Dtsa013151.1
Basic Information
- Insect
- Drosophila tsacasi
- Gene Symbol
- -
- Assembly
- GCA_018904565.1
- Location
- JAEIHY010016410.1:34448-35414[+]
Transcription Factor Domain
- TF Family
- zf-LITAF-like
- Domain
- zf-LITAF-like domain
- PFAM
- PF10601
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family display a conserved zinc ribbon structure [3] with the motif C-XX-C- separated from the more C-terminal HX-C(P)X-C-X4-G-R motif by a variable region of usually 25-30 (hydrophobic) residues. Although it belongs to one of the zinc finger's fold groups (zinc ribbon), this particular domain was first identified in LPS-induced tumour necrosis alpha factor (LITAF) which is produced in mammalian cells after being challenged with lipopolysaccharide (LPS)[2]. The hydrophobic region probably inserts into the membrane rather than traversing it. Such an insertion brings together the N- and C-terminal C-XX-C motifs to form a compact Zn2+-binding structure [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.15 2.3e+02 2.3 0.4 50 67 5 23 2 26 0.67 2 3 0.53 7.8e+02 0.6 2.3 2 21 120 139 119 146 0.75 3 3 2.5e-11 3.7e-08 33.7 15.2 5 70 156 220 152 220 0.93
Sequence Information
- Coding Sequence
- ATGTCCGTGTGCTCAGCCTCGAAAGATGTGGACTTCATGCGCTGCATGCAATGCCAGAAGGTGATCCGCATGTCCCGCTGCGATCCCACCTGTCTGCTGCGCCACGTCGAGCTGGAGCACCCGAGTAAATGCACTTTGATCAGCAGGAAGTGCGCGGGCAGCTGCGAAGCCAAGTCGGAGACATTCAGCGAGAAGATCAAGCGAATGCACATGCTGGCCGCAGAACATGGAATCAGCGAGGAACGCCTCTCGCAGATCAGCAAGAAGACGGGGCTTTCGGAGGAACAGATGGCCGAAAAGGCAGAGGCATACATGAAGAAAAGAGGATATTCCCCTTCCACAACCGTCTCTGGTAGTAGCCCACAAAAGGACGCCTGCCCGACTTGCAAGTGCTCGGATAAGGAGCAGGCTGAGCGCAAGCAGTGCTACAGGCTCTCCATCAGGCGCTGGGCGCCGGGGGATGGCTGCATCTACTGTCCATGCTGTTGCACCCAGGGCCGTCCGATGATTAAGGCCGCCTCAGAGATCGTGACCACCAAATGCTGTGCCGCCTGGATTGTGGTCTGCTGGCCGTTGTGCCTGCTGCCCTGCCTGGACTCCTCGGATAACAAGGAGTATCTATACTGCTCGAGCTGTAATGCCTTTCTGGGCATTTACAATCGTGAAAAACGTTGCATCAGGCCCAGCAAGGAGTTCGTGACCTGTTGCAGCGCTGCCACGCCACCGCCAAAATAG
- Protein Sequence
- MSVCSASKDVDFMRCMQCQKVIRMSRCDPTCLLRHVELEHPSKCTLISRKCAGSCEAKSETFSEKIKRMHMLAAEHGISEERLSQISKKTGLSEEQMAEKAEAYMKKRGYSPSTTVSGSSPQKDACPTCKCSDKEQAERKQCYRLSIRRWAPGDGCIYCPCCCTQGRPMIKAASEIVTTKCCAAWIVVCWPLCLLPCLDSSDNKEYLYCSSCNAFLGIYNREKRCIRPSKEFVTCCSAATPPPK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00618017;
- 90% Identity
- iTF_00485538;
- 80% Identity
- -