Basic Information

Insect: Drosophila tani
Gene Symbol: -
Assembly: GCA_008042535.1
Location: VNJO01002249.1:87516-89858[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.078 6.8 7.6 7.0 3 23 260 280 258 280 0.96

2 12 0.0034 0.29 11.9 0.5 1 23 286 311 286 311 0.93

3 12 0.0058 0.5 11.2 0.7 1 23 318 343 318 343 0.94

4 12 5.2e-05 0.0046 17.6 2.5 1 23 352 374 352 374 0.97

5 12 8.5e-05 0.0074 17.0 0.1 1 23 381 403 381 403 0.97

6 12 0.0069 0.6 11.0 0.5 1 23 409 431 409 431 0.97

7 12 0.026 2.3 9.1 1.3 1 23 437 460 437 460 0.97

8 12 0.011 0.97 10.3 4.5 1 23 466 488 466 488 0.96

9 12 0.00031 0.027 15.2 2.4 2 23 495 516 494 516 0.96

10 12 1.5e-05 0.0013 19.4 1.5 1 23 589 612 589 612 0.96

11 12 0.04 3.5 8.5 7.1 1 23 618 640 618 640 0.94

12 12 3.3e-06 0.00029 21.4 2.3 1 23 646 668 646 668 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.078	6.8	7.6	7.0	3	23	260	280	258	280	0.96
2	12	0.0034	0.29	11.9	0.5	1	23	286	311	286	311	0.93
3	12	0.0058	0.5	11.2	0.7	1	23	318	343	318	343	0.94
4	12	5.2e-05	0.0046	17.6	2.5	1	23	352	374	352	374	0.97
5	12	8.5e-05	0.0074	17.0	0.1	1	23	381	403	381	403	0.97
6	12	0.0069	0.6	11.0	0.5	1	23	409	431	409	431	0.97
7	12	0.026	2.3	9.1	1.3	1	23	437	460	437	460	0.97
8	12	0.011	0.97	10.3	4.5	1	23	466	488	466	488	0.96
9	12	0.00031	0.027	15.2	2.4	2	23	495	516	494	516	0.96
10	12	1.5e-05	0.0013	19.4	1.5	1	23	589	612	589	612	0.96
11	12	0.04	3.5	8.5	7.1	1	23	618	640	618	640	0.94
12	12	3.3e-06	0.00029	21.4	2.3	1	23	646	668	646	668	0.99

Sequence Information

Coding Sequence: ATGTCAATGTCTGACGGCAGAGAATACTCTATACACACCGTGTGCCGCACCTGTCTGTCCGCGCTGGACAACACGGCGGCCTACGATCTCTTCCTGGTGCCCGGCCTGGCCAAGAAGCTTTGTGTGTGCACCTCGCTGTCCGTGGAGCAGGCGGACGGCTTCCCCAAGAACCTCTGCACACTGTGCTACACCAAGCTGAACGACCTGCACGAGTTCCAGAAGCTGTGCGTGGACTCGGTGCAGAAATTCCAGGATCTGGTCGCCAGCAACGCCTTCGCCTGCCAGACCAACTTCGATGTGCTCGACCCGAGCGCCGCCGTTGCGGACCTGccgggcgaggaggaggacaacgTCCACTTCGATCCGCTGCTCAACTCCAAGATCGAGATCATTGAGAACGAGGAGGACGTCTTCAAGATGCTGGAGACCGTTGAAAAGGAGGTCGAGGAGGTGGAGAAGGAGGAcctggaggtggagctggagcagcccTTCGGCGACTTCTCGGCGGACGACTCCTTCGAGAGTGGCAACGACAACGACCAGGATGCGGACTTCCAGCTAAacagcagcgacgacgacatTCCGCTGGCCCAGCGCAGCAGGCGAGGAGCCACCCGGGGAGGCAAGTCCAAGGCCAAGAGCAAGGCCAAGCGAAACAAGGATGAATCCGATGAATCCAGCTCCTCGGACGACTCGGACGAGGACGACGGGTCCAAGGGCAAGTCCAAGCGCAAGCGGATACCGGCGGATGAGCGCGATCGCCACCGCCTGATCGACTGCCACATCTGCCACCAGAAGTTCAAGAAGGCCTTCCGCTACGAGGATCACATGAAGCACCACAACGATCTCCTGCCCTTCCAGTGCACCGTGGAGAGCTGCAAGAAGGGCTTCACCACCGCCAACGGGCTGCGCGTCCATGTGGAGCACGCCCACACGGACACCTCGGCCATGCATCCGTGCACCTACGAGGGCTGCAACAGGTCCTTCGCCCGGCCCGTGCTGCTCAGCTTCCACATGAAGCGCGTCCACAAGGTGGACACTCCCCAAAGGGACTTCCCCTGCACGGAATGCGACAAGGTGTTCCGCTGCCCCACGGCCCTCAAGAAGCACATGTACAAGCACACGGGCGAGGAGCTGCCCTTCGCCTGCGAGATCTGCGGCAAGCGCTTCCCCATCAACAGCGTCCTCCGCGACCATCTCCTCCGGCATGCGGGCATCAAGAACCACGTCTGCCCGTACTGCGGCGTGGGCAAGACCACGCGGCAGGAGTGGAACAAGCACATCCTCACCCACACCAAGGAGAAGAAGTACGAGTGCCGGCAGTGCGACCACGCCTCCCACAACAAGCAGGCGCTGGCCAACCACGTCAAGGTAGTCCATGAGAAGCGCAAGGACTTTGCCTGCCAGTACTGCGGCAAGACCTTTGGGAAGAGCCACGCCTGCAAGATCCACGAGAGGAGTCACACTGGGGACAAGTGCTGCGAGTGCAAGATCTGCGGCAAGGTGTTCCTCTTCGAGAAGGGCCTCACCAAGCATCTCAAGACGCACGAGAAGCGGGATCTGCCCAAGACGCAGCCCATCAATCCCCTGATGGGCGATGCTGCCGCCAGCACGTCGACCATTGCCAAGCCCAGTCCGCATCTGCGGGGGCGCGTGGAGCGCGTGGACATTGCCCAGCTGGCGGGCACGGTGGCCAATCCAATTCCCTCGGTCAACCTGCCGTCGTGGTCGCCGCAGGTGAACTTCACCAAGAAGGAGGGCCAGCACATCTGCCCGGACTGCGGCAAGGGCTTCAACCACGTGAGCAACATGAAGCTCCACTACAAGGTGGTGCACCAGAAGGTGAAGGActtctgctgccgcttctgccCCAAGAGGTTCGCCAAGAAGCAGTACCTCCGCCACCACGAGTACATCCACACGGGCGAGAAGCCGTACGAGTGCAAGGTCTGTGGCAAGCACTTCCGCCAGGAGCAGGTGCTCAAGACGCACATGAAGGTGCACGACAAGCCGCCCCGGCCGCCGGGCAAGCCCAAGGAGCCGGCCGGGCCCAAGGCCGAGAGCAGCACGACCgtgaagcggcagcagccgaaGAACTTTGAGCAGTACCAGGATCCGGCGGCAGAGCGGGCGGCGGCCACCGCGGAGCTGCTGGCCTACCAGATCGAGGAGAACGAGACCAAGCggaaggcggaggcggagctgCGGAAGATCCAGGAGGCGGCCTTCGAGCAGCTGAACAAGCTGCAGAAGCAGACGGGCACGTACCAGGGATTCTCCGCCCAGAAGGCCGAGGCGGAGGGCGGCAGCTCGGTGGATGCCCTCAAGTTTGACCACGTCTGA
Protein Sequence: MSMSDGREYSIHTVCRTCLSALDNTAAYDLFLVPGLAKKLCVCTSLSVEQADGFPKNLCTLCYTKLNDLHEFQKLCVDSVQKFQDLVASNAFACQTNFDVLDPSAAVADLPGEEEDNVHFDPLLNSKIEIIENEEDVFKMLETVEKEVEEVEKEDLEVELEQPFGDFSADDSFESGNDNDQDADFQLNSSDDDIPLAQRSRRGATRGGKSKAKSKAKRNKDESDESSSSDDSDEDDGSKGKSKRKRIPADERDRHRLIDCHICHQKFKKAFRYEDHMKHHNDLLPFQCTVESCKKGFTTANGLRVHVEHAHTDTSAMHPCTYEGCNRSFARPVLLSFHMKRVHKVDTPQRDFPCTECDKVFRCPTALKKHMYKHTGEELPFACEICGKRFPINSVLRDHLLRHAGIKNHVCPYCGVGKTTRQEWNKHILTHTKEKKYECRQCDHASHNKQALANHVKVVHEKRKDFACQYCGKTFGKSHACKIHERSHTGDKCCECKICGKVFLFEKGLTKHLKTHEKRDLPKTQPINPLMGDAAASTSTIAKPSPHLRGRVERVDIAQLAGTVANPIPSVNLPSWSPQVNFTKKEGQHICPDCGKGFNHVSNMKLHYKVVHQKVKDFCCRFCPKRFAKKQYLRHHEYIHTGEKPYECKVCGKHFRQEQVLKTHMKVHDKPPRPPGKPKEPAGPKAESSTTVKRQQPKNFEQYQDPAAERAAATAELLAYQIEENETKRKAEAELRKIQEAAFEQLNKLQKQTGTYQGFSAQKAEAEGGSSVDALKFDHV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00487459;
90% Identity: iTF_00612981;
80% Identity: -