Dtru016780.1
Basic Information
- Insect
- Drosophila truncata
- Gene Symbol
- ham
- Assembly
- GCA_008042515.1
- Location
- VNJQ01000333.1:41364-43058[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2.5e-05 0.12 12.6 0.2 9 45 313 349 302 353 0.89 2 3 0.0016 7.5 6.8 0.5 21 45 353 377 349 382 0.89 3 3 0.00016 0.74 10.0 0.2 20 45 381 406 376 410 0.89
Sequence Information
- Coding Sequence
- ATGAGAGTTATGAGAGAGAAAGACCACTCACCAAGAAAGATGCTTCCTAGCCCGAAACAGGGCTGCGTATACCCTGCCTTAGGATTAGTGCCCACATCGTATATATCACACGTACCTTATGAGCTGGCCTCCTCGCTGGTggccaacaccaccaccacctcctcctcatcctcgtcgtcctcgtcctcgccaACGAcgacagcggcggcggcggcggcgggtggCGGCAGGCTTTCCAGCCAGCTGCATCCTCaacaccatcatcatcatcataatcatcatcacTCCCACAATCATCACCACCAGCTAAGCCACCATGCCAAGGGCAAGCGGAGGAGCAGCTTTGACCAGCCGCTGGACCTGCGATTGGCTCACAAAAGGAAGACGGAGCAGCCGACGGGTCCGCTGGAGGATGAGAACAGTAACCTGATTGTGTtcaaggagaaggagctgaAGGAGCTGAATAACAACCATATAGCCGCCTCGCTGGCCGATCTGGGCTTCGATATGAGCCGGAAGATGCTGAGGGCGCTGCGAGAGGGAGCTCCTCCAGTGGTGCCAACTGTAGTTCCTCCGGTTGTGCCAGCTACAGGACCAGGTCCCGCCTCGCTACCCGCCGTTCATCCCACGCTGCTGGAGGCCATGACCAAGAATCTGCCGCTGCAGTACCGCAATGTGTTCGCCGGGGTGACCAGTCCGGGCTCAGGAGCGGCGGCCACGGGAGCGAATGTGAGTCCCACCGGGCCAGACTTTCCTTTTCGTCATCCGCTCAAGAAATGTGAGCTCACCTGGCCGCCACCCacagagcagctgctgcaggtgcAGGTGGAGCTGCCGCATCAGTCCAACCCGAAGCTAACCCAGCAGCATCCCCAGCTGCAGGACTATCAGACGCGAAGGAAAAACAAGGCCAGAGCCAGTGCTGCCCCAGGCGGAGCTCCTGGCACCACGAATCCCAATCTGCCGCAGCGAAACAAGGACCGGTATACGTGCAAGTTCTGCGGGAAGGTCTTTCCACGATCCGCGAATCTCACGCGGCATTTGAGGACGCACACCGGCGAGCAGCCGTACAAGTGCAAATACTGCGAACGTTCCTTCAGCATCTCCTCCAATCTGCAGCGTCACGTGCGGAATATCCACAACAAGGAGCGACCCTTCAAGTGTGAGATCTGCGAGCGCTGCTTTGGCCAGCAGACGAACCTGGACAGGCACCTCAAGAAGCACGAGTCGGACGCAGTGTCGCTGAGTGCTCTGTCCGGGGTAAGCGAGAGGATGCATTGTATACGGCGCTTCTGCGAGAATCCCTCCGAGGAGTCCTACTTCGAGGAGATACGCAGCTTCATGGGCAAGgtgacgcagcagcagcagcagcaacaggagcaggagcaggaacggGAAAGGGATCAAgagcgggagcaggagcaacgtCAGTCAACATCGGCAACATCGGCGGCCGGCAGTTCGTGTTCCTCGCCCACCTCCTCGCAGGCAGAGGAGGCCACACCCACTGGGCCCTGCcaagcggaggaggaggaggactcgCAGCCCATACAGGAGCTCAAGAAGACGCTGGCCTCCAAGCTGTTTCCGCCAAAAGAAGTGGCCGTCAAGGCCGAggaactttaa
- Protein Sequence
- MRVMREKDHSPRKMLPSPKQGCVYPALGLVPTSYISHVPYELASSLVANTTTTSSSSSSSSSSPTTTAAAAAAGGGRLSSQLHPQHHHHHHNHHHSHNHHHQLSHHAKGKRRSSFDQPLDLRLAHKRKTEQPTGPLEDENSNLIVFKEKELKELNNNHIAASLADLGFDMSRKMLRALREGAPPVVPTVVPPVVPATGPGPASLPAVHPTLLEAMTKNLPLQYRNVFAGVTSPGSGAAATGANVSPTGPDFPFRHPLKKCELTWPPPTEQLLQVQVELPHQSNPKLTQQHPQLQDYQTRRKNKARASAAPGGAPGTTNPNLPQRNKDRYTCKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKERPFKCEICERCFGQQTNLDRHLKKHESDAVSLSALSGVSERMHCIRRFCENPSEESYFEEIRSFMGKVTQQQQQQQEQEQERERDQEREQEQRQSTSATSAAGSSCSSPTSSQAEEATPTGPCQAEEEEDSQPIQELKKTLASKLFPPKEVAVKAEEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00480453;
- 90% Identity
- iTF_00492534;
- 80% Identity
- iTF_00613083;