Basic Information

Insect: Drosophila vallismaia
Gene Symbol: -
Assembly: GCA_035047325.1
Location: JAWNPU010000055.1:12228870-12231363[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 1.4 1.2e+02 3.6 4.5 1 23 278 300 278 300 0.92

2 11 4.6e-07 4e-05 24.0 0.4 1 23 306 328 306 328 0.99

3 11 1.8e-05 0.0016 19.0 4.5 1 23 334 357 334 357 0.97

4 11 0.12 11 6.9 3.8 1 20 363 382 363 385 0.95

5 11 0.0075 0.65 10.7 1.7 1 23 391 413 391 413 0.97

6 11 8.3e-05 0.0072 16.9 1.8 1 23 419 441 419 441 0.98

7 11 0.00013 0.011 16.3 3.4 1 23 449 472 449 472 0.97

8 11 0.015 1.3 9.8 0.7 2 23 479 500 478 500 0.97

9 11 0.00036 0.031 14.9 0.7 1 23 506 528 506 528 0.98

10 11 1.7e-05 0.0015 19.0 0.4 1 23 534 557 534 557 0.95

11 11 3.6e-06 0.00031 21.2 4.1 1 23 571 593 571 593 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	1.4	1.2e+02	3.6	4.5	1	23	278	300	278	300	0.92
2	11	4.6e-07	4e-05	24.0	0.4	1	23	306	328	306	328	0.99
3	11	1.8e-05	0.0016	19.0	4.5	1	23	334	357	334	357	0.97
4	11	0.12	11	6.9	3.8	1	20	363	382	363	385	0.95
5	11	0.0075	0.65	10.7	1.7	1	23	391	413	391	413	0.97
6	11	8.3e-05	0.0072	16.9	1.8	1	23	419	441	419	441	0.98
7	11	0.00013	0.011	16.3	3.4	1	23	449	472	449	472	0.97
8	11	0.015	1.3	9.8	0.7	2	23	479	500	478	500	0.97
9	11	0.00036	0.031	14.9	0.7	1	23	506	528	506	528	0.98
10	11	1.7e-05	0.0015	19.0	0.4	1	23	534	557	534	557	0.95
11	11	3.6e-06	0.00031	21.2	4.1	1	23	571	593	571	593	0.97

Sequence Information

Coding Sequence: ATGCCTCGAAAGGCGCGCAAAGTTGTGGCTGAGACCGAGGATCTCCAGTCCTTCCTCAACAGCATTCCCAAGGTCGGGGACAGCAACGATGAAAAAGTGATGAACAAAATAATGGAGGccatcgaggaggaggacgcAGTACAGCATTTGATCGAAGAAGTCcaggaggaggaagaggaacaggaacaggaacaggaagaagaggaagaggaggagtTCGATGAGGACAAATACTTCATAGACGATGAGGGCAACTGTTACATCAAGACGACGCCAAAGATCCAGAGCGAAGTCCAAAAGAAACTCAAGGAGGCGGCCAACAAAAAGGCCAAGCAAAAGCAGACAACAAAATCGAATAGTAAAGCAATCAATCTGCGTCCCGCCACTTCGCCAACAAAAAGTTCCACTAGCAAGTCCTTGCCAATTAGTGTTCGGCCAGCCCGGTCGGCGACCAAATCTTCCGCAGCACATGGCAAGCAGGAGGAGGATCCACGACCCGCTGCAGAATCCAACCGtgtaacaacgagacgcagagcTCAACTTAACTCTAAGGCAGCCAAAGAAACCAATGACTTGGAGAGGGAGCTCGAAGAGCTGGTCGATGATCCCGACATCAATGGCGTTGTTAGCAACCTGGAGGACTATGCGGTGGAGACTTCTGTTGTGGATGCCCTAGAGAAGCTTAACCAAGACGAGGTATACGAGTTCGACGACCCAGGTGCGGAGCCTGTGGTGGAAGAAACCGACGCGAAGCAAGATTTTCTAATCACGGGCGAGCAAGTGACTCTAAAACCAGCCACAGCGCAAACGAAGAGCGACAGTGGAGCCACGTACACCTGCTCCAAGTGTCCATACACATCAAACAAAAGGTTCCTGATCACTCGCCACTGCCGAGGTCACGATGAGGAACCCTCCTTCAGGTGCTCCATCTGTGAACGAGCGTTCCGCACCAAGGCTGGCCTTGTGAACCACATGAACACACACAATGGCGTCAAACCGCACAAATGCAAGTTCTGCGAAAGGTCATTCACGACGAGTGGCGAGCTGATACGGCACACTCGATACAAACACACCAAAGAGAAGCCGCACAAGTGCACCGAGTGCAACTACGCCAGCGTGGAGCTGACCAAGCTGCGCCGCCACATGACCTGTCATACGGGCGAGCGACCCTACCAATGCCCGCACTGCACCTACGCCTCCCAGGACATGTTCAAGTTGAAGCGCCATTTGGTGGTTCACACGGGCGAAAGGAAGTACCAGTGCGACATCTGCAAGTCGCGTTTCACGCAATCCAACTCCTTGAAGTCGCACAAACTCATACACACCGTGGTGGACAAGCCCTCCTACCAGTGTACTTACTGCCCTACGACGTGTGGCCGCAAGGCAGACCTTCGCATCCACATCAAGCACATGCACACGGCTGGCAAGCCGCTTAAATGTCGGCGCTGTGGTCAGGAGCTGCCCGATCGCTACCAGTACAAGCTGCACGTCAAGTCGCACGAGGGCGAGAAGTGCTACCGCTGCGAGCTATGTCCATACGCCTCGGTGACCAAGCGTCACCTGGACTCGCACATGCTCATCCATCTGGATGAGAAACCGTTCCCGTGCGATCTCTGCCCGCAGACCTTCCGTCAGCGGCAGTTGCTGCGGCGTCACGTCAATCTCATACACAATGATAACTACGAGCCACCGCAGCCGCGGGAGAAACTACACAAGTGTCCGAGTTGCACTCGCACTTTCACCCACAAAGGAAATCTCATCCGGCACATGGAGCTCCACGACGACTCGGTCAATGCGCGCGAGCAAAGAAAGCGCCTCAAAATGGGCCGAGACCTGCGTATCCGTCCGGACGGAAAACTAATAAATCTGAAAGATGAAAATTCACAAATTGACGATCAGGAGGAGGAGTGCTACGACCTGGCAGAGATCGAACCAGACGACCTGGACGAATCCCAGTCAGAGACAGAGACCAAAAAACCAGCGTCCACAGCGCTGAGGTCAGAGCCAGTGATCATCAACAAACATGTCAGGAAATATGGCTCTAACAAGAATCCCGTCATTATTAACAAGCGGCTGCGGCCGCAGAACAACACTAATACGTTCCACATCAAGGAGGAAAAGGATAATGCGGACTTCACGGTCCAACTGCAAGCCGACGACGGGCAGATGATGGTGGTGGAGTTAATCAATGGCGCCGAGGAGGTGGTGGTCAAGAGGGAACCCAGTGGAACCACAAATATAAGTGCTTCCAACTGCTTTGGCTTTGAGGAGGATGAAGACTACGAGGAATACATAGAACAGGATAACGATGTAGAGGCCGAGTCGCAAGAGTTCCTGCAGCTCATGGACATGATAGAACAGGATGCTTAG
Protein Sequence: MPRKARKVVAETEDLQSFLNSIPKVGDSNDEKVMNKIMEAIEEEDAVQHLIEEVQEEEEEQEQEQEEEEEEEFDEDKYFIDDEGNCYIKTTPKIQSEVQKKLKEAANKKAKQKQTTKSNSKAINLRPATSPTKSSTSKSLPISVRPARSATKSSAAHGKQEEDPRPAAESNRVTTRRRAQLNSKAAKETNDLERELEELVDDPDINGVVSNLEDYAVETSVVDALEKLNQDEVYEFDDPGAEPVVEETDAKQDFLITGEQVTLKPATAQTKSDSGATYTCSKCPYTSNKRFLITRHCRGHDEEPSFRCSICERAFRTKAGLVNHMNTHNGVKPHKCKFCERSFTTSGELIRHTRYKHTKEKPHKCTECNYASVELTKLRRHMTCHTGERPYQCPHCTYASQDMFKLKRHLVVHTGERKYQCDICKSRFTQSNSLKSHKLIHTVVDKPSYQCTYCPTTCGRKADLRIHIKHMHTAGKPLKCRRCGQELPDRYQYKLHVKSHEGEKCYRCELCPYASVTKRHLDSHMLIHLDEKPFPCDLCPQTFRQRQLLRRHVNLIHNDNYEPPQPREKLHKCPSCTRTFTHKGNLIRHMELHDDSVNAREQRKRLKMGRDLRIRPDGKLINLKDENSQIDDQEEECYDLAEIEPDDLDESQSETETKKPASTALRSEPVIINKHVRKYGSNKNPVIINKRLRPQNNTNTFHIKEEKDNADFTVQLQADDGQMMVVELINGAEEVVVKREPSGTTNISASNCFGFEEDEDYEEYIEQDNDVEAESQEFLQLMDMIEQDA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00550409;
90% Identity: iTF_00546119;
80% Identity: -