Basic Information

Gene Symbol
ct
Assembly
GCA_035047325.1
Location
JAWNPU010000025.1:360670-390345[+]

Transcription Factor Domain

TF Family
CUT
Domain
Homeobox|CUT
PFAM
PF02376
TF Group
Helix-turn-helix
Description
The CUT domain is a DNA-binding motif which can bind independently or in cooperation with the homeodomain, often found downstream of the CUT domain. Multiple copies of the CUT domain can exist in one protein (eg Swiss:P10180).
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 3 3.3e-27 6.6e-23 80.7 0.0 3 72 1022 1092 1020 1097 0.95
2 3 3.2e-32 6.5e-28 96.7 0.0 3 77 1470 1545 1468 1547 0.96
3 3 2e-31 4e-27 94.2 0.0 3 76 1761 1835 1759 1838 0.96

Sequence Information

Coding Sequence
ATGTGCCTGACAAGGCCTGGTCCTGGGGATTGGATTACTGAGGAGCGCGCTACTTTGGCCGAGAAGGAAGTGAACACCCTGAAGGAGCAGCTATCCACCGGAACCAGCGACACCGTCACAGGCAACAGCATCGACAACAGCGacacagcagcaggagcaggagcgaCCGCAACAGGAGCCAGTGCAACAGGAGCGACTGCAACAGTTAAGAGCGAGGAGGAGCAGGTGAACCAGGAGAACCAGGTGGTCAGTACCGCAGGCATCTTGGAGAGCCTGGAGCACATCacgctgcagcagcagcagcagcagcaacagcatctcAACGGCGGCAGCCTGCTGGCGAACGCGGCGGCCAGCGCCAACACGCCGTCGCCCTCGCCGCCGTTGCTCACCgccgagcagcagcagcagttgcagaGCAGCCTGCAGCAGGGCGGCGGCTGCCTCAACCCGAAGCTCTTCTTCAGCCACGCCCAGCAGATGATGATGgaggcggcagcggcggcggcggcagcagcagcggccttgcaacagcagcagcaggaggtCGATGTGGCTGCCGATCAGGCGGTAGCGGTAGCCTCCGATGGGGCAGCAGCCACCAGCAATGCCGTTGGCAACACAGCAGCGGCCCACAGccacgaggacgaggacgaggacgaggaagACGATGCCGATGAGGCACAGGacgaggaagaggacgaagacgatgaggaggaggaggaggaggaggaggacaacGCCTCGATGCAATCAAACGCCGACGACATGGAGCTGGATGCAGCACTGCAAGAAACCGGGGCCGAGTCCGGCGCCTCAAGAACTGAGTCAAGTGCAGCGCAGCAGCAACATAGCGAAGGGCGTTTGGCGGAGGTCAAGGAGGTCAAAGAGGTCAAGGAGGAGCCGGAGGCTAGTTTAAATGTTAGCAATAATCACACAACCGATAGCAATAATAGTTGTAGTCGAAagagtggcagtggcagtggcagtagaAACACGTGCAACATCAGCGAGGGGCAGGAGGAGCCGCATGTGGCAAATAGcgccgaggacgaggacgattgcgccaacaacaacaacaccaataccaccagcaacaacaacaacaacaacaacagtaccagcaacaccaacaacagcaacaccaacaacaacaacaataataacaataacaacaataacaacaataacaataataacaacaacaacagcagcagcggcaacagcGAGAAGCGCAAGaagaagaacaacaacaacaacaacggacAGCCCGCTGTCCTTTTAGCCGCCAAAGACAAAGAGATCAAGGCCCTGCTGGACGAACTGCAGCGCCTGAGGGCTCTGGAGCAGACCCACCTCGTCCAGATCCAGCGACTGGAGGGACACCTGGAGGTCAAGCGGCAGCACATCATCCGGCTGGAGGCTCGCCTGGACAAGCAGCAGATTAACGAGGCCCTCGCCGAGGCCACGGCCTTGGCAGCtgccaccaacaacaacaacaacaacaataacaacagcaTTAGCCAGAGCAGCgagaacaacaacaagctgCCCCTGGGCGCCGCGGAGTCCGACCTTGCCGAGGCCGAGCACGagaccaccaccaccaccgccaccgccgccgcctccgtcatcgaggacgaggaggaggacgaccaggaccaggaccaggccaTGCTGGTGGACGGGGAGAAGCACGAAGGCCACGACGAcaaggaggagaaggaggaggaggagctggaggaggcCGAGAACCGGGAAGATCGTTCCACAGCCGGCACAGCCTCCAACGAAGGCAACGAGCTCAAAATCAAAAAGGAACAGCACAGTCCGCTGGATCTCAATGTGCTCAGTCCTCAGGCAACGATCGCCGCTGCAGCCGcggccgccgctgccgccgcctgCGCCAACGACCCCAACAAATTCCAGGCCCTGCTCATGGAGCGGACCAAGGCTCTGGCCGCGGAGGCGCTGAAGAACGGCACCGGAGACGCCGCCAACACCGAAGAAACGCTGGGCAGTGAAACGTTAACCGAAACGaaaccggaaacggaaacgggaACGGAAACGCTGGCCAAGCAGGAAGCAGCCGACGACCAGGAGCCGACGACGACCATTGCGGTCAATAGTTATTGGCGTCGCGGCTTCGAGGCGGACAAGTCCGGGAGCAAAACGCCGACAGTTTATCAAAGCTTGGCGGCGATCGATCCGGGCCGGTTgctgccaccgccgcctccGCCCCCACCGCCGCCTTCCCTGCCCCCCAGTCAGCACTTTGGCAACCCGACTGCCACGCCTCTATACCCTCAACAATCGCCACAACAGccacaagaacaacaacaacagcaacagcaacagcaacagcaacatggACCTTCGTCCACCGCCTTGCTAAGTCAACTAGTTAACGCAACATTTTCCAACTCCACCCCCTCTTCTTCCTCCGCCCGCCTAGATGGAAGCCactcccagcagcagcagcagcagcagtccctgcagcagcagcaacagtcccagcaccaccacccgcagcagcaccacccgAACGCCAGCCAAGCCAATCCCACGGacaaccaccaccaccacctacACATGCTGCACCCGGCGGCGGCGCACcacctgcagcagcagcagcagcagcaggcgcagcaccaccaccaccaccaccaccaggaCGGCAACTCCAATTCGAGCGCCACCAGCACCAACGCCGGAGGAGGCAACCTCAACGGGTCGAAGCTGCTGCAGGACCCCGAcacagccgccgccgccgccacagCTACCGCCAACGGACTGGCAGCCGCCGCCATGGCGGCCCACGCCCAGCACGCCCTCGGTCCGGCCGGATTCCTGCCTGGCCTGTCGCCGGCCTTCCAGTTCGCAGCCGCCGCGGCAGTGGGCCAGGATGCCCGCGCCCACTATCGCTTCGCCGACGCCGAGCTGCAGCTGCCTCCGGGCGCCTCGATGGCCGGCCGGCTGGGCGAGTCCCTCATCCCCAAGGGCGACCCCATGGAGGCCAAGCTGCAGGAGATGCTGCGCTACAACATGGACAAGTACGCCAACCAGGCCCTCGACACCCTTCACATCTCGCGCCGCGTCCGCGAGCTCCTTTCCGTGCACAACATCGGCCAGCGGCTGTTCGCCAAGTACATCCTGGGCCTCTCCCAGGGCACCGTCTCGGAGCTGCTGAGCAAGCCGAAGCCCTGGGACAAGCTGACCGAGAAGGGGCGCGACAGCTACCGGAAGATGCACGCCTGGGCCTGCGACGACAACGCGGTGATGCTGCTCAAGTCGCTGATACCGAAGAAAGACTCAGGCCTGCCCCAGTACGCCGGCCGAGGCCCCGGCGGCGGAGGCGACGACTCCATGTCGGAGGACCGGATCGCCCACATCCTCAGCGAGGCCTCCTCTCTGATGAAGCAGTCGAGCGCCGCCCAACAGCAGCGGGACCATGGCCGCGAGGACTCCCACAGCAACGAGGACAGCAAGTCGCCGCTCCAGAGCTGCACCTCTCCCTTCTTCAAGGTGGAGCAGCAGCTGAAGCAGCAGCACCTCACTCCCGACCAGGCCCAGCAGCAGCGCGAACGCGAGCGAGAGCGGGAGAGGGAGCGCGAgcgggagcagcagcagcgcctgCGACACGAGGATCTCGCACAGGACAAGATGGCCCGGCTCTACCAGGAGCTCATTGCCCGCACGCCCCGTGAGACGGGTTTCCCCAGCTTCCTGCTGTCGCCCTTCTTCGGAGGAGCAGCCGCCATGCCAGGAGCAGCCGCCAACGCCTTTCCCGCCGCCATGGCCGCCGACGAGAACATGAGGCACGCCTTCGAGCGGGAGATCGCCAAGCTGCAgcaggcgcagcagcagcaagtccagcagcagcagcagcagcagttccCCAATTTCTCCAGTCTGATGgctctgcagcagcaggtccTCAACGGAGCCCAGGACCTCTCCTTGACCGCCAAGGACATCAAGTTGAACGGCCAACGCTCTTCGCTGGAGCACAGTgccggcagcagcagctgctccaAGGACGGCGAGCGCGAGGACAGCTACGCTGCCTCTCTACACGGCCTGCAGTCGGAGGGACCCGGCACTCCGGCCCCACCCTCAGTGGGACAGCAACCTTTGGCGACCACAGGCGGACCAGGAGGCGCAGGAGCCTCTGGCAGCGCCGCTAGCAACTCGGCGGCCCCCAGCCCGCTCAGCAACTCCATTCTTCCGCCGGCCCTGAGCAGCCAGGGCGAGGAGTTCGCCGCCACGGCGAGCCCCCTCCAGAGGATGGCCTCGATCACCAACTCGCTGATCACCCAGCCCCCGGTGACGCCACACCACAGCACTCCCCAAAGACCGACCAAGGCGGTCCTGCCCCCGATCACCCAGCAGCAGTTCGACATGTTCAACAACCTCAACACGGAGGACATCGTGCGGCGCGTCAAGGAGGCCCTCTCGCAGTACTCGATATCGCAGCGGCTCTTCGGCGAGTCCGTGCTGGGCCTCTCGCAGGGATCCGTCTCGGACCTGCTGGCCCGGCCCAAGCCCTGGCACATGCTCACCCAGAAGGGACGCGAACCCTTCATCCGCATGAAGATGTTCCTGGAGGACGAGAACGCGGTACACAAGCTGGTGGCCAGCCAGTACAAGATCGCCCCCGAGAAGCTGATGCGCACCGGCAGCTACAGCGGCAGCCCCCAGATGCCGCAGGGCTTCGCCTCCAAGATGCAGGCCGCCTCCCTGCCCATGCAGAAGATGATGAAcgagctgaagctgaagccgGAAGGCCAGCAGCACCTCATGCAGCAGATGCAGGCGGCGGCCATGTCCGCGGCCATGCAGCAACAGGCGGtggcccagcagcagcaggtggcgGTCGCAGCGGCggcccagcagcaacagcagcagcagctccagcaccagcacctccagcagcagcacctgcagcagcaggcggcGGTGGCAGCGGCTGCCGTGGCGGGTCAGCACCCTCACCACACGGCGGCGGCGGCCCTGCACCACCAGAGCATGCTCCTGACCTCGCCGGGACTGCCACCCCAGCACGCCATCAGCCTACCGCCGGGAGGAGGCAATGCCAGTGGCGCCGGAGCCGGCTCTGGAGTGGCTCCTGGAAcaccaaacaacaacaacgccaGTCCCGCCGGCGTCGGCAACAGCTCCGAGAAGAAGCCCATGCTGATGCCCGTCCATGGTGGGAACGCCATGCGAAGCCTCCACCAGCACATGTCGCCCACCGTCTACGAAATGGCCGCCCTCACCCAGGACCTGGACACCCACGACATCACCACCAAGATCAAGGAGGCCCTTCTGGCCAACAACATTGGCCAGAAGATATTCGGCGAGGCGGTCCTGGGCCTGTCCCAGGGCTCCGTCTCCGAGCTGCTGAGCAAGCCCAAGCCCTGGCACATGCTCTCCATCAAGGGCCGCGAGCCCTTCATCCGGATGCAGCTCTGGCTGAGCGACGCCAACAACGTGGAGCGGCTGCAGCTGCTCAAGAACGAGCGGCGCGAGGCCTCCAAGCGGCGAAGGAGCACCGGTCCCAACCAGCAGGACAACAGCAGCGACACTTCCAGCAACGATACAAACGACTTCTACACCAGCAGTCCGGGCCCCGGCTCCGTGGGAAGCGGAGTCGGCGGTGCCCCGCCCAGCAAGAAGCAAAGGGTCCTCTTCTCTGAGGAGCAGAAGGAGGCTCTGCGCCTGGCCTTCGCCCTGGACCCCTACCCCAACGTGGGCACCATCGAGTTCCTGGCGAACGAGCTCGGCCTGGCCACCAGGACCATCACCAACTGGTTCCACAACCACCGCATGCGCTTGAAGCAGCAGGTGCCGCACGGCCAGCCCGGCCAGGACAACCCCATTCCGAGCCGGGAGAGCACCAGTGCCACGCCCTTCGATCCCGTCCAGTTCCGCATCCTGCTTCAGCAACGTCTCGTCGAGCTGCACAAGGAGCGCATGGGCCTGAGCGGCGCACCGATCCCGTATCCGCCGTACTTTGCCGCCGCCGCCCTGCTGGGCCGCAGCCTGGGAATTCCCGGAGCGGCGGCAGCTGCAGGAGCAGCGGCTGCAGCGGCAGCAGTGGGCGCAGCCGGCTCTGCCGGAGCCGACGAACTCACGGCCCTGAACCAGGCCTTCAAGGAGCAGATGAGGGGCCTGGACCTCTCCATGCCCACTCTGAAGCGCGAGCGTAGCGCCGACTACCAGGACGACATGGAGCACAACCTGAGCGACAACGAGAGCCTGGAGGGCTCTGGTGGCCAGGACGGAGACCTGGACAAGACCGGAGGAAGCACCGACTACGAGAAGGTCCTCCACAAGTCCCTGGCCtctgccgccgctgccgccgcctaCATGTCGAATGCGGTACGAAGCTCCCGCCGCAAGCCGGCGGCCCCCCAATGGGTGAATCCCGCCGGTGCCGGAGGTCCCACCACCAATCCCGTCGTGGCAGCCGCCGtggcagcagccgcagcagcagcagcggccgCCGAGGGTGAGCGCATTATCAACGGCGTGTGTGTGATGCAGCCCTCGGAGTACGGAGTCCGCGGCGAGGACAACGACGGCAAGGGTGGCGAGGAGTCCTCCTTAGGAGGCGGTGACAACGAGCTGGAGATCGACCAGAGCTTCATGGAGCCGGAGGTGAGCATCAagcaggaggaggacgacgacgaggaggaggaccaCTCCCAGGCGCACCCCCTCCTGGAGAGCTCCGTGGACGAGGCTGCCGAGCAAAAGCTGAAGGTGATCAACGAGGAGAAGCTGCGCCTGGTGCGGGTGCGTCGCCTGAGCAACGCGGAGGAGTCCGCCGGTGTGGGAGACTCCGTTAGCGGCGCCAGCACCAACCAGGCCTCCTGCTCGCCCTCggccggaaacggaaatggaacCGGAGTcggaaccggaaccggaaccggaGCCGGAGCTGCCTGGAACTACTAG
Protein Sequence
MCLTRPGPGDWITEERATLAEKEVNTLKEQLSTGTSDTVTGNSIDNSDTAAGAGATATGASATGATATVKSEEEQVNQENQVVSTAGILESLEHITLQQQQQQQQHLNGGSLLANAAASANTPSPSPPLLTAEQQQQLQSSLQQGGGCLNPKLFFSHAQQMMMEAAAAAAAAAAALQQQQQEVDVAADQAVAVASDGAAATSNAVGNTAAAHSHEDEDEDEEDDADEAQDEEEDEDDEEEEEEEEDNASMQSNADDMELDAALQETGAESGASRTESSAAQQQHSEGRLAEVKEVKEVKEEPEASLNVSNNHTTDSNNSCSRKSGSGSGSRNTCNISEGQEEPHVANSAEDEDDCANNNNTNTTSNNNNNNNSTSNTNNSNTNNNNNNNNNNNNNNNNNNNNNSSSGNSEKRKKKNNNNNNGQPAVLLAAKDKEIKALLDELQRLRALEQTHLVQIQRLEGHLEVKRQHIIRLEARLDKQQINEALAEATALAAATNNNNNNNNNSISQSSENNNKLPLGAAESDLAEAEHETTTTTATAAASVIEDEEEDDQDQDQAMLVDGEKHEGHDDKEEKEEEELEEAENREDRSTAGTASNEGNELKIKKEQHSPLDLNVLSPQATIAAAAAAAAAAACANDPNKFQALLMERTKALAAEALKNGTGDAANTEETLGSETLTETKPETETGTETLAKQEAADDQEPTTTIAVNSYWRRGFEADKSGSKTPTVYQSLAAIDPGRLLPPPPPPPPPPSLPPSQHFGNPTATPLYPQQSPQQPQEQQQQQQQQQQQHGPSSTALLSQLVNATFSNSTPSSSSARLDGSHSQQQQQQQSLQQQQQSQHHHPQQHHPNASQANPTDNHHHHLHMLHPAAAHHLQQQQQQQAQHHHHHHHQDGNSNSSATSTNAGGGNLNGSKLLQDPDTAAAAATATANGLAAAAMAAHAQHALGPAGFLPGLSPAFQFAAAAAVGQDARAHYRFADAELQLPPGASMAGRLGESLIPKGDPMEAKLQEMLRYNMDKYANQALDTLHISRRVRELLSVHNIGQRLFAKYILGLSQGTVSELLSKPKPWDKLTEKGRDSYRKMHAWACDDNAVMLLKSLIPKKDSGLPQYAGRGPGGGGDDSMSEDRIAHILSEASSLMKQSSAAQQQRDHGREDSHSNEDSKSPLQSCTSPFFKVEQQLKQQHLTPDQAQQQREREREREREREREQQQRLRHEDLAQDKMARLYQELIARTPRETGFPSFLLSPFFGGAAAMPGAAANAFPAAMAADENMRHAFEREIAKLQQAQQQQVQQQQQQQFPNFSSLMALQQQVLNGAQDLSLTAKDIKLNGQRSSLEHSAGSSSCSKDGEREDSYAASLHGLQSEGPGTPAPPSVGQQPLATTGGPGGAGASGSAASNSAAPSPLSNSILPPALSSQGEEFAATASPLQRMASITNSLITQPPVTPHHSTPQRPTKAVLPPITQQQFDMFNNLNTEDIVRRVKEALSQYSISQRLFGESVLGLSQGSVSDLLARPKPWHMLTQKGREPFIRMKMFLEDENAVHKLVASQYKIAPEKLMRTGSYSGSPQMPQGFASKMQAASLPMQKMMNELKLKPEGQQHLMQQMQAAAMSAAMQQQAVAQQQQVAVAAAAQQQQQQQLQHQHLQQQHLQQQAAVAAAAVAGQHPHHTAAAALHHQSMLLTSPGLPPQHAISLPPGGGNASGAGAGSGVAPGTPNNNNASPAGVGNSSEKKPMLMPVHGGNAMRSLHQHMSPTVYEMAALTQDLDTHDITTKIKEALLANNIGQKIFGEAVLGLSQGSVSELLSKPKPWHMLSIKGREPFIRMQLWLSDANNVERLQLLKNERREASKRRRSTGPNQQDNSSDTSSNDTNDFYTSSPGPGSVGSGVGGAPPSKKQRVLFSEEQKEALRLAFALDPYPNVGTIEFLANELGLATRTITNWFHNHRMRLKQQVPHGQPGQDNPIPSRESTSATPFDPVQFRILLQQRLVELHKERMGLSGAPIPYPPYFAAAALLGRSLGIPGAAAAAGAAAAAAAVGAAGSAGADELTALNQAFKEQMRGLDLSMPTLKRERSADYQDDMEHNLSDNESLEGSGGQDGDLDKTGGSTDYEKVLHKSLASAAAAAAYMSNAVRSSRRKPAAPQWVNPAGAGGPTTNPVVAAAVAAAAAAAAAAEGERIINGVCVMQPSEYGVRGEDNDGKGGEESSLGGGDNELEIDQSFMEPEVSIKQEEDDDEEEDHSQAHPLLESSVDEAAEQKLKVINEEKLRLVRVRRLSNAEESAGVGDSVSGASTNQASCSPSAGNGNGTGVGTGTGTGAGAAWNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2