Basic Information

Insect: Drosophila auraria
Gene Symbol: salm
Assembly: GCA_008042615.1
Location: VNJW01005531.1:53012-60724[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 1.9e-06 0.00019 22.0 1.7 1 23 333 355 333 355 0.98

2 8 2.6e-05 0.0026 18.3 3.5 1 23 361 383 361 383 0.98

3 8 1.8 1.8e+02 3.1 2.5 5 23 613 631 610 631 0.84

4 8 2.7e-08 2.7e-06 27.7 0.2 1 23 637 659 637 659 0.98

5 8 0.00082 0.082 13.6 0.9 1 23 669 691 669 691 0.98

6 8 0.041 4.1 8.3 0.1 2 23 905 927 905 927 0.96

7 8 8.8e-06 0.00088 19.8 5.0 1 23 1075 1097 1075 1097 0.96

8 8 0.00022 0.022 15.4 0.4 1 17 1103 1119 1103 1120 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	1.9e-06	0.00019	22.0	1.7	1	23	333	355	333	355	0.98
2	8	2.6e-05	0.0026	18.3	3.5	1	23	361	383	361	383	0.98
3	8	1.8	1.8e+02	3.1	2.5	5	23	613	631	610	631	0.84
4	8	2.7e-08	2.7e-06	27.7	0.2	1	23	637	659	637	659	0.98
5	8	0.00082	0.082	13.6	0.9	1	23	669	691	669	691	0.98
6	8	0.041	4.1	8.3	0.1	2	23	905	927	905	927	0.96
7	8	8.8e-06	0.00088	19.8	5.0	1	23	1075	1097	1075	1097	0.96
8	8	0.00022	0.022	15.4	0.4	1	17	1103	1119	1103	1120	0.95

Sequence Information

Coding Sequence: ATGTGTTCAATATTTCGCAACCGCATTAATTACCGTGGGACTGGCGGCACCAGGAGCGGCAGCGGGGAGCGGGACAGGGATCGAGAGCGGGATCgtgacagagacagagaccgGGACCGGGACAGGGACACCCTgctggccaaggagctggaTGCGGACAGCAATAACAATGGCACCGAGCCGCGGGTGGAACCGGAAGTGGAGGCGGCTCCCGACTGCTCCGACACGGAAAGGGAGGCggcccaggaggaggagcaggaacaggagctgGACAACAGCAACGAGGCGCTGGATCTGTCGGTGATCTCGGCCAGCGGCCGCGGATCGCTGCCGGGCAGTGGTCACGTCTCGCTGGAGGCTTTACAACATACCAAAGTGGCGGTGGCCCAGTTTGCGGCCACAGCGCTGTCCGGAGGAGTGGGAGGAGGCCAGTCCCCGGATCTGGCCATGGTGCAGTCCACCATCTTCAATGTGCAGCGGCAGCATCtgatgcagctgcagctcatcCAGCACCTGCAGAGTCAATTGAAAAGGGCCGAGGCCGTGGCCCTGGGCAGGCATCCCCacagcgacgaggaggaggatgaagccgagacggagacggagccgGAGCCCAAGGAGCAGCCAAGCAATGGCCTGAAGGAGCAGGAGACGGAACAGGAGGAACAGGAACCGGAACCGGAACGGGAGCTGGAGGAGAGTTCAAAGACTGACAAGGCAAGGACGACTGAGGagagaagaggaggaggacagGCGGAGATCGACTCGGACTATCAGCCGATGATGTGCGACATCAGCTCGAGCCTGGCCTCGAGCATCATCACCAACCACGATCCCCCGCCGGCCCCCAACGAGCCCAACTGCCTGGAGATGCTGCAGCGCCGCACGGAGGAGGTGCTCGACTCCGCCTCCCAGAGCCTGCACGCCGCCCAGCTGCAGGAGGAGTACTCGGAGTACGCCTCCAAGGAGGCCCAGAGCCGGGGCGAGATATTCAAGCACCGCTGCAAGTACTGCGGCAAGATCTTCGGCAGCTACTCCGCCCTCCAGATCCACCTGCGCTCGCACACCGGCGAGCGGCCCTTCCACTGCAACGTCTGCGGCAGCAAGTTCACCACCAAGGGCAACCTGAAGGTCCACTACCAGCGGCACACGCAGATCTTTCCGCccatgctgctgccgccgggTGTGgctccctcctcctccggaCAGGGACAGAGTCAGGTTCCACCCCAGGCCGAGCAGTTTCCCATGCGCCTGCCCTTTGTGCCGCCAGCGATTCCGGCGGGTCAGGAGCAGGTGCCGCAGCACGCAGAGGAACAGGAGGAGATCAGGCCGGAAGTTCCGGCTCAGCAGGCCGAGGATCTCAGCAAGCCGGTGGTCAGGGAAAGGGAAAAGGTGCAGGAGAAGGCGCTTTCGCCCGTGGAGCGGGTCAAGACCCCCAAAGAGGTGACGCCCGAGGTCAAGGCCAGGCCACCACCCATCCCGGCTGAGCCCTCGCCCGAGAAGCCCGAGAAGGAAGCTCCTGCCAAGCCAGCGGTGACTCCATCCCGCAGGAATGGCTCCGTGAGGAAGAGACAGACGAGCAGCGCTGGGAGTCCGCCGCAGGAGGACCGGGAACGGGATCTCGCCGAGCACCTGCACATAGCCAAGCTGGTGCGGCGCTCCTCCTCGAGCCGGGAGTCCCAGCCCGCGGAGTACTCGCTGGCCCAGATGGAGCGCATCATCGACAAGTCGTGGGAGGACCTCATCGAGATCGACAAGACCTCGGAGACCTcaaagctgcagcagctggtggACAACATCGAGAACAAGCTGACCGACCCCAACCAGTGCATCTTCTGCCAGAAGGTCATGTCCTGCCGCAGCTCCCTGCAGATGCACATCCGCACCCACACCGGCGAGCGACCCTTCCGCTGCAAGATCTGCGGCCGGGCCTTCGCCACCAAGGGCAACCTGAAGGCGCACATGAGCATCCACAAGATCAAGCCGCCGATGAGGAGCCAGTTCAAGTGCCCGGTGTGCCACCAGAAGTTCTCCAACGGCATCATCCTGCAGCAGCACATCCGCATTCACACCATGGACGATGGCAGCGGTGGTCAGGGAGCTGCTCCCTCGAATCCCGGCGAGGCCGAGCGCTTAGGCATCGAAGATCAAAACTCGAACAAGTCCCTGGGCACCTCGGATACCCTGGACTTTTCCACCACCATCTCGGATCACTCGGGCCAGAGGTCTGAGTCCTCGCAGGGCGGCGACTTTGACGAGTTCATGACTATGGACAGTACGGATGACTCCAGGGATAACTCGAGTGCGGCAACAGCCACGCCGCATCCCATGGAGAGGGatagggacagggacagggagaGGGATCGGGAGCGTAGGCCACCCAATGATTGCACCGATGAGAGATCCCACTCCAATCCCGACTTGGGCGGCGGACGCTCTGAGAGTGGAGAGATGCCCGCCATGGATCTCTCCTCGCCCTCGTCAGCCTCTGGTCGCATCTTCGGTGCTGGTATGGTCAATGGAGCAGGTGGAGCAggcggaggagctggagctggtggtCTGCCCATGCTAGGGATGCCTATGCCCCCAAATCTGCTGCTCATGGCGGCTGCCCGCGAGGAGATGCACGCCCTGGGTCATGCCCATGCCAAGTTCCCGCTGCTGCCCTTTGGTCCTCTTGGATTTATGGGCCTGCACCCGCCCCCCAATGTGTGCAATCTCTGCTTCAAGATGCTGCCCAGCCTGGCTGCCTTGGAGAGCCATCTGCAGAGCGAACATGCCAAAGAACCGGCCacgggccacgcccacgcccaccgcCCCCACTGCAACGAAGCTGGATCGTCGTACGGTGCCAAGCTCACTCTCAACCCGAATCTGTTTGCAAAGAAGCCGCCTTCGTCGGGTGACAAGCAGCCGCCGGAATCGTCACCCCGGCCGGTGTCCCACAGCTCTGAGGTTCCCCCAGCGACGCCGATCAAGGAGGAGCCCGATCAGGATCATCTGGCGCAGGAGGAGGGCGCCTCCTCGGCTGGCGAGGGATCGGGatctggtgctggtggtggctcCAACTACCCGCCTGAAACCGGCGATGCCGAGCAGTCGCTGATGAAGATGCAGCTTCATGCCCATCGTTTCCCGGCCAGCCCACTTGACTTTCAGCAGGCTCTCATGTCCGCTGGACCACCGAGTTCCAGCCTGGATCCGCCGGTGAACAATAAGCACTTTTGCCACGTCTGCCGGCGAAACTTTAGCTCGAGTTCCGCCCTCCAGATCCACATGCGGACCCACACGGGCGACAAGCCCTTCCAGTGCAATGTCTGCCAGAAGGCCTTCACCACCAAGGGGAATCTTAAGGTGCGAATGGAGGAAGTACACATGGGCACTCACATGTGGACGAATCCCACTTCGCGGCGAGGGCGTCGCATGTCTCTGGAGCTGCCCATGCGTCCGGGCCCCAACTCGGGCGCTGGACATCCAGGATCGAGTGCGGAGCAGGAGTTTATGCAGCGAAGGCCGGAGCTCTTCTTTCCCTACCTGCCGCCCTTTTTCAATGGATTGCCGCCAAAGCCTGGTGAACTCAGTCCCGGCGCCTTTCCCAACATCCCGCCGCCGCCCTTTGCCAACGGAGGCAAGTATCCCTATCCACCCGGGCTCCTAGGCTTCCCTGGCTTCCTGGGACAGCATCCGTACGCCATGgagcggaggagcagcagcaagtcACCCACACCAGAGCCGGCCCAGAGTCCCTCCCTGAGAGAGGAAGAAATGGGGGCCGGCAGCATTTGGCATCCGCTGAGTCGGATCAAGGTGGAGGGCAGCCAGCAGGATGAGCAGGCGGAACCAGACGCAGAGCCTGCTGGAGGCGGCGCGGACATGGAGGAGTCAGAGTCGAGAGATGCCGAGAAGTAA
Protein Sequence: MCSIFRNRINYRGTGGTRSGSGERDRDRERDRDRDRDRDRDRDTLLAKELDADSNNNGTEPRVEPEVEAAPDCSDTEREAAQEEEQEQELDNSNEALDLSVISASGRGSLPGSGHVSLEALQHTKVAVAQFAATALSGGVGGGQSPDLAMVQSTIFNVQRQHLMQLQLIQHLQSQLKRAEAVALGRHPHSDEEEDEAETETEPEPKEQPSNGLKEQETEQEEQEPEPERELEESSKTDKARTTEERRGGGQAEIDSDYQPMMCDISSSLASSIITNHDPPPAPNEPNCLEMLQRRTEEVLDSASQSLHAAQLQEEYSEYASKEAQSRGEIFKHRCKYCGKIFGSYSALQIHLRSHTGERPFHCNVCGSKFTTKGNLKVHYQRHTQIFPPMLLPPGVAPSSSGQGQSQVPPQAEQFPMRLPFVPPAIPAGQEQVPQHAEEQEEIRPEVPAQQAEDLSKPVVREREKVQEKALSPVERVKTPKEVTPEVKARPPPIPAEPSPEKPEKEAPAKPAVTPSRRNGSVRKRQTSSAGSPPQEDRERDLAEHLHIAKLVRRSSSSRESQPAEYSLAQMERIIDKSWEDLIEIDKTSETSKLQQLVDNIENKLTDPNQCIFCQKVMSCRSSLQMHIRTHTGERPFRCKICGRAFATKGNLKAHMSIHKIKPPMRSQFKCPVCHQKFSNGIILQQHIRIHTMDDGSGGQGAAPSNPGEAERLGIEDQNSNKSLGTSDTLDFSTTISDHSGQRSESSQGGDFDEFMTMDSTDDSRDNSSAATATPHPMERDRDRDRERDRERRPPNDCTDERSHSNPDLGGGRSESGEMPAMDLSSPSSASGRIFGAGMVNGAGGAGGGAGAGGLPMLGMPMPPNLLLMAAAREEMHALGHAHAKFPLLPFGPLGFMGLHPPPNVCNLCFKMLPSLAALESHLQSEHAKEPATGHAHAHRPHCNEAGSSYGAKLTLNPNLFAKKPPSSGDKQPPESSPRPVSHSSEVPPATPIKEEPDQDHLAQEEGASSAGEGSGSGAGGGSNYPPETGDAEQSLMKMQLHAHRFPASPLDFQQALMSAGPPSSSLDPPVNNKHFCHVCRRNFSSSSALQIHMRTHTGDKPFQCNVCQKAFTTKGNLKVRMEEVHMGTHMWTNPTSRRGRRMSLELPMRPGPNSGAGHPGSSAEQEFMQRRPELFFPYLPPFFNGLPPKPGELSPGAFPNIPPPPFANGGKYPYPPGLLGFPGFLGQHPYAMERRSSSKSPTPEPAQSPSLREEEMGAGSIWHPLSRIKVEGSQQDEQAEPDAEPAGGGADMEESESRDAEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00527496;
90% Identity: iTF_00609325;
80% Identity: -