Basic Information

Gene Symbol
kipf
Assembly
GCA_018150885.1
Location
JAECWT010000076.1:1419972-1423878[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 0.0089 0.59 10.5 0.1 1 20 302 321 302 323 0.93
2 20 0.00018 0.012 15.8 1.5 3 23 332 352 331 352 0.98
3 20 0.0029 0.19 12.0 0.3 1 20 407 426 407 428 0.88
4 20 0.0063 0.42 10.9 6.9 1 23 431 453 430 453 0.97
5 20 0.0012 0.078 13.2 0.9 1 23 459 481 459 481 0.97
6 20 0.45 30 5.1 0.3 1 23 487 510 487 510 0.93
7 20 5.5e-06 0.00037 20.6 0.9 1 23 729 751 729 751 0.98
8 20 3.6e-06 0.00024 21.2 5.5 1 23 759 781 759 781 0.98
9 20 5.4e-05 0.0036 17.4 1.8 1 23 787 809 787 809 0.97
10 20 0.043 2.9 8.3 4.2 1 23 816 838 816 838 0.97
11 20 0.024 1.6 9.1 3.6 1 23 844 866 844 866 0.96
12 20 7.2e-06 0.00048 20.2 0.8 1 23 872 894 872 894 0.98
13 20 6.9e-06 0.00046 20.3 0.6 1 23 900 922 900 922 0.97
14 20 8.5e-05 0.0057 16.8 2.8 1 23 928 950 928 950 0.98
15 20 1.6e-06 0.00011 22.2 2.3 1 23 956 978 956 978 0.98
16 20 8e-06 0.00053 20.0 1.6 1 23 984 1006 984 1006 0.98
17 20 0.0013 0.086 13.1 0.2 1 23 1012 1034 1012 1034 0.95
18 20 0.00085 0.057 13.7 1.7 1 20 1040 1059 1040 1061 0.94
19 20 5.4 3.6e+02 1.7 1.1 1 23 1068 1091 1068 1091 0.91
20 20 0.041 2.7 8.4 0.1 1 21 1094 1114 1094 1115 0.91

Sequence Information

Coding Sequence
ATGGAAAATGTGTGCCGAGTGTGTCTGGACGGCTCCGTCACACTTGTGGACATTTTTGCGGATATCTGCGATCCAAAACTGGACCGCATCGAACACAATGCCGCCCATGTGCTGCGACAGTGCTGGAACGTCGATGTGCAGCGCGGCGATGCTATGTCGCAGTATATATGCCTCTCGTGCATTCAGGCAGCCCAAAATGCATATCGTTTCAAGCTAATATTAGAACAAAGCATGGAAAATTATCGTCAACTTACCACAAAGAAAACGAAGCAGCCACCTGCGGCGGCCACCACACGTTGTCGTTTAGTATTGGCAAAAGTTTCGGAAAATGAAGAAACGTATACCATAGAAAATAGCGACGAGGAGGAGGATCTCATGCGTGCAAACGAAAGCCTGGAGATGGAGCCAGAGCAGGAAATCGCGGTGCCGGCCGAGAAGTCGGACGACGTAGTTGAGCATTACGTTTATGATGAGTCTCGCAAGTGCATCATCTTTCCCTCTGAAAGCAATGAGAAAGATCCAATGGCTGAAAAGCAGACGGAGACTATCCTTAATTTTAACATTGACGCAGATGATGCGGTTGAGGAAGACACTTGCATATTGAGGAATCCGCTAAAGGAATTTGCTGATAGACAGGCTCGTATGAAGATTAACGTTGAAATAGAAGACATGCCCGAGCTGGCTCAGGTGGCAGAACCAACACTTAACAATCTAATATTAGAGCACGATCCCACAAAAGAGGAGGCTCGCATATGCAAGAAAGTCAATAAGATGCAGGAAACTGGGACAACTGATCGGCAGCCTTTCGATAAAGAGGACTCTCCAGATGTGATGGAACTTCTCATGAGCATATCAACGGATACCGAGAAGGACGAAATTGATACCCAGTCGAAGTTAACACCATTTGAGTGCAACTGGTGCAGCAAAGTAATCTCGCGCAAAGAAAATATAAAGTGGCATGAATTGCGTCAATGCGGCAAGTTGTCGAATTTCTGCAAGGTGTGTGGCAACGGATTCATGACTCAGTTCCAGCTAAATAGACACATGTCCCGTCACAATAACAATCAGAAGTCCAAAAGCAAAAGAAAACCCCTTGAAATTAAGAACACTTATCGTAGTCCGTCACCCAAAAAGAAGAAACTAGAAGACAGTCACAAGAATGATCGTCAGGTTCGTAAGGAGAGCATTTCTCCCAGAAAAAATCGTAGCACCGAGGAATTTCCTTGTCCGGAATGCAACAAGAGGTTCGACTCGAAGGAAAAGCTCGATTTTCACATGAATGAGATGTGCCATAAATGTTCCCAGTGCTCACGCTTCTATGCAAATAAACGCAGTCTAATGCGACACCTCAAGGATCACAATACATTGGCAGTCTTTGATTGCCGCCGTTGCCCGCGCTCATTCACGGAATTCGATGACTTGCTGGTGCACAAGAACACCCACAAAAACGATGGACCATTCAACTGCGTTCAATGCAATGCAGAATTCAACGACGTCATTTATCTGCACATCCACGCTAAGCTGGAGCATAGCCAAGAAGTTACAGGAACTTCAACACTGAAGCAAAGCCAAGGAGATACAGGAAATACTCCCCGTAGTTCCACGAAACGGAACAAATCGGATCACCATCAAGAACAAGGGCAACTGGAGCGCAGCCAAAAAGATACATTAGCCTTAAAACTGGAGCGCGGCCAAGGAGATGAAGGAGCATTAAAACTGGAGCATAGCGAAGGAGATTCACGAGCATTAAAACTGCAGCATAGCCAAGGAGATACAGGAGCTACTCCCCGTAGTGCCAGGAAACAGATCAAATCGGATCGCTATCAAGAACAAGAGCAACTGGAGCGTAACCAAAAAGATACATCAGCTTCAAAACTGGAACGTAGCCAAGGAGTTACAGGAGCTACTCCCCGTAGTGCCAGGAAACAGATAAAATCGGATCACCTTCAAGAACAAGGGCAACTGGAGCGCAGCCAAGAAGTTACTGGAGGTACTACCCGTGGGGCCAGGAAACTGATAAAATCGAAGCAGATTGATTCAGAAATGCTTTCCCCAAGTCGCTCAAGGAGTCCATCATTGCCAAAGAAGATGAAGTGCAGCGACGACACCGACGACATCGACGATACCGACGACACTGATACATCAAGCTATACCAAGAGCACATCATTGCCAAAAAAACTGAATTTTGCGTGCAAGAAGTGCGATAAGACATTTGCTTCAGTAACTAGCCTGTCTGCTCACACTCGTACGCACTCGGATGTCGGAAGTCCTCACCACCAATGCACGTATTGCAAAAAGACATTTAATCGCAGGTATCAACTGGTTCAGCACATTCGTAATCACACTGGCGAACGTCCTTACGAGTGCCCGCACTGCGACAAGAAATTTCAGCTCAAGTGGTCCCTTAATAGGCACAGTCTTGTTCACACTACTGTGGACGGTCCTTTCGCGTGCTCACATTGTAGCAAGACATTTTTGAGCAAGTTAGACTTGAATGAACACGCTTGTACGCACTCTGCCGCACGTCCTTACGAGTGCACACAGTGCGACAAAAAATATTCGTGGAAGCATACCCTGGATAAACACCTGCTCTTTCACGCTGGGCAGCTTCCTTACAAGTGCTGGGACTGTGGCAAGAAATTTGAGAGCAAGCATGAATTGATTGGACACGCTCTTACGCACTCTGACCATCGTCCTTACAAATGCTTGATTTGCGATATGGCATTTAAGAATAAGTATATGCTACGAAGGCATGGTCTTGTACACTCTAGAGAGAGTCCTCACGAGTGCTCGCAATGCAACAAGAAATTTTTGCGCAAGGGTCAATTGAATGCACATGTTCGTACGCACTCTGACCAACGTCCTTACGAGTGCACGCAATGCGACAAAAAATTTAAGACCAATCAATCGTTGAACAGGCACACTCTAATTCACACTAACGAACGCCCTTACGAGTGCTCGCAGTGCGACAAAAAATTTATGAGAAAGTACGACCTGAAGGAGCACACTCTTATTCACATTGGCGAATATAATTTCAAATGCTCAGACTGTGGCATGAATTTTCTGCGCAGGCGTGACCTGACTGCGCACGCTGTTATTCACACTGGCGAACTTCCGTACAAGTGTTTAGCTTGCAACAAGAAATTTCGATTCAAGTATAACCTGGAATCGCACACCATCAAGTATACGGGTAAAGGTCCCTACAACTGCATGCTCTGCGCCATGAAATTTGAGCAGGAGTGTGTGCTAAATCAACATGTTACTCTTACCCACGAGTCGCACGAGTGCTTGCCCTGCGAAAGAAAATTCAGTTCAATTGCGGATCTTGAGGAACATATGCGAGGGTGCGACAAGAAGATATTCGACGAAAGTTTCAAACTGGAGATGCAGAAAATGGCGGCGTCTAACAAAACGCCAAAACGCTAA
Protein Sequence
MENVCRVCLDGSVTLVDIFADICDPKLDRIEHNAAHVLRQCWNVDVQRGDAMSQYICLSCIQAAQNAYRFKLILEQSMENYRQLTTKKTKQPPAAATTRCRLVLAKVSENEETYTIENSDEEEDLMRANESLEMEPEQEIAVPAEKSDDVVEHYVYDESRKCIIFPSESNEKDPMAEKQTETILNFNIDADDAVEEDTCILRNPLKEFADRQARMKINVEIEDMPELAQVAEPTLNNLILEHDPTKEEARICKKVNKMQETGTTDRQPFDKEDSPDVMELLMSISTDTEKDEIDTQSKLTPFECNWCSKVISRKENIKWHELRQCGKLSNFCKVCGNGFMTQFQLNRHMSRHNNNQKSKSKRKPLEIKNTYRSPSPKKKKLEDSHKNDRQVRKESISPRKNRSTEEFPCPECNKRFDSKEKLDFHMNEMCHKCSQCSRFYANKRSLMRHLKDHNTLAVFDCRRCPRSFTEFDDLLVHKNTHKNDGPFNCVQCNAEFNDVIYLHIHAKLEHSQEVTGTSTLKQSQGDTGNTPRSSTKRNKSDHHQEQGQLERSQKDTLALKLERGQGDEGALKLEHSEGDSRALKLQHSQGDTGATPRSARKQIKSDRYQEQEQLERNQKDTSASKLERSQGVTGATPRSARKQIKSDHLQEQGQLERSQEVTGGTTRGARKLIKSKQIDSEMLSPSRSRSPSLPKKMKCSDDTDDIDDTDDTDTSSYTKSTSLPKKLNFACKKCDKTFASVTSLSAHTRTHSDVGSPHHQCTYCKKTFNRRYQLVQHIRNHTGERPYECPHCDKKFQLKWSLNRHSLVHTTVDGPFACSHCSKTFLSKLDLNEHACTHSAARPYECTQCDKKYSWKHTLDKHLLFHAGQLPYKCWDCGKKFESKHELIGHALTHSDHRPYKCLICDMAFKNKYMLRRHGLVHSRESPHECSQCNKKFLRKGQLNAHVRTHSDQRPYECTQCDKKFKTNQSLNRHTLIHTNERPYECSQCDKKFMRKYDLKEHTLIHIGEYNFKCSDCGMNFLRRRDLTAHAVIHTGELPYKCLACNKKFRFKYNLESHTIKYTGKGPYNCMLCAMKFEQECVLNQHVTLTHESHECLPCERKFSSIADLEEHMRGCDKKIFDESFKLEMQKMAASNKTPKR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00564070;
90% Identity
-
80% Identity
-