Basic Information

Gene Symbol
ct
Assembly
GCA_018150545.1
Location
JAECWL010000174.1:13257584-13293111[-]

Transcription Factor Domain

TF Family
CUT
Domain
Homeobox|CUT
PFAM
PF02376
TF Group
Helix-turn-helix
Description
The CUT domain is a DNA-binding motif which can bind independently or in cooperation with the homeodomain, often found downstream of the CUT domain. Multiple copies of the CUT domain can exist in one protein (eg Swiss:P10180).
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 3 5.7e-27 4.4e-23 80.9 0.0 3 72 754 824 752 829 0.95
2 3 5.6e-32 4.4e-28 96.9 0.0 3 77 1202 1277 1200 1279 0.96
3 3 3.5e-31 2.7e-27 94.4 0.0 3 76 1493 1567 1491 1570 0.96

Sequence Information

Coding Sequence
ATGGACAACGGTCGAAGCGGGAAGCGCGCCAACACGCCGTCGCCCTCGCCGCCGTTGCTCACCGCCGAGCAGCAGCAGCAGTTGCAGAGCAGCCTGCAGCAGGGCGGCGGCTGCCTCAACCCCAAGCTCTTCTTCAGCCACGCCCAGCAGATGATGATGGAGGCGGCAGCGGCGGCGGCGGCAGCAGCAGCGGCCCTGCAACAGCAACAGCAGGAGGTCGATGTGGCCGCCGATCAGGCGGTGGCGGTAACCTCCGATGGGGCAGCAGCCACCAGCAATGCCGTTGGCAACACAGCAGCGGCCCACGAAGAGGACGAGGATGAAGATGCCGAGGAGGCACAGGACGAGGTGGACGAGGACGAAGACGAAGAGGAGGAAGACGAGGAAGAGGAGGAGGACAACGCCTCGATGCAATCAAACGCCGACGACATGGAGCTGGATGCAGCACTGCAAGAAACCGGGGCCGAGTCCGGCGCCTCAAGAACTGAGCCAAGTGCAGCGCAGCAGCCACATAGCGAAGGGCGTTTGGCGGAGGTCAAGGAGATCAAGGCCCTGCTGGACGAACTGCAGCGCCTGAGGGCTCTGGAGCAGACCCACCTCGTCCAGATCCAGCGACTGGAGGGACACCTGGAGGTCAAGCGGCAGCACATCATCCGGCTGGAGGCTCGCCTGGACAAGCAGCAGATTAACGAGGCCCTCGCCGAGGCCACGGCCTTGGCAGCTGCCACCAACAACAATAACAACAACAGCATTAGCCAGAGCAGCGAGAACAACAACAAGCTGCCCCTTGGCGCCGAGGAGTCCGACCTGGCCGAGGCCGAGGCCGAACACGAGGCCACCACCGCCGCCGTCATTGAGGACGAGGAGGAGGAGGACCAGGACCAGGACCAGGCCATGCTGGTGGACCAGGAGAAGCACGACAGCCACGACGACAAAGAGGAGAAGGAGGAGGAAGAGCTGGAGGAGGCCGAGGAGCGGGAAGATCGTTCCACAGCCGGCACAGCCTCCAACGAAGGCAACGAGCTCAAAATCAAAAAGGAACAGCACAGTCCGCTGGATCTCAATGTGCTCAGTCCTCAGGCAACGATCGCCGCTGCAGCCGCGGCCGCCGCTGCCGCCGCCTGCGCCAACGACCCCAACAAATTCCAGGCCCTGCTCATGGAGCGGACCAAGGCCCTGGCCGCGGAGGCGCTGAAGAACGGCACCGGAGACGTCGCCAACACCGAAGAAACGCTGGGCAGTGAAACGTTAACCGAAACGAAACCGGAAACGGAAACGGAAAGGGAAACGCTGGCCAAGCAGGAAGCAGCCGACGACCAGGAGCCGACGACGACCATTGCGGTCAATAGTTATTGGCGTCGCGGCTTCGAGGCGGACAAGTCCGGGAGCAAAACGCCGACGGTTTATCAAAGCTTGGCGGCGATCGATCCGGGCCGGTTGCTGCCACCGCCGCCTCCGCCCCCACCGCCACCTTCCCTGCCCCCCAGTCAGCACTTTGGCAACCCGACTGCCACGCCTCTATACCCTCAACCACACCAGCAACCGCCACAACAAGAACAACAACAACAGCAGCAACATGGACCTTCGTCCACCGCCTTGCTAAGTCAACTAGTTAACGCAACATTTTCCAACTCCACCCCCTCTTCTTCCTCCGCCCGCCTAGATGGAAGCCACTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCGAACGCCAGCCAAGCCAATCCCACGGACAACCACCACCACCACCTACACATGCTGCACCCAGCGGCGGCGCACCACCTGCAGCAGCAGCAGGCGCAGCACCACCACCACCACCACCACCAGGACGGCAACTCCAATTCGAGCGCCACCAGCACCAACGCCGGAGGAGGCAACCTCAACGGGTCCAAGCTGCTGCAGGACCCCGACTCAGCCGCCGCCGCCGCCACAGCCACCGCCAACGGACTGGCAGCCGCCGCCATGGCGGCCCACGCCCAGCACGCCCTCGGTCCGGCAGGATTCCTGCCTGGCCTGTCGCCGGCCTTCCAGTTCGCAGCCGCCGCGGCAGTGGGCCAGGATGCCCGCGCCCACTACCGCTTCGCCGACGCCGAGCTGCAGCTGCCTCCGGGCGCCTCGATGGCCGGCCGGCTGGGCGAGTCCCTCATCCCCAAGGGCGACCCCATGGAGGCCAAGCTGCAGGAGATGCTGCGCTACAACATGGACAAGTACGCCAACCAGGCCTTGGATACCCTTCACATCTCGCGCCGCGTCCGCGAACTGCTCTCCGTGCACAACATCGGCCAGCGGCTGTTCGCCAAGTACATCCTGGGCCTCTCCCAGGGCACCGTCTCGGAGCTGCTGAGCAAGCCCAAGCCCTGGGACAAGCTGACCGAGAAGGGGCGCGACAGCTACCGGAAGATGCACGCCTGGGCCTGCGACGACAACGCGGTGATGCTGCTCAAGTCGCTGATACCGAAGAAAGACTCAGGCCTGCCCCAGTACGCCGGCCGAGGCCCCGGCGGCGGAGGCGACGACTCCATGTCCGAGGACCGGATCGCCCACATCCTCAGCGAGGCCTCCTCGCTGATGAAGCAGTCGAGCGCCGTCCAGCAGCAGCGGGACCATGGCCGCGAGGACTCCCACAGCAACGAGGACAGCAAGTCGCCGCTCCAGAGCTGCACCTCCCCCTTCTTCAAGGTGGAGCAGCAGCTGAAGCAGCAGCACCTCACTCCCGACCAGGCCCAGCAGCAGCGCGAACGCGAGCGGGAACGGGAGAGGGAGCGCGAGCGGGAGCAGCAGCAGCGCCTGCGACACGAGGATCTCGCCCAGGACAAGATGGCCAGGCTCTACCAGGAGCTCATTGCCCGCACACCCCGTGAGACGGGTTTCCCCAGCTTCCTGCTGTCGCCCTTCTTCGGAGGAGCAGCCGCCATGCCAGGAGCAGCCGCCAACGCCTTTCCCGCCGCCATGGCAGCCGACGAGAACATGAGGCACGCCTTCGAGCGGGAGATCGCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCAATTTCTCCAGTCTGATGGCTCTGCAGCAGCAGGTCCTCAACGGAGCCCAGGACCTCTCCTTGACCGCCAAGGACATCAAGTTGAACGGCCAGCGCTCCTCGCTGGAGCACAGTGCCGGCAGCAGCAGCTGCTCCAAGGATGGCGAGCGCGAGGACAGCTACGCCGCCTCTCTACACGGCCTGCAGTCCGAGGGACCCGGCACTCCGGCCCCACCCTCAGTTGGACAGCAGCCTTTGGCGGCCACAGGAGGACCAGGCGGCGCAGGAGCCTCTGGCAGCGCCGCTAGCAACTCGGCGGCCCCCAGCCCGCTCAGCAACTCCATTCTCCCGCCGGCCCTGAGCAGCCAGGGCGAGGAGTTCGCCGCCACGGCGAGCCCCCTCCAGAGGATGGCCTCGATCACCAACTCGCTGATCACCCAGCCCCCGGTGACGCCACACCACAGCACTCCCCAGAGACCGACCAAGGCGGTCCTGCCCCCGATCACCCAGCAGCAGTTCGACATGTTCAACAACCTCAACACCGAGGACATCGTGCGGCGCGTCAAGGAGGCCCTCTCCCAGTACTCGATATCGCAGCGGCTCTTCGGCGAGTCGGTGCTGGGCCTCTCGCAGGGATCCGTCTCGGACCTGCTGGCCCGGCCCAAGCCCTGGCACATGCTCACCCAGAAGGGCCGCGAACCCTTCATCCGCATGAAGATGTTCCTGGAGGACGAGAACGCGGTCCACAAGCTGGTGGCCAGCCAGTACAAGATCGCCCCCGAGAAGCTGATGCGCACCGGCAGCTACAGCGGCAGCCCCCAGATGCCGCAGGGCTTCGCCTCCAAGATGCAGGCCGCCTCCCTGCCCATGCAGAAGATGATGAACGAGCTGAAGCTGAAGCCAGAGGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTGCACCACCAGAGCATGCTCCTGACCTCGCCGGGACTGCCACCCCAGCACGCCATCAGCCTACCGCCGGGAGGAGGCAATGCCAGTGGCGCCGGAGCCGGCTCCGGAGTGGCTCCTGGAACACCGAACAACAACAATGCCAGTCCCGCCGGCGTCGGCAACAGCTCCGAGAAGAAGCCCATGCTGATGCCCGTCCATGGTGGGAACGCCATGCGAAGCCTCCACCAGCACATGTCGCCCACCGTCTACGAAATGGCCGCCCTCACCCAGGACCTGGACACCCACGACATCACCACCAAGATCAAGGAGGCCCTGCTGGCCAACAACATCGGCCAGAAGATATTCGGCGAGGCGGTCCTGGGTCTGTCCCAGGGCTCCGTCTCCGAGCTGCTGAGCAAGCCCAAGCCCTGGCACATGCTCTCCATCAAGGGCCGCGAGCCCTTCATCCGGATGCAGCTCTGGCTGAGCGACGCCAACAACGTGGAGCGGCTGCAGCTGCTCAAGAACGAGCGGCGCGAGGCCTCCAAGCGGCGGAGGAGCACCGGTCCCAACCAGCAGGACAACAGCAGCGACACTTCCAGCAACGACACGAACGACTTCTACACCAGCAGTCCGGGTCCCGGCTCCGTGGGAAGCGGAGTTGGCGGTGCCCCGCCCAGCAAGAAGCAAAGGGTCCTCTTCTCCGAGGAGCAGAAGGAGGCTCTGCGCCTGGCCTTCGCCCTGGACCCCTACCCCAACGTGGGCACCATCGAGTTCCTGGCGAACGAGCTCGGCCTGGCCACCAGGACCATCACCAACTGGTTCCACAACCACCGCATGCGCTTGAAGCAGCAGGTGCCGCACGGCCAGCCCGGCCAGGACAACCCCATTCCGAGCCGGGAAAGCACCAGTGCCACGCCCTTCGATCCCGTCCAGTTCCGCATCCTGCTTCAGCAGCGTCTCGTCGAGCTGCACAAGGAGCGCATGGGCCTGAGCGGCGCACCGATCCCGTATCCTCCGTACTTTGCCGCCGCCGCCCTGCTGGGCCGCAGCCTGGGAATTCCCGGAGCGGCGGCAGCTGCAGGAGCAGCGGCTGCAGCGGCAGCAGTGGGCGCAGCCGGCTCTGCCGGAGCCGACGAACTCTCGGCCCTGAACCAGGCCTTCAAGGAGCAGATGAGGGGCCTGGACCTCTCCATGCCCACTCTGAAGCGCGAGCGTAGCGCCGACTACCAGGACGACATGGAGCACAACCTGAGCGACAACGAGAGCCTGGAGGGCTCTGGTGGCCAGGACGGAGACCTGGACAAGACCGGAGGAAGCACCGACTACGAGAAGGTCCTCCACAAGTCCCTGGCCTCTGCCGCCGCTGCCGCCGCCTACATGTCGAATGCGGTACGAAGCTCCCGCCGCAAGCCGGCGGCCCCCCAGTGGGTGAATCCCGCCGGTGCCGGAGGTCCCGCCACCAATCCCGTCGTGGCAGCCGCCGTGGCAGCAGCCGCAGCAGCAGCAGCGGCCGCCGAGGGTGAGCGCATCATCAACGGCGTGTGTGTGATGCAGCCCTCGGAGTACGGAGTCCGCGGCGAGGACAACGACGGCAAGGGTGGCGAGGAGTCCTCCCTAGGAGGCGGTGACACCGAGCTGGAGATTGACCAGAGCTTCATGGAGCCGGAGGTGAGCATCAAGCAGGAGGAGGACGACGACGAGGAGGAGGACCACTCCCAGGCGCACCCCCTCCTGGAGAGCTCCGTGGACGAGGCTGCCGAGCAGAAGCTGAAGGTGATCAACGAGGAGAAGCTGCGCCTGGTGCGGGTGCGTCGCCTGAGCAACGCGGAGGAGTCCGCCGGCGTGGGAGACTCCGTCAGTGGCGCCAGCACCAACCAGGCCTCCTGCTCGCCCTCGGCCGGAAACGGAACCGGAGTCGGAACCGGAACCGGAGCCGGAGCTGCCTGGAACTACTAG
Protein Sequence
MDNGRSGKRANTPSPSPPLLTAEQQQQLQSSLQQGGGCLNPKLFFSHAQQMMMEAAAAAAAAAAALQQQQQEVDVAADQAVAVTSDGAAATSNAVGNTAAAHEEDEDEDAEEAQDEVDEDEDEEEEDEEEEEDNASMQSNADDMELDAALQETGAESGASRTEPSAAQQPHSEGRLAEVKEIKALLDELQRLRALEQTHLVQIQRLEGHLEVKRQHIIRLEARLDKQQINEALAEATALAAATNNNNNNSISQSSENNNKLPLGAEESDLAEAEAEHEATTAAVIEDEEEEDQDQDQAMLVDQEKHDSHDDKEEKEEEELEEAEEREDRSTAGTASNEGNELKIKKEQHSPLDLNVLSPQATIAAAAAAAAAAACANDPNKFQALLMERTKALAAEALKNGTGDVANTEETLGSETLTETKPETETERETLAKQEAADDQEPTTTIAVNSYWRRGFEADKSGSKTPTVYQSLAAIDPGRLLPPPPPPPPPPSLPPSQHFGNPTATPLYPQPHQQPPQQEQQQQQQHGPSSTALLSQLVNATFSNSTPSSSSARLDGSHSXXXXXXXXXXXXXXXXXXXXXXXPNASQANPTDNHHHHLHMLHPAAAHHLQQQQAQHHHHHHHQDGNSNSSATSTNAGGGNLNGSKLLQDPDSAAAAATATANGLAAAAMAAHAQHALGPAGFLPGLSPAFQFAAAAAVGQDARAHYRFADAELQLPPGASMAGRLGESLIPKGDPMEAKLQEMLRYNMDKYANQALDTLHISRRVRELLSVHNIGQRLFAKYILGLSQGTVSELLSKPKPWDKLTEKGRDSYRKMHAWACDDNAVMLLKSLIPKKDSGLPQYAGRGPGGGGDDSMSEDRIAHILSEASSLMKQSSAVQQQRDHGREDSHSNEDSKSPLQSCTSPFFKVEQQLKQQHLTPDQAQQQREREREREREREREQQQRLRHEDLAQDKMARLYQELIARTPRETGFPSFLLSPFFGGAAAMPGAAANAFPAAMAADENMRHAFEREIAXXXXXXXXXXXXXXXXXXPNFSSLMALQQQVLNGAQDLSLTAKDIKLNGQRSSLEHSAGSSSCSKDGEREDSYAASLHGLQSEGPGTPAPPSVGQQPLAATGGPGGAGASGSAASNSAAPSPLSNSILPPALSSQGEEFAATASPLQRMASITNSLITQPPVTPHHSTPQRPTKAVLPPITQQQFDMFNNLNTEDIVRRVKEALSQYSISQRLFGESVLGLSQGSVSDLLARPKPWHMLTQKGREPFIRMKMFLEDENAVHKLVASQYKIAPEKLMRTGSYSGSPQMPQGFASKMQAASLPMQKMMNELKLKPEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLHHQSMLLTSPGLPPQHAISLPPGGGNASGAGAGSGVAPGTPNNNNASPAGVGNSSEKKPMLMPVHGGNAMRSLHQHMSPTVYEMAALTQDLDTHDITTKIKEALLANNIGQKIFGEAVLGLSQGSVSELLSKPKPWHMLSIKGREPFIRMQLWLSDANNVERLQLLKNERREASKRRRSTGPNQQDNSSDTSSNDTNDFYTSSPGPGSVGSGVGGAPPSKKQRVLFSEEQKEALRLAFALDPYPNVGTIEFLANELGLATRTITNWFHNHRMRLKQQVPHGQPGQDNPIPSRESTSATPFDPVQFRILLQQRLVELHKERMGLSGAPIPYPPYFAAAALLGRSLGIPGAAAAAGAAAAAAAVGAAGSAGADELSALNQAFKEQMRGLDLSMPTLKRERSADYQDDMEHNLSDNESLEGSGGQDGDLDKTGGSTDYEKVLHKSLASAAAAAAYMSNAVRSSRRKPAAPQWVNPAGAGGPATNPVVAAAVAAAAAAAAAAEGERIINGVCVMQPSEYGVRGEDNDGKGGEESSLGGGDTELEIDQSFMEPEVSIKQEEDDDEEEDHSQAHPLLESSVDEAAEQKLKVINEEKLRLVRVRRLSNAEESAGVGDSVSGASTNQASCSPSAGNGTGVGTGTGAGAAWNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00614701;
90% Identity
iTF_00503890;
80% Identity
iTF_00503890;