Dtri015790.1
Basic Information
- Insect
- Drosophila triauraria
- Gene Symbol
- -
- Assembly
- GCA_014170255.2
- Location
- CM024337.1:28753080-28756427[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00019 0.015 15.7 0.7 3 23 182 203 181 203 0.96 2 15 0.00066 0.051 14.0 2.6 1 23 220 243 220 243 0.97 3 15 0.0045 0.35 11.4 3.6 1 23 314 337 314 337 0.96 4 15 0.0052 0.4 11.2 2.0 2 23 390 411 389 411 0.95 5 15 1 78 4.0 0.5 1 20 527 546 527 548 0.84 6 15 0.0063 0.48 11.0 0.7 1 23 557 579 557 579 0.95 7 15 0.0002 0.015 15.7 0.5 1 23 586 609 586 609 0.96 8 15 0.00039 0.03 14.8 1.4 2 23 618 639 617 639 0.96 9 15 0.012 0.93 10.1 0.0 2 20 666 684 665 690 0.92 10 15 0.0011 0.082 13.4 1.2 1 23 726 749 726 749 0.96 11 15 0.012 0.91 10.1 0.1 1 23 786 809 786 809 0.96 12 15 2.4e-06 0.00019 21.7 0.5 1 23 830 853 830 853 0.97 13 15 0.033 2.5 8.7 0.2 1 23 863 885 863 885 0.94 14 15 0.00019 0.015 15.7 3.6 1 23 891 913 891 913 0.99 15 15 5.4e-05 0.0042 17.4 1.0 1 23 919 941 919 941 0.97
Sequence Information
- Coding Sequence
- ATGACGCGGACGTGCAGAATCTGCGGCGGCGCTGACGGGCGCTACTGGATCGAGACGCCCGTGGAAAAGTACGCGGAGAAGACCTTCGGACAGCTGCTGGTGGAGCTAACGAGGATCGAGGTGGCTATGGCCCAGGCGGAGAAGTTCCCCCAGTGGCTGTGCACAGCCTGCACCCAGAAGCTGGAGAGCACCTACGACTTTGTGCTGCAGGCGCGCCAAACGCACGAGCTGTGGCTGCGCAAGCTGGACGACGACTCGGGGGACGAAATGCTGGGCCCCGAGGCCTTGGAGGCTCTTAGGGAGACGCCCATCAACCTTTTCGAAATTGAGGGCGTGACCATCAAGACCGAGGAGCTGGAGCCGCCGTCCAAGGTGGGAAAGAGCGCTGCCGCTGCCGACCCTTTGGTGCGCTCGCGCCTCGTCAAGCGAACCATCGTGCACTTCAGCGACTCGGACGGTGGGGACCAGGACGATGTCCCGCTGCGTCAGCGCAAGGTGTCGCCAGCCCCACAGCCCGCCTGCATCGAGGAGAAGCACAACATCTGCGAGGTGTGCAACAAGGCGTTCCGATACGTCACCAACCTGTATCGCCACAAGCAGCGGGATCACGGGCTGCCCCCCAAGCCGGGCGAGGAGATCGACGACGATGACAACTACTACAAGTGCGACCAGTGTGACAAGTCCTACAAGTACGTCATGGCGCTGGTGAAGCACAAGCACACCGAACACGGAGCGAGTCTCTTGCCCTCGAAGACGTCCAGGCGAAAGCTACCCGGCAGGCCCTCGGTGATGCCCGGCGATGCGAGTCCGTCTAGTCCAGCCTCTACTTTGGGAACCTCCACGCAGCGCAGCCGAGGCAATACTGACACTCTGGTCCACAGCATCATCAAGGCAGTCGAGCTGTCGGACGAAGATGGCAGCAGCAGCGCGGACAACTACTACAAATGCGATCAGTGTAGCAAGTCCTACAAGTACATTATCAGCCTGATCAAGCACAAGCACCGGGAGCACATGGACCAGAACAAGAAGCAGTCGGATTCGGAGGACGATCTGCCGCTGGCGTCCACGTCTGCCGCCTCAGCAGCCTCCACCAAGCCCTCGAGGATCAATCGACGCGTCGAGGACTTTGACCCGCATTGTTGTGAGCCCAATGGGGCCAAGGAAATTAAGTGCATGATTTGCCTGCGTCGTTTCACCAGATTGCGCGAGCTTAGGGATCACCTCCACGACCATCCCACGGACTTTGACTTCGAGGCACATGGAGAGCCCATCGAGCGCATAGCCGAGGGATTCTTCAAGACTGCCGTCGAGTCCACGACAGAGGGCTTAAAGCGTCGCATATTCCGAGACCTCAGGATGGGCGTCTACGGCCGCTACTATTCCATTACGAACCAAGCGCGCTACGAGATGAACATGGACAGCTCGGACACGGACAGCGAGGGTGACGACGCCGAGGCGGACGTAGTGCTGCGTCGCAGCTACGCCTGCGAGCTCTGTGACTCCCCAGAGGCCAGGTGGCCGCGGAAGTACCTCCTTCACCAGCACCACCGACAGGAGCACACCTGGCTGGATGCCCCGTATGTCTGTCAGCGCTGCGACTCCCGCTTCCTCAGTGCCCAGCTGCTGGAGCACCACACCAGCCAGCTGTGCCAGAACACGCTGAAGCGCTTCCAGTGCGACAAGTGTCCGCAGCGCTTCTTCTGGCGGCGGAACCTGCGCGCCCATCTCGTCGAGCACAAAAGCAAGCAAGAGAACTACCCTTGCGACCAGTGCTCTCGCAGCTTCCAGGACAAGAGCGCCGTGACCAAGCACAAGCTGATGGTGCACCGCGATGGTAACATGCAGCTCCTTCCCTGCCGCTGGTGCACGCGCACCTTCTACCGCCCGGCTCTGCTGCACAAGCACGTTCAGCGGCACGGCTTCAGTGGCCAGGATCTGCCGCTGGCCGAGACTCTGCTGGCGGACGCCTCCAAGCATTCGGGTCAGAAGAGCATCCAGTGCAAGATGTGCGAAATTCAGTTCATCAGCGTGGCGGATCTGCGTCGTCACGTCGCCATGCAGGCAGGCCACAGCGACCAGCCATCGGCGTACATGATTGGCACGGAAACTGGCTTCGAGCTGCAGCTGGAGGATACGGACGACAGTGATGAGGAGAGCCCCTTGTCCAGTAGGTCCTACAGGTGCGACCTCTGCGAACTGAGCTTCCGGCGCCGACGGGAGATGAGCGAACACCAGTACTCCTTGCACAGCTTTGACAAGCTGCCACATTCCTGCGAGCACTGCATCTTCAAGACTGTGGACAGGCACATGCTGGATCTGCACTTGAGCAGACAGTGCCGGAACAACGAGAAGAAGTTCGTCTGTCCGCGCTGTGGCTACAAGTTTATGTGGGAGGAGAATCTCGCCCTGCACCTGGCCACACAGCATCCCAAACAACCCACCATGCCGGAGCATCAGCAGCCATCGAGGAGGAAACGACGCTTCCGTTACCAGTGCCCCCATTGCTGGCGCTCCTTTGTCGTTCAGCCCAGTCTGGAGAAGCATATACGGGACATGCATGTGGCCAAGAAGAACCCGGGCAAGAAGTATCTCTGCTCGCTCTGCGGCCTGGAGTCGCTGACGCCCAACAAGCTGAACATCCATATGCGGCGCCACATGGGCGAAAAGCCGTTCAAGTGCGATCTCTGCGAAATGCGCTTCACGGTCCACTACGAGCTGAAAGTGCACCGCCGGAAGCATACGGGCGAGCGGCCCTATCAGTGCACCTTCTGTGCCAAGGACTTTGCCCGGCCGGATAAACTCCGGCGTCACGTCTTCATGCACAACGTCAAGTCATAG
- Protein Sequence
- MTRTCRICGGADGRYWIETPVEKYAEKTFGQLLVELTRIEVAMAQAEKFPQWLCTACTQKLESTYDFVLQARQTHELWLRKLDDDSGDEMLGPEALEALRETPINLFEIEGVTIKTEELEPPSKVGKSAAAADPLVRSRLVKRTIVHFSDSDGGDQDDVPLRQRKVSPAPQPACIEEKHNICEVCNKAFRYVTNLYRHKQRDHGLPPKPGEEIDDDDNYYKCDQCDKSYKYVMALVKHKHTEHGASLLPSKTSRRKLPGRPSVMPGDASPSSPASTLGTSTQRSRGNTDTLVHSIIKAVELSDEDGSSSADNYYKCDQCSKSYKYIISLIKHKHREHMDQNKKQSDSEDDLPLASTSAASAASTKPSRINRRVEDFDPHCCEPNGAKEIKCMICLRRFTRLRELRDHLHDHPTDFDFEAHGEPIERIAEGFFKTAVESTTEGLKRRIFRDLRMGVYGRYYSITNQARYEMNMDSSDTDSEGDDAEADVVLRRSYACELCDSPEARWPRKYLLHQHHRQEHTWLDAPYVCQRCDSRFLSAQLLEHHTSQLCQNTLKRFQCDKCPQRFFWRRNLRAHLVEHKSKQENYPCDQCSRSFQDKSAVTKHKLMVHRDGNMQLLPCRWCTRTFYRPALLHKHVQRHGFSGQDLPLAETLLADASKHSGQKSIQCKMCEIQFISVADLRRHVAMQAGHSDQPSAYMIGTETGFELQLEDTDDSDEESPLSSRSYRCDLCELSFRRRREMSEHQYSLHSFDKLPHSCEHCIFKTVDRHMLDLHLSRQCRNNEKKFVCPRCGYKFMWEENLALHLATQHPKQPTMPEHQQPSRRKRRFRYQCPHCWRSFVVQPSLEKHIRDMHVAKKNPGKKYLCSLCGLESLTPNKLNIHMRRHMGEKPFKCDLCEMRFTVHYELKVHRRKHTGERPYQCTFCAKDFARPDKLRRHVFMHNVKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00548234;
- 90% Identity
- iTF_00524559;
- 80% Identity
- -