Dtak000737.1
Basic Information
- Insect
- Drosophila takahashii
- Gene Symbol
- ken1
- Assembly
- GCA_018152695.1
- Location
- JAECXN010000052.1:6765808-6767900[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 8.9 5.5e+02 1.2 0.3 5 16 57 68 56 70 0.85 2 13 2.5e-05 0.0016 18.6 1.1 2 23 173 194 172 194 0.96 3 13 0.0058 0.36 11.2 0.1 1 23 200 225 200 225 0.92 4 13 0.049 3 8.3 0.1 3 23 234 257 232 257 0.93 5 13 0.00072 0.044 14.0 0.5 2 23 270 291 269 291 0.96 6 13 1.3e-05 0.00078 19.6 0.7 1 23 298 320 298 320 0.98 7 13 0.0089 0.55 10.6 0.2 1 23 326 348 326 348 0.98 8 13 0.015 0.92 9.9 4.0 1 23 354 377 354 377 0.97 9 13 0.0099 0.61 10.5 4.0 1 23 383 405 383 405 0.96 10 13 0.00083 0.051 13.8 2.9 2 23 412 433 411 433 0.96 11 13 0.00027 0.017 15.4 1.1 3 23 517 538 515 538 0.95 12 13 0.0029 0.18 12.1 1.1 1 19 544 562 544 566 0.95 13 13 9.2e-07 5.7e-05 23.1 0.8 1 23 572 594 572 594 0.98
Sequence Information
- Coding Sequence
- ATGGGCACCAGGGAGCTCCAGTACTCCGTCCACTCGCTGTGTCGCATCTGCCTTGGCCACCTGGAGCAGGGTGTCGGCCATGATCTTTTCCTGGTTCCAGATTTGGTCAGGAAACTGGTTTCCCTGACTTCATTGGAGGCGGATCAAGGCGACGGTTTCCCCAAGAAGCTATGCACCCAGTGCTTCTCCAGGCTGAACGACCTGCACGATTTCCGGGAACTCTGTGCGGAATCCATCAAGCGTTTCAAGGAAATGGTGGCCAGCAATAGGATTCTGGATTCTGAGGATTCCGAGGCATTGGGAAGGCAGGATCCCCTGCTAAACCACAAAATGGAGCTGATCGAGAACGAAGAGGAGGTCTTCAAGATGCTGAACGGGGACAGGGAACAGGAGGAAGAGGATTCATCCAGTGGAGAAGAAAACGAGAAGGAGGAGGAGCATAAATCAGCGGATGGTTTCTCCAGCGATGATGAGCAGCCCTTGGCCAGGCGGCGGCGCAGGATTCCCAGCCTCATTAGCTGCCCCATCTGCCAGCAGAAGTTCAAGAAGCCCGCGAATTATGAGGAGCACATGAAGCACCACAACGACCTGCTCCCGTTTCAGTGCGAGGAGGAAAGCTGCCGCAAGGGCTTCACCACAGCCGGTGCACTGCGTCTCCATGTGGACTATGCGCACACCAAGAAGGCGGATGAGATTCCCTGCACTGTGGAGGGTTGTAAATTGTTATTTCCCCGTCTCCGCCTGCTGACCATCCACCTGAAAAAGGTTCACAACCAGGCAAGGATCAGTGCACCGCGTTCGGAGCAGCCTTGCGGGGAATGCGGCATGGTCTTCCGCTGCCCGGTGGCCCTGAAGAAGCACATGTACAAGCACACCGGCGCCGAGCTTCCCTTTCCCTGCAACATCTGCGGCAAGGGCTTCCACATCAATAGTGCTTTGAAGAATCATCTTCTGCGGCACGCGGGCATCAAGAACTACGTGTGTCCGTACTGCGGAGTGGGCAAGACCACCCGGCAGGAGTGGAGCAAGCACCTGCTGACCCACACGCAGGAGAAGCAGTTCAAGTGCCACATCTGCGACCATGCCACCCACACGAAGCGGGCTCTGGATAGCCACGTGAAGATTGTGCACGAGAAGATCCGCAACTTTGCCTGCCAGTATTGTGGAAAGACCTTTGGAAAGTCGCACGCCTGCAAAATCCACGAGATGACGCACACCGGGGAGAAGCGCTGCGAGTGCAAGGTCTGTGGCAAAAAGTTCCTGTACACGGAAAGCCTCACGAAGCACCTGAAGATCCACGAAAAGAGCGTTGAGAGGGCTTTGGAAACCTATAGACAGAGGCAGGGAGATGGTGAGATGGATGCGGATCAGCTGCTTAAAGTGTGCGCCGAATCGGTGGCCACCATACCCAAGGATCCGCGCCGCGTGGAGCGCGTTGATCTGGCCCAACTGGCCGGAACCGTGGTGAATCCCATACCCACCGTCCAGCTGCCGCCCAGCGAAGCGCCCGCGCGCTCAAAGTTTGTCCAGAAGGAGGGCATGCACCTGTGTCCCGGCTGCAGCCAGGGATTCAACAATCTGGGCAACATGAAGCGCCACTACAAGAGCGTCCACGAGAAGGTCAAGGACTTTGAGTGCCGCTTCTGCTCGCGTCGCTTCGCCAACTCGCAGTCGCTGAAGCAGCACGAGTGGATACACACCGGCGAAAAGCCGTACGAGTGCAAGGTTTGTGGCACTCACTTCCGCCAGGAAGCTGCCCTCATCCGCCACCAGAAGGTCCACGACGAGAAGCCGCCAAAGCCTCCCAGGCCGCCCAAGGAAATCAGCGAAAGGGCGCGACAGAAGGCGATGCAGAAGAGTGAGCGAAGACGAAAAGTGGAGGAACTGCGGCAGGAAATCGCCGAGGCCGCCAAGGAGGAGCTCAAGGATTTGGAGAACCAACGGGCTCTGGAGAAGCAGCAGAACAGCTACGAACAGTATCAAGCAGCGGCAGCTGGCCAGACTAATCCCGAGTCCAATCTTGATGAGAAATTAGCGTAA
- Protein Sequence
- MGTRELQYSVHSLCRICLGHLEQGVGHDLFLVPDLVRKLVSLTSLEADQGDGFPKKLCTQCFSRLNDLHDFRELCAESIKRFKEMVASNRILDSEDSEALGRQDPLLNHKMELIENEEEVFKMLNGDREQEEEDSSSGEENEKEEEHKSADGFSSDDEQPLARRRRRIPSLISCPICQQKFKKPANYEEHMKHHNDLLPFQCEEESCRKGFTTAGALRLHVDYAHTKKADEIPCTVEGCKLLFPRLRLLTIHLKKVHNQARISAPRSEQPCGECGMVFRCPVALKKHMYKHTGAELPFPCNICGKGFHINSALKNHLLRHAGIKNYVCPYCGVGKTTRQEWSKHLLTHTQEKQFKCHICDHATHTKRALDSHVKIVHEKIRNFACQYCGKTFGKSHACKIHEMTHTGEKRCECKVCGKKFLYTESLTKHLKIHEKSVERALETYRQRQGDGEMDADQLLKVCAESVATIPKDPRRVERVDLAQLAGTVVNPIPTVQLPPSEAPARSKFVQKEGMHLCPGCSQGFNNLGNMKRHYKSVHEKVKDFECRFCSRRFANSQSLKQHEWIHTGEKPYECKVCGTHFRQEAALIRHQKVHDEKPPKPPRPPKEISERARQKAMQKSERRRKVEELRQEIAEAAKEELKDLENQRALEKQQNSYEQYQAAAAGQTNPESNLDEKLA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00548237;
- 90% Identity
- -
- 80% Identity
- -