Basic Information

Insect: Drosophila truncata
Gene Symbol: -
Assembly: GCA_008042515.1
Location: VNJQ01005553.1:155467-161844[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 9.2e-12 2.1e-08 33.8 0.0 1 40 676 716 676 719 0.90

2 4 5.1e-14 1.2e-10 41.0 0.1 2 39 731 768 730 771 0.94

3 4 1.2e-17 2.8e-14 52.6 0.0 1 45 785 830 785 830 0.98

4 4 1.2e-19 2.8e-16 59.0 0.0 1 43 837 880 837 881 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	9.2e-12	2.1e-08	33.8	0.0	1	40	676	716	676	719	0.90
2	4	5.1e-14	1.2e-10	41.0	0.1	2	39	731	768	730	771	0.94
3	4	1.2e-17	2.8e-14	52.6	0.0	1	45	785	830	785	830	0.98
4	4	1.2e-19	2.8e-16	59.0	0.0	1	43	837	880	837	881	0.97

Sequence Information

Coding Sequence: ATGCctgagatggagatggagatggaggtgGAGGTAGAGACGAAGATGGTGAGGGTGAGGGTGAGGGGCCTCTTGCGCACCGCCGAACAACTAAAGATCAAGGGCCTATGCGAAACCGCCGAGAATGCGGATGATTTGAACGACGCTGCCACAGCAACAATCACAGTTTCGGAGAACATTCAGCAGGCGGTTGTGGGAAACATTGTGAATGCAACCATAGTTCCTGGAGCACCTTCGCCCTCTTtggaacagcaacaacagcagcagcaacaccatcAGTCAcaagaccagcagcagcagcagcaggttcattcccagcaacagcagcagcagcagcagcaaatcaaCGCCGCCTTGCTGACGCAACACGGAGCAGTGCCCAGTGGCAGCAGTGGTGTTTCCCTCTCCGGACAGTTGTTGAGCTCCACAGCGAGCGGCAGTAGCGGTAGCTCCGGTTCCGGCGGACAGCCAAGTTCACTGACGCCATCCGGCGGCCTGCAGGCGACGCCACGCAAGTCCCGGCTAAAGAGATCCAAGTCACCGGATTTGCCGACAGGTTCTGGGAGCTCTGGTGCCTCAAGCAACTCACAGCAGCAGTCACAGCAGCAACCGCAGCCAGCACACCACCATCCCCACCAGACCATTCTCATCCAGGGCCAGAATCCCACCTCGATTGTTAGCCTACAGCAGACGGCCGACGGCAACTATATACCGGTGGGAGCAGGAACTGGCGACGAATCGGACACCGAGAACGATCACGATCACGAGCACGAACACGAGCATATCCACgggcacggacacggacatcCGCACGGACACggccacagtcacagtcacagtcacgaCCACGATCACGATCACGATCACGACCACGAGCTCGAGAATAAAccgaataagatctgcaagaCGGAACATTCGGTGGCATCGCCGGCTTCCAATTCATCGAGCGCCAACTCAAACAATGCAGCGGGCGTGAGCGGCGGCGTGTCTACCACCGGCAACCAAGCCATCGTCACACAAATTGTAGTAGCGCGCGACggaaaagatacaaaaaatatgactaGTTTAGGCATGGGCATGAACGGCGGCCTGTTGGGCGTGCCCATGGGATTCCTGGACTTTACACCCGAGCCACCAGCACCATCCGCCACCCCAGTCACCGTTACGGAGCACGTCGATCTGTCCTGCAACCCCAGCACGGACACGCGCGATCTATCAAATCCCACCGAACCGCTCGACATTGACAATCATTTGGCCCAGCAAATACATCGGCTCGATCAGTCCCCCATGCACTCGATATCCCATCACCACACCGGCGATGAGAGCAACTCGAATCTGGTGCAGCACATCAAAAGCGAGGTGATCGAGGCCAAGCACctggcagctgctgcccaGCAGCATGCTCTCAAtcaggcccagcagcagcagcagcagcagcaacagcagcatgcCCATCACcaagcccagcagcagcaccaacaacaacagcagcatcaacagcagcagcagcagcaacaacagcagcagcagcaacagcagcatctccATGCCCAGCAGTTGCAGGcccagttgcagcagcaacagcagcagcagcaacaacaccaccagcagcaacagcaggcggcagcagcagcggccgcagcagctgctgcaggtgtGCATGGCCAACATGGGGGACACGTGACGCACGCCGATATTGGTGGAGCCACAGTCATGGAGATCGATCCGAGCCAAATTAAACACGAGCCGGGCATGATAATAACGCCAGAGATTGTCAATATGATGTCCTCAGGACATATGGACATGTACAATTCGGACACGAGCGAGGATTCAATGATGATCGCCAACGGCTCGCCACATGATCAGAAGGAGCCGCACTATACGAATTTGGACCAGCAGCACGGTCTGGGCGGCGGCAGCGTTTGTGGCCCTGGGCcaggtggtgctggtggtggtgggggcATGAGTGGTGgggctggctctggctctggcgaGAAAGGTCAGTTTAATGGTCCCAAAGCTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTAAAGAACCAAAACATGAGCCTGACGAAAGCATCCGCCATTTATGGCATCCCATCGACCACCCTGTGGCAACGTGCTCATCGTTTGGGCATCGAAACGCCCAAGAAGGAGGGCGGAACCAAGTCATGGAACGAGGATGCTCTGCAGAATGCCTTGGAGGCGTTACGTTCGGGTCAGATATCCGCGAACAAAGCGTCCAAGGCCTTTGGCATACCCTCATCGACGCTCTACAAGATTGCCCGACGGGAGGGCATCCGCCTAGCGGCACCGTTCAATGCCGCCCCAACCACGTGGACGCCCGAGGATCTGGAGCGTGCCTTGGAGGCGATACGGGCGGGTAATACATCGGTGCAGAAAGCAAGTGCAGAGTTTGGCATACCAACAGGAACACTTTATGGACGCTGCAAGCGGGAGGGCATTGAGCTGTCGCGTTCGAATCCAACGCCTTGGTCCGAGGATGCCATGAACGAGGCCCTCAACTCGGTGCGTGTCGGCCAAATGTCCATCAACCAGGCGGCCATCCACTACAACCTGCCCTACAGCTCGCTCTACGGGCGCTTCAAGCGTGGCAAATACGATGTGGTGGCCAATACGAGTGGCGTGGCGCTGCTCAACACCTCGGGCAATACCACCGGCAGCATTGAGATTATCGAGCACAGTCAGGAGAATTCGTTGCACATGTTGCAGCAACAGTTCCCGTATAGTCCGTCGCCTCATCCGCCAACGCCGCAGCATCACAGCACGCCGCAACATCATAGCTCGGGGCAGGGGCCGCCAACGCCGCAGCacatgcagcagcaacagcacgtGGTGCATATGCAACAGCAGTCGCCCCATCCGGGTCACCATCCGCAGCACATGCAGCAGGATGTGGTCACATCGAGCAGCCAGGTGGTGCacagccaacagcagcagcagcagcttcagcagATCTATCAGCACCACGGGACGCCGGAGCGTAGTTGA
Protein Sequence: MPEMEMEMEVEVETKMVRVRVRGLLRTAEQLKIKGLCETAENADDLNDAATATITVSENIQQAVVGNIVNATIVPGAPSPSLEQQQQQQQHHQSQDQQQQQQVHSQQQQQQQQQINAALLTQHGAVPSGSSGVSLSGQLLSSTASGSSGSSGSGGQPSSLTPSGGLQATPRKSRLKRSKSPDLPTGSGSSGASSNSQQQSQQQPQPAHHHPHQTILIQGQNPTSIVSLQQTADGNYIPVGAGTGDESDTENDHDHEHEHEHIHGHGHGHPHGHGHSHSHSHDHDHDHDHDHELENKPNKICKTEHSVASPASNSSSANSNNAAGVSGGVSTTGNQAIVTQIVVARDGKDTKNMTSLGMGMNGGLLGVPMGFLDFTPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEPLDIDNHLAQQIHRLDQSPMHSISHHHTGDESNSNLVQHIKSEVIEAKHLAAAAQQHALNQAQQQQQQQQQQHAHHQAQQQHQQQQQHQQQQQQQQQQQQQQQHLHAQQLQAQLQQQQQQQQQHHQQQQQAAAAAAAAAAAGVHGQHGGHVTHADIGGATVMEIDPSQIKHEPGMIITPEIVNMMSSGHMDMYNSDTSEDSMMIANGSPHDQKEPHYTNLDQQHGLGGGSVCGPGPGGAGGGGGMSGGAGSGSGEKGQFNGPKAWTQDDMNSALDALKNQNMSLTKASAIYGIPSTTLWQRAHRLGIETPKKEGGTKSWNEDALQNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVVANTSGVALLNTSGNTTGSIEIIEHSQENSLHMLQQQFPYSPSPHPPTPQHHSTPQHHSSGQGPPTPQHMQQQQHVVHMQQQSPHPGHHPQHMQQDVVTSSSQVVHSQQQQQQLQQIYQHHGTPERS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00619072;
90% Identity: iTF_00594628;
80% Identity: -