Dtan013696.1
Basic Information
- Insect
- Drosophila tani
- Gene Symbol
- -
- Assembly
- GCA_008042535.1
- Location
- VNJO01013276.1:129371-132959[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00021 0.019 15.7 0.7 3 23 183 204 182 204 0.96 2 15 0.0064 0.56 11.1 2.8 1 23 221 244 221 244 0.97 3 15 0.0028 0.24 12.2 3.6 1 23 316 339 316 339 0.96 4 15 0.0041 0.35 11.7 1.7 2 23 392 413 391 413 0.95 5 15 0.15 13 6.8 0.6 1 20 529 548 529 550 0.85 6 15 0.007 0.61 10.9 0.7 1 23 559 581 559 581 0.95 7 15 0.00022 0.019 15.7 0.5 1 23 588 611 588 611 0.96 8 15 0.00043 0.037 14.8 1.4 2 23 620 641 619 641 0.96 9 15 0.0038 0.33 11.8 0.0 2 20 668 686 667 692 0.92 10 15 0.0012 0.1 13.4 1.2 1 23 728 751 728 751 0.96 11 15 0.013 1.1 10.1 0.1 1 23 788 811 788 811 0.96 12 15 2.7e-06 0.00023 21.7 0.5 1 23 832 855 832 855 0.97 13 15 0.036 3.2 8.7 0.2 1 23 865 887 865 887 0.94 14 15 0.00021 0.018 15.7 3.6 1 23 893 915 893 915 0.99 15 15 6e-05 0.0052 17.4 1.0 1 23 921 943 921 943 0.97
Sequence Information
- Coding Sequence
- atgacgCGGACGTGCAGAATCTGCGGCGGCGCTGACGGGCGGTACTGGATTGAGACGCCCGTGGAAAAGTACGCGGAGAAGACCTTcggccagctgctggtggagctTACGCGAATTGAGGTGGCTATGGCCCAGGCGGAGAAGTTCCCCCAGTGGCTGTGCTCCGCCTGCACCCAGAAGCTGGAGAGCTCCTACGACTTTGTGCTGCAGGCTCGCCAAACGCACGAGCTGTGGCTGCGCAAGCTTGAGGACGACTCCGGAGACGAAATGCTGGGCCCCGAGGCCTTGGAGGCTCTCAGGGAGACACCCATCAACCTGTTCGAAATTGAGGGCGTGACCATCAAGaccgaggagctggagccgccGTCCAAAATGGGCAAGAGCGCGGCCGCTGCCGATCCTTTGGTGCGCTCGCGCCTCGTCAAGCGCACCATTGTGCACTTTAGCGACTCGGACGGCGGGGATCAGGATGATGTGCCGCTGCGTCAGCGCAGGGTGTCGCCAGCGCCACAGCCCGCAGCCAGCGTGGAGGAGAAGCACAACATCTGCGAGGTGTGCAACAAGGCGTTCCGCTACGTGACCAACCTGTATCGCCACAAGCAGCGGGATCACGGGCTGCCCCCCAAGCCGGGCGAGGAGTTTGACGACGATGACAACTACTACAAGTGCGATCAGTGCGACAAGTCCTACAAGTATGTGATGGTGCTGGTGAAGCACAAGCACACCGAACACGGAGCGAGTCTCTTGCCCTCGAAGACGTCCAGGCGAAAGTTGCCCGGCAGGCCCTCCGTGATGCCCGGCGATGCGAGTCCCTCTAGTCCAGCTTCCACCTCGGGAACCTCCGCCACGCAGCGCAGTCGCGGCAATACTGACACCCTTGTCCACAGCATCATCAAGGCAGTCGAACTCTCGGACGAggatggcagcagcagcgtggaCAACTACTACAAGTGCGATCAGTGCAGCAAGTCCTACAAGTACATTGTCAGCCTGATCAAGCACAAGCACCGCGAGCACACCGCTGAGGACAAGAAGCAGTCGGACTCGGAGGACGATCTACCACTGGCCTCCACATCGGCAGCCTGTGCAGGCCCCTCGAAACCCTCGCGGATCAATCGACGCGTCGAGGACTTCGACCCGCATTGCTGCGAACCCAATGGGGCCAAGGAGATCAAGTGCATGATATGCCTGCGTCGGTTTACCAGGCTGCGCGAGCTAAGGGATCACCTCCACGCGCATCCCACGGACTTTGACTTCGAGGCCCATGGCGAGCCCATCGAGAGGATAGCTGAGGGATTCTTCAAGACTGCCGTCGAGTCCACGACGGAGGGCTTGAAGCGTCGCATATTCCGAGACCTCAGGATGGGCGTCTACGGCCGGTACTATTCCATAACGAATCAGGCGCGCTACGAGATGAACATGGACAGCTCGGACACGGACAGCGAGGGTGACGATGCCGAGGCGGATGTGGTGCTGCGTCGCAGCTACGCCTGCGAGCTCTGTGACTCCCCCGAGGCCAGGTGGCCGCGGAAGTACCTCCTGCACCAGCACCACCGGCAGGAGCACACCTGGCTGGAGGCCCCGTACGTGTGTCAGCGCTGCGACACCCGCTTCCTGAGtgcccagctgctggagcacCACACCAGCCAGCTGTGCCAGAACACGCTGAAGCGCTTTCAGTGCGACAAGTGTCCGCAGCGCTTCTTCTGGCGCCGCAACCTGCGCGCCCACCTCGTCGAGCACAAGAGCAAGCAAGAGAACTACCCCTGCGACCAGTGCTCGCGCAGCTTCCAGGACAAGAGCGCCGTGACCAAGCACAAGCTGATGGTGCACCGCGATGGGAACATGCAGCTCCTGCCCTGCCGCTGGTGCACGCGCACCTTCTATCGCCCCGCCCTGCTGCACAAGCACGTCCAGCGGCATGGGTTTAGTGGCCAGGATCTGCCGCTGGCCGAGACTTTGCTGGCGGACGCCTCCAAGCATTCGGGCCAGAAGAGCATTCAGTGCAAGATGTGCGACATTCAGTTCATCAGCGTGGCGGATCTGCGGCGTCACGTGGCCATGCAGGAAGGCCACAGCGACCAGCCATCGGCGTACATGATTAGCACGGAAACGGGCTttgagctgcagctggaggatACGGACGACAGCGATGAGGAGGGCTCAGCAACCAATAGAACCTACAGGTGCGACCTCTGCGAGCTGAGcttccggcggcggcgggagaTGAGCGAGCACCAGTACTCCCTGCACAGCTTTGACAAGCTGCCACATTCCTGCGAGCACTGCATCTACAAGACGGTGGACAGGCACATGCTGGACCTGCACTTGAGCCGACAGTGCCGGAACAACGAGAAGAAGTTCGTCTGCCCGCGCTGCGGCTACAAGTTTATGTGGGAGGAGAATCTCGCTTTGCATCTGGCCACCCAGCATCCCAAGCAACCCACCATGCCGGAGCATCAGCAGCCGTCGAGGAGGAAACGTCGCTTCCGCTATCAGTGCCCCCATTGCTGGCGCTCCTTTGTCGTTCAGCCTAGTTTGGAGAAGCATATCCGGGACATGCATGTGGCCAAGAAGAATCCGGGCAAGAAGTATCTCTGCTCGTTGTGCGGCCTGGAATCGCTGACGCCCAACAAGCTGAACATCCACATGCGGCGCCACATGGGCGAGAAGCCCTTTAAGTGCGATCTCTGCGAAATGCGCTTTACGGTCCACTACGAGCTGAAGGTGCACCGAAGGAAGCATACGGGCGAGCGGCCCTATCAGTGCACCTTCTGCGCCAAGGATTTTGCCCGGCCGGACAAGCTGCGGCGTCACGTCTTCATGCACAACGTCAAGTCATAG
- Protein Sequence
- MTRTCRICGGADGRYWIETPVEKYAEKTFGQLLVELTRIEVAMAQAEKFPQWLCSACTQKLESSYDFVLQARQTHELWLRKLEDDSGDEMLGPEALEALRETPINLFEIEGVTIKTEELEPPSKMGKSAAAADPLVRSRLVKRTIVHFSDSDGGDQDDVPLRQRRVSPAPQPAASVEEKHNICEVCNKAFRYVTNLYRHKQRDHGLPPKPGEEFDDDDNYYKCDQCDKSYKYVMVLVKHKHTEHGASLLPSKTSRRKLPGRPSVMPGDASPSSPASTSGTSATQRSRGNTDTLVHSIIKAVELSDEDGSSSVDNYYKCDQCSKSYKYIVSLIKHKHREHTAEDKKQSDSEDDLPLASTSAACAGPSKPSRINRRVEDFDPHCCEPNGAKEIKCMICLRRFTRLRELRDHLHAHPTDFDFEAHGEPIERIAEGFFKTAVESTTEGLKRRIFRDLRMGVYGRYYSITNQARYEMNMDSSDTDSEGDDAEADVVLRRSYACELCDSPEARWPRKYLLHQHHRQEHTWLEAPYVCQRCDTRFLSAQLLEHHTSQLCQNTLKRFQCDKCPQRFFWRRNLRAHLVEHKSKQENYPCDQCSRSFQDKSAVTKHKLMVHRDGNMQLLPCRWCTRTFYRPALLHKHVQRHGFSGQDLPLAETLLADASKHSGQKSIQCKMCDIQFISVADLRRHVAMQEGHSDQPSAYMISTETGFELQLEDTDDSDEEGSATNRTYRCDLCELSFRRRREMSEHQYSLHSFDKLPHSCEHCIYKTVDRHMLDLHLSRQCRNNEKKFVCPRCGYKFMWEENLALHLATQHPKQPTMPEHQQPSRRKRRFRYQCPHCWRSFVVQPSLEKHIRDMHVAKKNPGKKYLCSLCGLESLTPNKLNIHMRRHMGEKPFKCDLCEMRFTVHYELKVHRRKHTGERPYQCTFCAKDFARPDKLRRHVFMHNVKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00548234;
- 90% Identity
- iTF_00524559;
- 80% Identity
- -