Dtak000274.1
Basic Information
- Insect
- Drosophila takahashii
- Gene Symbol
- -
- Assembly
- GCA_018152695.1
- Location
- JAECXN010000052.1:6762259-6764837[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.012 0.76 10.2 3.7 3 23 274 294 272 294 0.97 2 12 0.00053 0.032 14.5 0.7 1 23 300 325 300 325 0.94 3 12 0.021 1.3 9.4 0.1 5 23 338 357 337 357 0.95 4 12 6.8e-05 0.0042 17.3 1.3 1 23 369 391 369 391 0.98 5 12 1.9e-06 0.00012 22.1 0.1 1 23 398 420 398 420 0.98 6 12 0.012 0.75 10.2 0.2 1 23 426 448 426 448 0.97 7 12 0.064 4 7.9 3.0 1 23 454 477 454 477 0.97 8 12 0.01 0.63 10.4 4.4 1 23 483 505 483 505 0.96 9 12 0.1 6.3 7.3 5.3 2 23 512 533 511 533 0.96 10 12 0.00011 0.007 16.6 0.2 1 23 644 667 644 667 0.95 11 12 0.098 6 7.3 1.3 1 21 673 692 673 695 0.75 12 12 1.6e-07 9.6e-06 25.6 3.0 1 23 701 723 701 723 0.98
Sequence Information
- Coding Sequence
- ATGAACGAGGGCAGGCAGTACTCGATCCACAGCCTGTGCAGGATCTGTCTGAACCACCTGCAGAACGACGCCGCCTACGATTTGTATCTGGTGCCAGGACTCTCGAAGAAGCTATGTTTCTGCACCTCCCTGTCCGTGGAGCAGAACGACGGCTTCCCGAAGAACCTGTGCACGCTGTGCTACACGAAACTGAATGACCTGCACGACTTCCAGAGGCAGTGCGTCGATTCGGTGCAGAAGTTCCAGGATCTGGTGGCCAGCAATGTCTTTGCCTGCCAGAGCAGCTTCGATGTCCTGGATCCCAATGTCGCCGTCCAGGATTACCAGGGCGAGGAGGAGGATCATGTCAACTACGATCCCCTGCTGAATCACAAGATGGAGCTGATCGAGAACGAGGAGGACGTCTTCAAGATGCTGGAGCATGTGGACAAGGAGGCCGAGGAGGTGGAGAACGGCGCCAAGGTGGAGCGCGAAGATCCGGATGAGGATCTGTCCATCAAGATGTTCGACGACGACGCTTCCTCGCTGGAGAGCGGCAATGACAACGACCACGACCTGGATTTCGAGCCCAACAGCAGCGACGATGACATTCCGCTGGCCCAACGGATGCGGGGAGTTCCAGCTGGAGGAACCTCCTCCTCCTCCTTGGCCAGCAAGCCCAAGGCGAAGCGGGGACGCCCCAAGAAGATCAAGCCGCCGCCGCCGGCGGACGAGGAGGAGATCAGCGGCTCCTCCGAGGACTCCGAGGATGACTCAGAGGACAAGCCGAAGAGGAAGCGCATTCCGCTGGAGGAGCGCCACCTGCACCGCATCATCGACTGCCACATCTGCCACCAGAAGTTCAAGAAGGCCATCCGCTACGAGGAGCACATGAAGTACCACAACGACCTGCTGCCCTTCCAGTGCAAAGTGGAGACCTGCAAGAAGGGTTTCACCACCGCCAACGGGCTGCGCATCCACATCGACCACGCCCACACGGAGCTCTCCGAGGTCCACGCCTGCATCGCCGAGGGCTGCGGCAAGACCTTCCCGCGCGTCCGCCTGCTCACCTTCCACATGAAGAAGGTGCATGGCATCACGAAGGCGGCTGCTCCTTTGCGCGACTTCCCCTGTCCCGAATGCGACACCGTCTTCCGCTGCCCCACGGCGCTCAAGAAGCACATGTACAAGCACACCGGCGAGGAGCTTCCCTATCCCTGCAACATCTGCGGCAAGCGGTTCGTGATCAACAGTGCTCTAAGGGATCACCTCATGCGGCATGCGGGCATCAAGAATCATGTGTGTCCCTACTGCGGAGTGGGCAAGACGACGCGCCAGGAGTGGAACGCCCATATCCTCACGCACACCAAGGAGAAGAAGTTCAAGTGCCGGCAGTGCGACCACGCCTCGCACAACAAACAGGCGCTGTCCAACCACGTGAAGGTGGTGCACGAGAAGCGCAAGGATTTCGCCTGCCAATACTGCGGCAAAACCTTTGGCAAGTCGCATGCCTGCAAAGTTCACGAAAGAAGTCACACGGGGGAGAAGTGCTGCGAGTGCAAGATCTGCGGCAAGATCTTCCTCTGCGAGAAGAGCCTCACCAAGCATTTGAAGACGCACGAGAAGAGGGATCTGCCGCCGGCGGAGCCCCATCGCCAGCAGCTCAACATTCCCATGCCGGGCCAAATGATGCCTGGCCAGATGCCCATGCAGATGCAGGCCGACGGCCTGGTCCAGATGGATCCCCATCAGATGCCCAGCGAGGAGATGCTCAAGGCTTGCGGCGGCGGCAGCGGCGGGTCCGCGGCAGTGCCTCCCAAGCCGAAGAACTCGCGGCGCGTCCAGCGGGTGGACATTTCCCAGCTGGCCGGCACCGCTGTGAATCCGATACCCTCGGTTTCGGTGCCCTCGTGGTCGCCGCAGGTGAACTTCACCAAGAAGGAGGGCCAGCACATCTGCCCAGGCTGCGGGCGCGGCTTCAACAACATCGGCAACATGAAGCTCCACTACAAGATCATCCACGAGAAGGTCAAGGACTTTGCCTGTCGCTTCTGCCCCAAGCGCTTCTCCAAGGCACAGATTTTGCGCCACCACGAATGGATACACACCGGGGAAAAGCCATTCGAGTGCAAGATCTGCGGCAAGCACTTCCGCCAGGAGACGGCGCTCAAGAAGCACATCAAGACGCACGAGAAGCCGAACAGGAGGCACGTGCCCGAGCGCAGTGCACCCACACAGATCACGTTCCGCAAACTGGAGCCGGATGCCGAGCCGCGGAACTTCGATCAGTACCAGGATCCCGCGGTGGAAAGGGCGGCCGCCACTGCCGAGCTGCTCGCCCATCAGCTGGAGGAGAACGAGGCCAAGCGGAAGGCGGACATCGAGCGGCAGAAGATCGCGGCGGCCGCTTGCGAGCAGCTGACGAAGCTGCAGCAGCAGCAGGAGATCATGAAGGCCACCACCTCGTACGATGGCTACTACGCGCAGAAGGCCCAGGCCGAGGGCACCAGCTTGGATTCGTTGAAGATCGATCATGTCTAG
- Protein Sequence
- MNEGRQYSIHSLCRICLNHLQNDAAYDLYLVPGLSKKLCFCTSLSVEQNDGFPKNLCTLCYTKLNDLHDFQRQCVDSVQKFQDLVASNVFACQSSFDVLDPNVAVQDYQGEEEDHVNYDPLLNHKMELIENEEDVFKMLEHVDKEAEEVENGAKVEREDPDEDLSIKMFDDDASSLESGNDNDHDLDFEPNSSDDDIPLAQRMRGVPAGGTSSSSLASKPKAKRGRPKKIKPPPPADEEEISGSSEDSEDDSEDKPKRKRIPLEERHLHRIIDCHICHQKFKKAIRYEEHMKYHNDLLPFQCKVETCKKGFTTANGLRIHIDHAHTELSEVHACIAEGCGKTFPRVRLLTFHMKKVHGITKAAAPLRDFPCPECDTVFRCPTALKKHMYKHTGEELPYPCNICGKRFVINSALRDHLMRHAGIKNHVCPYCGVGKTTRQEWNAHILTHTKEKKFKCRQCDHASHNKQALSNHVKVVHEKRKDFACQYCGKTFGKSHACKVHERSHTGEKCCECKICGKIFLCEKSLTKHLKTHEKRDLPPAEPHRQQLNIPMPGQMMPGQMPMQMQADGLVQMDPHQMPSEEMLKACGGGSGGSAAVPPKPKNSRRVQRVDISQLAGTAVNPIPSVSVPSWSPQVNFTKKEGQHICPGCGRGFNNIGNMKLHYKIIHEKVKDFACRFCPKRFSKAQILRHHEWIHTGEKPFECKICGKHFRQETALKKHIKTHEKPNRRHVPERSAPTQITFRKLEPDAEPRNFDQYQDPAVERAAATAELLAHQLEENEAKRKADIERQKIAAAACEQLTKLQQQQEIMKATTSYDGYYAQKAQAEGTSLDSLKIDHV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00486750;
- 90% Identity
- iTF_00504861;
- 80% Identity
- -