAGACGCAATAAGAGCAATAATCCCTCCCTGAAATGTCCGATTTGCAGCAAGCAGCTGAGCACGAGCAACTCCTACAAGTACCACATGCAGCTGCATAGCGACGACAAGCCATTTGTGTGCCAGATCTGCGGGGAGTCCTTTAAAACCCGCAATGCCCACGACGGGCACGCCACGCTCCACGATCCGAACAACCCGAATACCTGCCCCACCTGCGGCAAAGTGTACCGGCAGGCCTCGTCGCTGCGCACCCACCTGCTCACCCACAGTGGCATCAAGCCGTACGAGTGCGGTATCTGCGGCAAGCGACTCACCCAGAAGTCGGGTTACAAGAAACACATGCTCACCCACACGGGCGAGAAGCCACACGAATGTGATATTTGCGGGCGAACCTTTCGCTATTCGAGCAACCTGATTGCCCATAAACGCAGCCACAGGCAGGAGAAACCGCACCGATGCCTCATCTGCCAGAAGCGCAGCTTCGGCAGCACCACGGAGCTCAATCGCCACATGCTCGTCCACAGCAGCGATCGTCCGTTCCAGTGCCCCGTTTGCGGCAAGACCTTTAAGCGTCGCGTGTCCCTCGGCCTGCACATCCAGTCTCACAAAAAGGAAGAACAAAATGCGAAGAGCAGCAGCGCCGCCATCAAGCAGAAATCTCTTGATGATGGCTGGAGTTAA
- Protein Sequence
- MEHSTRCRVCDVSSFNCLSLFKPHLILGEITTLALVLTSCSGLKLLETEDFLPQHICRPCVCKLRRSWEFKLGALQTDRILRKRHKDLKTDQARVEEYDDEEEEDLEQGFDQELDQEQDREQDQDLDQELDLEREEDIAESLVLEEMTGDQDELEMKVEEELAAKGWKPGGDDLEEVQNVIIEETSENELFLEEEEEDAQNHYQIIEESPEEQSQSISAETPPSGNRIRRNKSNNPSLKCPICSKQLSTSNSYKYHMQLHSDDKPFVCQICGESFKTRNAHDGHATLHDPNNPNTCPTCGKVYRQASSLRTHLLTHSGIKPYECGICGKRLTQKSGYKKHMLTHTGEKPHECDICGRTFRYSSNLIAHKRSHRQEKPHRCLICQKRSFGSTTELNRHMLVHSSDRPFQCPVCGKTFKRRVSLGLHIQSHKKEEQNAKSSSAAIKQKSLDDGWS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00546120;
- 90% Identity
- iTF_00546120;
- 80% Identity
- iTF_00615056;