Basic Information

Insect: Drosophila vallismaia
Gene Symbol: -
Assembly: GCA_035047325.1
Location: JAWNPU010000066.1:3260182-3262114[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.015 1.3 9.8 0.2 1 18 33 50 33 50 0.91

2 11 0.84 73 4.3 2.1 1 20 116 135 116 136 0.92

3 11 0.00038 0.033 14.8 1.5 2 23 179 200 178 200 0.97

4 11 0.0002 0.017 15.7 0.9 1 23 226 247 226 247 0.98

5 11 0.00054 0.047 14.3 1.1 2 23 255 276 254 276 0.97

6 11 0.00031 0.027 15.1 0.3 1 23 305 327 305 327 0.98

7 11 4.6e-08 4e-06 27.1 1.0 1 23 333 355 333 355 0.99

8 11 0.00096 0.083 13.5 5.5 1 23 361 383 361 383 0.98

9 11 9.8e-06 0.00085 19.8 1.5 1 23 389 411 389 411 0.97

10 11 0.0019 0.16 12.6 1.6 1 23 415 437 415 437 0.99

11 11 0.029 2.5 8.9 0.1 3 23 460 481 460 481 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.015	1.3	9.8	0.2	1	18	33	50	33	50	0.91
2	11	0.84	73	4.3	2.1	1	20	116	135	116	136	0.92
3	11	0.00038	0.033	14.8	1.5	2	23	179	200	178	200	0.97
4	11	0.0002	0.017	15.7	0.9	1	23	226	247	226	247	0.98
5	11	0.00054	0.047	14.3	1.1	2	23	255	276	254	276	0.97
6	11	0.00031	0.027	15.1	0.3	1	23	305	327	305	327	0.98
7	11	4.6e-08	4e-06	27.1	1.0	1	23	333	355	333	355	0.99
8	11	0.00096	0.083	13.5	5.5	1	23	361	383	361	383	0.98
9	11	9.8e-06	0.00085	19.8	1.5	1	23	389	411	389	411	0.97
10	11	0.0019	0.16	12.6	1.6	1	23	415	437	415	437	0.99
11	11	0.029	2.5	8.9	0.1	3	23	460	481	460	481	0.94

Sequence Information

Coding Sequence: ATGTCATCGACGTACGGGAGTGAGGATGCAGCGATGAGTCCATCCATGCACGTGGAGCAGGTAATCCCCACGGATTGCATCTCCCAGGAAATGTTTTTCTACTGCGAGCTCTGCGGTAAAGTCTACGAGGACAGCGAGGCCTTCAACAGGGACCACACTCAGCAGTCAAGCTGCTGCGCTGTCGTCAAGGAGGAGGTGCATTTCATAGAGGAACCGACAGTGGAAGAAGGCACATCCGAGGAAATATTGGAAGCGGATGTGCCTCTTTGGGAAGTGGTGGATGCGCCTGTAACTACCGCAATAACGGAGCAAGACGAGCTCGTCGATCCCAGCCAGTCGGAGCGCTACTTCTGCTACGACTGCCAtagcatttttgaaaataggAGCAGTGCCGAGGATCATGTGTGCCCGCGTGCAGAGGTGGGAAATTCGCCAGGCCCAGAGACAACTGTCGCCAGCGCTCCCAAGCAAACCATCCGCCGAAAGGTATCCCCACCCAGCGGCAAATCAAACGCCAAGGGAACGACTTCCATCACCTGCGATATTTGCAACACGAACTTCAGCTCGTCAAAGTTTCTCAAATTCCACATGCGTATCCATGAGAAGCGCGGATCTAAGAGTATTCAAGATGCTTTGCCCGTAGGCGCACACCAAGCATACAGCAAGCTGGATCAGTTCTATTGCGAAATCTGCAACAAGAGCTTCGACGAAAACCTACTGACGGTACACAAGCAGATGCACCAGAAGACGGTCAATGAGATCAGTTGCAAAACCTGTAACCGCAAGTTTGAAGATTCCATCACCTACCAGATGCACTTGAAGATTCACGAGAAACCCCGTGCCGTGGATGCTACCAAAAAAACTGCTGCACGCCCTAATGGTAGCACCAGCAGCAGTGAGAAGGAACGAGGCTTCCCTTGCCAGTTCTGTGAGAGAGTCTTCGCCCGTCCCTATGAGAAAGTCAAGCACGAGCGGGTGCACACTGGAGAGAAACCCTACACCTGCGAGGTGTGTGGCAAGACTTTCCGCGTCTCCTACTCGCTCACTCTGCACCTGCGAACTCACACCGATATTCGTCCATATGTCTGCACAGTTTGCAACAAGCGCTTCAAGTCGCACCAAGTATACTCGCATCACCTGCGCATCCATAGCTCAGAGCGCGAGTTCGCCTGCGACGTGTGCTCGAAGACCTTTCGTACCTCTGTGCAGCTTTACTCGCACAAAAATACCCATACCAAGCCCTACCAATGCGCTGTATGCAACCGACCCTTCTCTTCAATGTATGCCGTCAAATGCCATATGCAAACCCACCAAGAGGAGAAGAGCACTGCGTCTTCCGGCGCTAAGGGTGGGTCCTCGACGTGGGGAAAGTTTTGGTGCAGGGCCTGCGGAGCTGAATACGCGCGTCTCTTTGCCCTGCGCCTGCACATGAAGTCGGCCCACGGCCTGACAGAGGATGCCGATCCGAAGCAGGAGGCAGTACCTGACGCTGAAGAGGAGGCGCACATTGGCGAGTCTGAGGACTCGGAGACGGCGGTACTGATAGCAGCCGCCGAGGCAGATGCCGCGTATTTAAGTGCTGTGGTAAACGGTGTCGACGTAGCTGGTTCCGTTCCCACCTACGAGGAGGGTGTCGAGTTTGATGTTGACAACTTCCATAGTGAGGAAATCATTACGGATTGGCTCAAGTAG
Protein Sequence: MSSTYGSEDAAMSPSMHVEQVIPTDCISQEMFFYCELCGKVYEDSEAFNRDHTQQSSCCAVVKEEVHFIEEPTVEEGTSEEILEADVPLWEVVDAPVTTAITEQDELVDPSQSERYFCYDCHSIFENRSSAEDHVCPRAEVGNSPGPETTVASAPKQTIRRKVSPPSGKSNAKGTTSITCDICNTNFSSSKFLKFHMRIHEKRGSKSIQDALPVGAHQAYSKLDQFYCEICNKSFDENLLTVHKQMHQKTVNEISCKTCNRKFEDSITYQMHLKIHEKPRAVDATKKTAARPNGSTSSSEKERGFPCQFCERVFARPYEKVKHERVHTGEKPYTCEVCGKTFRVSYSLTLHLRTHTDIRPYVCTVCNKRFKSHQVYSHHLRIHSSEREFACDVCSKTFRTSVQLYSHKNTHTKPYQCAVCNRPFSSMYAVKCHMQTHQEEKSTASSGAKGGSSTWGKFWCRACGAEYARLFALRLHMKSAHGLTEDADPKQEAVPDAEEEAHIGESEDSETAVLIAAAEADAAYLSAVVNGVDVAGSVPTYEEGVEFDVDNFHSEEIITDWLK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00615688;
90% Identity: iTF_00504138;
80% Identity: -