Basic Information

Insect: Drosophila triauraria
Gene Symbol: salm
Assembly: GCA_014170255.2
Location: CM024334.1:14255974-14263619[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 1.9e-06 0.00015 22.0 1.7 1 23 332 354 332 354 0.98

2 8 2.7e-05 0.0021 18.4 3.5 1 23 360 382 360 382 0.98

3 8 1.9 1.4e+02 3.2 2.5 5 23 612 630 609 630 0.84

4 8 2.8e-08 2.2e-06 27.8 0.2 1 23 636 658 636 658 0.98

5 8 0.00085 0.065 13.7 0.9 1 23 668 690 668 690 0.98

6 8 0.042 3.3 8.3 0.1 2 23 905 927 905 927 0.96

7 8 9.2e-06 0.0007 19.9 5.0 1 23 1075 1097 1075 1097 0.96

8 8 7.3e-08 5.6e-06 26.5 0.7 1 23 1103 1125 1103 1125 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	1.9e-06	0.00015	22.0	1.7	1	23	332	354	332	354	0.98
2	8	2.7e-05	0.0021	18.4	3.5	1	23	360	382	360	382	0.98
3	8	1.9	1.4e+02	3.2	2.5	5	23	612	630	609	630	0.84
4	8	2.8e-08	2.2e-06	27.8	0.2	1	23	636	658	636	658	0.98
5	8	0.00085	0.065	13.7	0.9	1	23	668	690	668	690	0.98
6	8	0.042	3.3	8.3	0.1	2	23	905	927	905	927	0.96
7	8	9.2e-06	0.0007	19.9	5.0	1	23	1075	1097	1075	1097	0.96
8	8	7.3e-08	5.6e-06	26.5	0.7	1	23	1103	1125	1103	1125	0.98

Sequence Information

Coding Sequence: ATGTGTTCAATATTTCGCAACCGCATCAATTACCGTGGGACTGGCGGCACCAGGAGCGGCAGCGGGGAGCGGGACAGGGATCGAGAGCGGGATCGTGACAGAGACAGAGGCCGGGACCGGGACAGGGACACCCTGCTGGCCAAGGAGCTGGATGCGGACAGCAATAATAATGGCACCGAGCCGCGGGTGGAACCGGAAGTGGAGGCGGCTCCCGACTGCTCCGACACGGAAAGGGAGGCGGCCCCGGAGGAGCAGGAACAGGAGCTGGACAACAGCAACGAGGCACTGGATCTGTCGGTGATCTCGGCCAGCGGCCGCGGATCGCTGCCGGGCAGTGGTCACGTCTCGCTGGAGGCTTTACAACATACCAAAGTGGCGGTGGCCCAGTTTGCGGCCACAGCGCTGTCCGGAGGAGTGGGAGGAGGCCAGTCCCCGGATCTGGCCATGGTGCAGTCCACCATCTTCAATGTGCAGCGGCAGCATCTGATGCAGCTGCAGCTCATCCAGCACCTGCAGAGTCAATTGAAAAGGGCCGAGGCCGTGGCCCTGGGCAGGCATCCCCAGAGCGACGAGGAGGAGGATGAAGCCGAGACGGAGACGGAGCCGGAGCCCAAGGAGCAGCCAAGCAATGGCCTGAAGGAGCAGGAGACGGAACAGGAGGAACAGGAACCGGAACCGGAACGGGAGCTGGAGGAGAGTTCAAAGACTGACAAGGCAAGGACGACTGAGGAGAGAAGAGGAGGAGGGCAGGCGGAGATCGACTCGGACTATCAGCCGATGATGTGCGACATCAGCTCGAGCCTGGCCTCGAGCATCATCACCAACCACGATCCCCCGCCGGCCCCCAACGAGCCCAACTGCCTGGAGATGCTGCAGCGCCGCACGGAGGAGGTGCTCGACTCCGCCTCCCAGAGCCTGCACGCCGCCCAGCTGCAGGAGGAGTACTCGGAGTACGCCTCCAAGGAGGCCCAGAGCCGGGGCGAGATATTCAAGCACCGCTGCAAGTACTGCGGCAAGATCTTCGGCAGCTACTCCGCCCTCCAGATCCACCTGCGCTCGCACACCGGCGAGCGGCCCTTCCACTGCAACGTCTGCGGCAGCAAGTTCACCACCAAGGGCAACCTGAAGGTCCACTATCAGCGGCACACGCAGATCTTTCCGCCCATGCTGCTGCCGCCGGGTGTGGCTCCCTCCTCCTCCGGACAGGGACAGAGTCAGGTTCCACCCCAAGCCGAGCAGTTTCCCATGCGTCTGCCCTTTGTGCCGCCAGCGATTCCGGCGGGTCAGGAGCAGGTGCCGCAGCAGGCCGAGGAACAGGAGGAGATCAGGCCGGAAGTTCCGGCTCAGCAGGCCGAGGATCTCAGCAAGCCGGTGATCAGGGAAAGGGAAAAGGTGCAGGAGAAGGCGCACTCGCCCGTGGAGCGGGTCAAGACCCCCAAAGAGGTGACGCCCGAGGTCAAGGCCAGGCCACCAGCCATCCCGGCTGAGCCCTCGCCCGAGAAGCCCGAGAAGGAAGCTCCTGCCAAGCCCGCGGTGACTCCATCCCGCCGGAATGGCTCCGTAAGGAAGAGACAGACGAGCAGCGCTGGGAGTCCGCCGCAGGAGGACCGGGAACGGGATCTCGCCGAGCACCTGCACATAGCCAAGCTGGTGAGGCGCTCCTCCTCGAGCCGGGAGTCCCAGCCCGCGGAGTACTCGCTCGCCCAGATGGAGCGCATCATCGACAAGTCGTGGGAGGACCTCATCGAGATCGACAAGACCTCGGAGACCTCGAAGCTGCAGCAGCTGGTGGACAACATCGAGAACAAGCTGACCGACCCCAACCAGTGCATCTTCTGCCAGAAGGTCATGTCCTGCCGCAGCTCCCTGCAGATGCACATCCGCACCCACACCGGCGAGCGACCCTTCCGCTGCAAGATCTGCGGCCGGGCCTTCGCCACCAAGGGCAACCTGAAGGCCCACATGAGCATCCACAAGATCAAGCCGCCGATGAGGAGCCAGTTCAAGTGCCCGGTGTGCCACCAGAAGTTCTCCAACGGCATCATCCTGCAGCAGCACATTCGTATCCATACCATGGACGATGGCAGCGGTGGTCAGGGAGCTGCTCCCTCGACTCCCGGCGAGGCCGAGCGCCTGGGCATCGAAGATCAAAACTCGAACAAGTCCCTGGGCACCTCGGATACCCTGGACTTCTCCACCACCATCTCGGATCACTCGGGCCAGAGGTCGGAGTCCTCGCAGGGCGGCGACTTTGACGAGTTTATGACCATGGACAGTACGGATGACTCCAGGGATAACTCGAGTGCGGCAACAGCCACGCCGCATCCCATGGAGAGGGATAGGGACAGGGACAGGGAGAGGGATCGGGAGCGTAGGCCACCCAATGATGGCTCCGATGAGAGATCCCACTCCAATCCCGACTTGGGCGGCGGACGCTCTGAGAGTGGAGAGATGCCCGCCATGGATCTCTCCTCGCCCTCGTCAGCCTCTGGACGGATCTTCGGTGCTGGTATGGTCAATGGCGCAGGTGGAGCAGGAGGCGGAGCAGCTGGAGCTGGTGGTCTGCCCATGCTAGGAATGCCCATGCCGCCGAATCTGCTGCTCATGGCGGCTGCCCGCGAGGAGATGCACGCCCTGGGTCATGCCCATGCCAAGTTCCCGCTGCTGCCCTTTGGTCCTCTTGGATTTATGGGCCTGCACCCGCCCCCCAATGTGTGCAATCTCTGCTTCAAGATGCTGCCCAGCCTGGCTGCCTTGGAGAGTCATCTGCAGAGCGAACATGCCAAAGAACCGGCCACGGGCCACGCCCACGCCCACCGCCCCCACTGCAACGAAGCTGGATCGTCGTACGGTGCCAAGCTCACTCTCAACCCGAATCTGTTTGCAAAGAAGCCGCCTTCGTCGGGTGACAAGCAGCCGCCGGAATCGTCACCCCGGCCGGTGTCTCACAGCTCTGAGGTTCCCCCAGCGACGCCGATCAAGGAGGAGCCCGATCAGGATCATCTGGCGCTGGAGGAGGGTGCCTCCTCGGCTGGCGAGGGATCGGGATCTGCTGCTGGTGGTGCCTCCAGCTACCCGCCAGAGGCCGGCGATGCCGAGCAGTCGCTGATGAAGATGCAGCTTCATGCCAATCGTTTCCCGGCCAGCCCACTTGACTTTCAGCAGGCTCTAATGTCCGCTGGACCACCGAGTTCCAGCCTGGATCCGCCGGTGAACAATAAGCACTTTTGCCACGTCTGCCGGCGAAACTTTAGCTCGAGTTCCGCCCTCCAGATCCACATGCGGACCCACACGGGCGACAAGCCCTTCCAGTGCAATGTCTGCCAGAAGGCCTTCACCACCAAGGGGAATCTTAAGGTCCACATGGGCACTCACATGTGGACGAATCCCACTTCGCGGCGAGGGCGTCGCATGTCTCTGGAGCTGCCCATGCGTCCGGGCCCCAACTCGGGCGCTGGACATCCAGGATCGAGTGCCGAGCAGGAGTTTATGCAGCGAAGACCGGAGCTCTTCTTTCCCTACCTGCCGCCCTTTTTCAATGGATTGCCGCCAAAAGCCTGCATCCGTACGGCATGGAGCGGAGGAGCAGCAGCAAGTCACCCACCAGAGCCGGCCCAGAGTCCCTCCCTGAGAGAGGAAGAAATGGGGGCCGGCAGCATTTGGCATCCGCTGAGCAGGATCAAGGTGGAGGGCAGCCAGCAGGATGAGCAGGCGGAACCAGACGCAGAGCCTGCTGGAGGTGGCGCGGACATGGAGGAGTCAGAGTCGAGAGATGCCGAGAAGTAA
Protein Sequence: MCSIFRNRINYRGTGGTRSGSGERDRDRERDRDRDRGRDRDRDTLLAKELDADSNNNGTEPRVEPEVEAAPDCSDTEREAAPEEQEQELDNSNEALDLSVISASGRGSLPGSGHVSLEALQHTKVAVAQFAATALSGGVGGGQSPDLAMVQSTIFNVQRQHLMQLQLIQHLQSQLKRAEAVALGRHPQSDEEEDEAETETEPEPKEQPSNGLKEQETEQEEQEPEPERELEESSKTDKARTTEERRGGGQAEIDSDYQPMMCDISSSLASSIITNHDPPPAPNEPNCLEMLQRRTEEVLDSASQSLHAAQLQEEYSEYASKEAQSRGEIFKHRCKYCGKIFGSYSALQIHLRSHTGERPFHCNVCGSKFTTKGNLKVHYQRHTQIFPPMLLPPGVAPSSSGQGQSQVPPQAEQFPMRLPFVPPAIPAGQEQVPQQAEEQEEIRPEVPAQQAEDLSKPVIREREKVQEKAHSPVERVKTPKEVTPEVKARPPAIPAEPSPEKPEKEAPAKPAVTPSRRNGSVRKRQTSSAGSPPQEDRERDLAEHLHIAKLVRRSSSSRESQPAEYSLAQMERIIDKSWEDLIEIDKTSETSKLQQLVDNIENKLTDPNQCIFCQKVMSCRSSLQMHIRTHTGERPFRCKICGRAFATKGNLKAHMSIHKIKPPMRSQFKCPVCHQKFSNGIILQQHIRIHTMDDGSGGQGAAPSTPGEAERLGIEDQNSNKSLGTSDTLDFSTTISDHSGQRSESSQGGDFDEFMTMDSTDDSRDNSSAATATPHPMERDRDRDRERDRERRPPNDGSDERSHSNPDLGGGRSESGEMPAMDLSSPSSASGRIFGAGMVNGAGGAGGGAAGAGGLPMLGMPMPPNLLLMAAAREEMHALGHAHAKFPLLPFGPLGFMGLHPPPNVCNLCFKMLPSLAALESHLQSEHAKEPATGHAHAHRPHCNEAGSSYGAKLTLNPNLFAKKPPSSGDKQPPESSPRPVSHSSEVPPATPIKEEPDQDHLALEEGASSAGEGSGSAAGGASSYPPEAGDAEQSLMKMQLHANRFPASPLDFQQALMSAGPPSSSLDPPVNNKHFCHVCRRNFSSSSALQIHMRTHTGDKPFQCNVCQKAFTTKGNLKVHMGTHMWTNPTSRRGRRMSLELPMRPGPNSGAGHPGSSAEQEFMQRRPELFFPYLPPFFNGLPPKACIRTAWSGGAAASHPPEPAQSPSLREEEMGAGSIWHPLSRIKVEGSQQDEQAEPDAEPAGGGADMEESESRDAEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00527496;
90% Identity: iTF_00483139;
80% Identity: -