Dtsa003176.1
Basic Information
- Insect
- Drosophila tsacasi
- Gene Symbol
- -
- Assembly
- GCA_018904565.1
- Location
- JAEIHY010008186.1:224-2678[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0005 0.05 14.4 0.9 1 23 82 105 82 105 0.97 2 13 1.9 1.9e+02 3.1 0.2 1 23 257 279 257 279 0.91 3 13 4.2e-05 0.0042 17.8 2.7 2 23 282 303 282 303 0.97 4 13 1.6e-05 0.0016 19.1 0.2 3 23 311 331 309 331 0.98 5 13 1.3e-07 1.3e-05 25.6 4.1 2 23 338 359 337 359 0.97 6 13 1.2 1.2e+02 3.7 0.4 5 23 372 390 369 390 0.95 7 13 0.32 32 5.6 5.4 3 23 397 418 395 418 0.93 8 13 0.034 3.4 8.6 0.2 2 23 429 449 428 449 0.96 9 13 1.3e-05 0.0013 19.4 0.4 1 19 455 473 455 477 0.95 10 13 8.1e-06 0.00081 20.0 0.4 1 23 485 507 485 507 0.98 11 13 2.4e-05 0.0024 18.5 7.6 1 23 513 535 513 536 0.96 12 13 5.1e-05 0.0051 17.5 6.5 1 23 541 563 541 563 0.98 13 13 0.00062 0.062 14.1 6.1 1 23 569 591 569 592 0.96
Sequence Information
- Coding Sequence
- ATGATGAAGGCTCTGGAAGACCAATTGAGCTTCGACTTTAATGCGATTGATGATGAGGCCTCATCCAGCTCTAGAAAGAGCCAGCTAACGGATATCGTCCCAAATGCGGCCACCTCCTCCACTTCCACGTCATCGGCTTTGCTGGCGGGTCCACCAATAGCTTCGACGTCAAGGGCTGCCGCTGAGGCGGCCGCGGAGGCGGCGGCTGCTTTCGCCCAGCGAAAACCACATCGCCGCAAGCTGTACAAGTGCCCCCATTGCGAAACCATCTTCGAGAAGCTGAAGGAGCGGAATGCCCACATGATTAGCGACCACAACTATGTGCGTCAAAACCGAAGACTCATCTGCACCCAGCAGGTCGGTGAGCCGATGCTGCCCCAGCAGCATGCCCAGTTGCTGCTGCAAACGGACGAGGCTGTGCATGAGGACTCCAAGGATGGCATTGTGAAGATCAAGCAGGAGCAGTGTTCGGATAAGCCGGAAGTCGAGCAATTGCACCACGCCAATTCTGCGGAGCTGCTGTCGGATGTCAAGGACTCGGAGCTACTGGGCATCGGCGGCGAGGGCGATGCGGACCTGGACGGCGATATTAAGCCACCCAGCCAGCTATTTGAGAAGTCGTCGCCACTGCCGCCGCTGGCCATGACAACGCCGGCAGCAAAGCTGGCGGCGCTTTATCGCATGCTCATCGCCTACAATGAATCGAAGCTGGGCCAGGAGCGCAACAACCTCAGCGAACTGGAGCAGAAGGCGATGGAGAAGTCCATATTTCTGTGCTACGTCTGCCGCACCGACTTTCCCTCCGTCAAGCTTTACGACGCCCATCTTACTGAGCACCCGGCCGAATGTTTCACCTGCGGGAAGAAGTTCTACCGCTGGAAGAACTTCTCGCTGCACCTGAAGCGGCATCTGGGCTGGAAGGAGTTCGGCTGTTATGTGTGCGACAAGAAGTTCGTGGTGCGCAGCGCCCTCGTCGAGCACATGCGGATGCACACAGGCCAGACGCCGCTCAAGTGCAAGATATGCGGGAAAAAGTTCAAGCGCTACTCGAATCTGACGCAGCATCGCAAGCGCCACACCAAGGTGATGGTGCGAAAGAAGGAGTACGTGTGCCACTGCGGCGAGGTGCTGCCCTCAAAGGCGCGCTTCCTCTGGCACAAGGAGACGCACGACTTGAAACCGAAGTGCTGCCCGTATTGCTGTGACCGATTCGTGCACGCCAACTCGCTGCGCCGCCACATACGGCTGGCGCACTCGGACAAGTTCGACTACGCCGAGCCGATGGAGTGCCCCATGTGCAAGCAGATCTTCGCCAAGACCTCGATCAAGGCCCACATGGCGACGCACTCGACGGAGCCGCAGTACGACTGCGCCATCTGCAACAAGAGCTTCTCCACCAAATGGAATCTCAAGATCCACTCGTGGGTCCACGCCAACCGGACGGCCAAGCCCTTCAAGTGCGAGTACTGCCCGAAGGCGTTTGTGCGCGAGCTGGACTTCAAGAACCACATCAATGCGCACAAGCAGATCAAGCCGTACACGTGCGAGTACTGCGGCTGCAAGTTCATCCGCAAGTACAACTACATGCGGCACCGACGCGAGCACCACGGCACCAAGAAGTTCACCTGCGACCAGTGCGACAAGTCCTTCCACCGGCACTACTATCTGATCGAGCACCGGCGCATGCACACCGGCGAGCGACCCTTCACCTGCACCATTTGCGGCAAGAGCTCCACCACCAAGACCAACCACAACAAGCATCTGAAGATCCATCACTCGCGCGACCCCTTCACCGTGGAGGTCTAA
- Protein Sequence
- MMKALEDQLSFDFNAIDDEASSSSRKSQLTDIVPNAATSSTSTSSALLAGPPIASTSRAAAEAAAEAAAAFAQRKPHRRKLYKCPHCETIFEKLKERNAHMISDHNYVRQNRRLICTQQVGEPMLPQQHAQLLLQTDEAVHEDSKDGIVKIKQEQCSDKPEVEQLHHANSAELLSDVKDSELLGIGGEGDADLDGDIKPPSQLFEKSSPLPPLAMTTPAAKLAALYRMLIAYNESKLGQERNNLSELEQKAMEKSIFLCYVCRTDFPSVKLYDAHLTEHPAECFTCGKKFYRWKNFSLHLKRHLGWKEFGCYVCDKKFVVRSALVEHMRMHTGQTPLKCKICGKKFKRYSNLTQHRKRHTKVMVRKKEYVCHCGEVLPSKARFLWHKETHDLKPKCCPYCCDRFVHANSLRRHIRLAHSDKFDYAEPMECPMCKQIFAKTSIKAHMATHSTEPQYDCAICNKSFSTKWNLKIHSWVHANRTAKPFKCEYCPKAFVRELDFKNHINAHKQIKPYTCEYCGCKFIRKYNYMRHRREHHGTKKFTCDQCDKSFHRHYYLIEHRRMHTGERPFTCTICGKSSTTKTNHNKHLKIHHSRDPFTVEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00546102;
- 90% Identity
- iTF_00483112;
- 80% Identity
- -