Dtei006433.1
Basic Information
- Insect
- Drosophila teissieri
- Gene Symbol
- -
- Assembly
- GCA_016746235.1
- Location
- CM028594.1:17990095-17993602[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.28 24 5.5 2.5 2 23 256 278 255 278 0.95 2 17 0.15 13 6.3 0.2 1 23 285 310 285 310 0.94 3 17 0.2 17 6.0 4.5 3 23 322 342 321 342 0.93 4 17 0.027 2.3 8.7 0.1 3 23 383 404 382 404 0.95 5 17 0.00084 0.073 13.4 0.6 3 23 412 432 410 432 0.95 6 17 0.083 7.3 7.1 0.1 1 23 440 463 440 463 0.96 7 17 0.00034 0.03 14.7 0.3 2 23 468 489 467 489 0.97 8 17 0.83 72 4.0 0.1 1 20 497 516 497 518 0.92 9 17 0.0024 0.21 12.0 0.4 1 22 537 558 537 561 0.90 10 17 0.13 11 6.5 1.5 3 21 568 586 568 587 0.90 11 17 1.6 1.4e+02 3.1 0.1 8 23 617 633 607 633 0.93 12 17 0.00059 0.051 13.9 0.3 2 23 653 675 652 675 0.93 13 17 0.0063 0.55 10.7 0.1 2 23 679 701 678 701 0.95 14 17 2.4e-05 0.0021 18.3 1.7 1 23 707 729 707 729 0.98 15 17 0.98 85 3.8 0.9 1 16 733 748 733 750 0.92 16 17 5.2 4.5e+02 1.5 0.1 12 23 753 765 752 765 0.85 17 17 9.6e-06 0.00083 19.5 0.2 1 23 769 797 769 797 0.89
Sequence Information
- Coding Sequence
- ATGTCGGAAAACGCGAAAAACAATAGCTGCCTGCATTGCAGCGTATTCAGTACGAAATACCAGTACCAGGAGATCTTCGATGAGTTTGGAATCGAACTGGGACTGCAGTCCCTGCTGGCCAAGCACTTCCTGTTCGAAGTGTCTCCCGATCCGCGGAAGCAGCAGCTCCTGTGCGAAGTTTGTGTCAACAATCTCATCCGCCTCTTTGACATTGATGAACTGGAAAGAGAAAGAGATGCTGCGAAGGATGTGGCCCAGTGCAAAGATCCCAAGGCGGTGGACCCCATCATCATTACCGAGGTCCATGCAACTCCACCAGCTGCAAAGCCCGAGCAGTTCAGTGTTCTTATACAAAATATTCTGGACGAAGAGGAAGCTATTGTTGAGGATGACAACGCAGTAAAAGAAGAGTCCAGTGAAGCTGCCCCCGAGGAAACAGAAACCCCGGGTCAAATAGTCATCCTAAACAGCGAGGCTGGGGCAGAAACTAATCTAGATGAGAATGTTTACATATACGAGCATGATGATGTTATGGATCCAAATTTGGACAATGTTAAGGTAAAACCAATAAGTGGTTCGTCTAGATTGGTAGCTCAAGCTGAAGAAAGTCAAAGCGATGATGACATCGACGAGGGAGAGACTAGCAATATTGTTCTGTTTAACTTTGTGGACATCAAAGAAAAGGATGATGTTGATAATATTCCGGAGTACTTGTCCACCGTGGTGAGGACAAGCTTTGAAAAGCTGACATTTGAGTGGTGCACTGTGTGCAAGCACTGCTCCCTGAAGTGTCCCACATTCGAGAGCCTTCTTGGCCATTTGTTAAAGGCCCACAAAACACGAAAAGATGTCCACCAGTGTCCTATTGAAGGATGCAACAAGGAATTGAAAGGTCGCAAATTCCTAGCCATGCATCTTGTTATGTTGCACGCACCAGTGGCTGAAATTGCGATCTATGGCTGCTGTCCAGAATGTAAACTGACGTTTTCAAACATTTTGCAGTACAACAAGCATTCTTGTGCTCATGTAATTAAAAAAAAGCGAGGTATTCGCTCATTTTGTGAAATGTGTTCGCTGGAGTTTCCTTCTTGGAAGCGTTTTAATTTCCACAACCAATTCCATCTAGAGAAGCACAGACCTCGAGCGTGCTTCGTCTGTGACTATGCTAGTACAAACATAGATGAACTTTTCCAGCATTTAAATTATGCGCATGAGCCAGTAGGAACTTTATTCTGCGACCTTTGCGACCGTACTTTCCGGGACCCTTCTGTTTTTATGGAGCACAATAAGTCACATGCCAATGTTAGCAGCACGACCTACTCTTGCGGCGAATGTATGGCGAACTTTGAGTCGCGGGGTCGGCTAAATGGACACATGAGAGCGATGCACGGCAGCGTAATAAGCTGTGAACTCTGTTCCCGCGAATTTGCCACTGAAGCTACTTACAATATTCACATGAAGAAGCATCTGATTATCGAAAAAGATGTGCACGTGTGCAGCACATGCGGTCTTTTAAGTGACAGCCGCGAAACCCTTCTTGCGCATGTGGATTCTGTGAAGACTGCCTGTTTTGGCTCCAAGATATACGTGGAACTCCTACGGGATGCTTATGTGTGCGAGTACTGCTCGTCGTACTTCAAAGAAAAGGACAGTCTCCAAGCCCATCGTGATTCCGGGGTACATAAGGATGGAGTGTTTTGGTGTCAGCCCTGCGGCAAAGAATTCGCGCATATGAAACTATATCGCCATCACCTCCGGAACTATCAACAACTTCGAGCGGACTCAACACATCGTAGGCTAGAAATTTGTGTTTACTACATGTGCGATCAGGAGGTGAGACAACTGTCAGAGTCTTACGTAAACTGGAACTCCTTATACACACACAAGCGACGTACACACGAATCCTCGAATAAGCAAGCGGAGAAGAGTTCAAGGAGTCATAACAATGATAACGTCACCTGTCCTTTATGCAATGCCTCATACAAGAGCCGTGATGCTCTGGCCAAGCACCATGCCTACTGGCATGAACCAATAGAGTGTCCGGAATGCTTTAAAATAGTCAAAAATCGACGGAACTATGACACTCATGTAAATGTTGTGCATTCAAATAAGAAGCGCTATTCTTGCAGTGTCTGTGAGAAGGGCTTTTATCACAAAAGTGAAATGGAGGCTCATCAAAAGCTTCATGGACAGTCTTACAACTGCGACCAGTGCAGCTTCACCACCAGGAACAAAAAGTCCCTTTCTGTTCCATGTTCTAGTCAGGGATTGAAGACGCACATGCAGCGAGCCCATGGGGATAAATACACGTGCCGCGACTACTTCGACGGCGGCTGTGGACGGACCTTTGTAAACAGTTCCCAGTTGAATGTGCATGTCCGAAAGGTCCACGACGGCATTATTTTGCTCCAGGAGGATGTGGTTGAAGAGGACGAATGCATCGCCGATGATGTTCCATCGACATCTAAAAAGCGCTGCCTTCGCTTGAATGAAAACAATATTGAGTTTATAGAGGAAGCAGATGGGGATGATATAGAACTGGAAGAGGATGACGATGAGGACGACGATTTTATCGACGAGATCCAAGATCAGGACCCACAAAATTGA
- Protein Sequence
- MSENAKNNSCLHCSVFSTKYQYQEIFDEFGIELGLQSLLAKHFLFEVSPDPRKQQLLCEVCVNNLIRLFDIDELERERDAAKDVAQCKDPKAVDPIIITEVHATPPAAKPEQFSVLIQNILDEEEAIVEDDNAVKEESSEAAPEETETPGQIVILNSEAGAETNLDENVYIYEHDDVMDPNLDNVKVKPISGSSRLVAQAEESQSDDDIDEGETSNIVLFNFVDIKEKDDVDNIPEYLSTVVRTSFEKLTFEWCTVCKHCSLKCPTFESLLGHLLKAHKTRKDVHQCPIEGCNKELKGRKFLAMHLVMLHAPVAEIAIYGCCPECKLTFSNILQYNKHSCAHVIKKKRGIRSFCEMCSLEFPSWKRFNFHNQFHLEKHRPRACFVCDYASTNIDELFQHLNYAHEPVGTLFCDLCDRTFRDPSVFMEHNKSHANVSSTTYSCGECMANFESRGRLNGHMRAMHGSVISCELCSREFATEATYNIHMKKHLIIEKDVHVCSTCGLLSDSRETLLAHVDSVKTACFGSKIYVELLRDAYVCEYCSSYFKEKDSLQAHRDSGVHKDGVFWCQPCGKEFAHMKLYRHHLRNYQQLRADSTHRRLEICVYYMCDQEVRQLSESYVNWNSLYTHKRRTHESSNKQAEKSSRSHNNDNVTCPLCNASYKSRDALAKHHAYWHEPIECPECFKIVKNRRNYDTHVNVVHSNKKRYSCSVCEKGFYHKSEMEAHQKLHGQSYNCDQCSFTTRNKKSLSVPCSSQGLKTHMQRAHGDKYTCRDYFDGGCGRTFVNSSQLNVHVRKVHDGIILLQEDVVEEDECIADDVPSTSKKRCLRLNENNIEFIEEADGDDIELEEDDDEDDDFIDEIQDQDPQN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00591851;
- 90% Identity
- -
- 80% Identity
- -