Dtak014798.1
Basic Information
- Insect
- Drosophila takahashii
- Gene Symbol
- -
- Assembly
- GCA_018152695.1
- Location
- JAECXN010000001.1:7389664-7394036[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 9.7 6e+02 1.1 0.2 1 20 86 105 86 107 0.90 2 13 0.0041 0.25 11.7 3.9 2 23 183 205 182 205 0.95 3 13 3.8e-06 0.00023 21.2 5.5 2 23 212 234 211 234 0.96 4 13 0.01 0.62 10.4 9.0 2 23 470 491 470 491 0.97 5 13 1.8e-06 0.00011 22.2 2.9 1 23 497 520 497 520 0.95 6 13 0.0005 0.031 14.5 0.4 1 23 525 548 525 548 0.93 7 13 5.9e-05 0.0037 17.4 5.5 1 23 566 588 566 588 0.96 8 13 7.8e-05 0.0048 17.1 0.7 1 23 593 615 593 615 0.98 9 13 3.1e-05 0.0019 18.3 1.7 1 23 621 643 621 643 0.95 10 13 0.00011 0.0065 16.7 0.8 1 23 649 671 649 671 0.98 11 13 3.2e-07 2e-05 24.6 2.7 3 23 679 699 678 699 0.99 12 13 2.4e-08 1.5e-06 28.1 1.1 1 23 705 727 705 727 0.99 13 13 0.36 22 5.5 3.4 1 19 732 750 732 755 0.89
Sequence Information
- Coding Sequence
- ATGGAGCAGCTGGAGCCGGTTTCGGTATCGGTTACGGGCCAGGAGCAGCAGCAGGAGCCGCCCAGCGAACCGGCGGGCAGCCTAAACACCTTGGATGCGCAGCGCGTCTGTCGCGTTTGCCTGAAGGACGCCTCGCTGGACGGCGAGGTGCACTTCATCTTCAGCGAGGCGCCCGTCGAGGAGGACGCCAATCTGGCCCGCATCCTGGACGAGTGCACCCAGCACCGGTGCCAGCGGCACGACGGGATGCCCCCGCATATGTGCGCCACCTGCGTGGAGGCCGCGCGCCAAGCCTATCGGTTTAAGAGGCACGCGGAGCGCTCCTACTGCTCGCTGGTTGCTCTGCTGGGCCGCTCCCCCCAGCTGAAGGTGCGCGCCATCGAGGCGGCCAGCCAAACGGACCAGGTGGCCCTGATGCCCTGCGAAATGTGCCACGATCAGTTCCTCAACAGCCTGGAGCTGCGATTGCATCGCAACCAGGTGCATAGGACGACTAAGGAGGGCACCACTGGCCCGGGGACAGATGGCCAACCTGCCGAGGAGCTCAAGTGCAAATTTTGCCCCCAGCATTTCCCGCATCTCCGGCAGCTGCAGAGCCATTTGGCGCGCAGCCACGAGCAAACTGCCCGGCTGCAGTGCGCCCACTGCCAGCGCACCTTTAGCCGGCGGGATCACCTGCTGCGGCACATGCGCAACCAGCACCGAGACGTGGAGGAGGATCTGCTGCGCACCTGGCCGCCGGCCGATGAGAGCACCATGCACAGCGACGGCGGCGATGAGCTGGTCTCCGCCGAGGTGCTGCTGAACGAGGGGCAGGACGACGACGAGGAGGATGATGACGACGACGGGAGAGATGGCGTTGGCGAGGCCTTCCAGTGCAATACGAATCCCATTTCCAGCAACGACGAGGAGGAGGAGGACGCGGTGGCCAATCAGACGCTCTGGCTGCACATCAAGCCGGAGCCCTGCCTGGAGGCGGAGGAGGTGGACTTGGCCATGCAGCTGAAGCTGGAGAAGAAGCGTCGGAGGCGCGAGAAGGCGGAGGCCCAGGCGGAGGGCTCCTTGGAGCGGGCTGTGAAGGATGAACCCATTGCCATTGGCGACGCCCAGTTCAGCATCAAGGAGGAGAACCAGCTGGTGGGCAGCGAGGACGAGGCTCCCATGGGCGTGGAGGACTTTATGAAGCTGCACGTGAGCGGAGAATTAACTCTCAGTGACGAGGATCGGTTCGATGACTTCGTCGACGAGGATAGCGACCTGGATGACGATGAGGAGGACGACGAGGACGATGGGGAAGATGGGGAATTCCGGCTCAAGCAGGAGCCTTTGGATGGCGACAAACCCGTGAAGAAATCCAAATCGGGCAGACGTCGTCGCCGCAACAAGGGCGAGCCGAATCCCGAGAACCGCTGCGAGGTTTGCCAGCGGACCTTCTCGCGCCACTGCCACCTGCTGCGCCACAAGCTCTCGCATCTGGAGAAGAAGCCCCACAACTGCCCGCACTGCCCCAAGGCGTTTGCGCGCAGCGATCACCTCAAGGCGCATGTGCAGAGCCTGCACAGCAACAAGGAGCACAAGTGTGCGATCTGCGAGGCGGCCTTCTCCCGGCTGGACGCTTTGGAGCGTCACAAGGTTAGCAAGCACAACGGCGAGGGCCTCGAGCCGGGCAGCGAACTGAAGCTACAGCTGGCTGAGCACACGTGCGAGTACTGCTCGAAGAGATTCTCCAGCAAGACCTACCTGCGCAAGCACACGCTGCTGCATACGGACTTCCTGTACGCCTGCAAGACCTGCGAGGAGACTTTCCGCGAGCGAGCGCAGCTCAGGGAGCACGAGAAAACGCACACCGGCCAGCGCAACTTCCTCTGCTGCATCTGCGGCGACAGCTTCGCCCGGAACGACTACCTCCGCGTGCACATGCGGCGGCACAACGGCGAGAAGCCCTACAAGTGCCGCTTCTGTGTGAAGGCCTTTCCCCGCGCCACCGATCTCAAGGTCCACGAGCGTTACCACACGGGCACCAAGCCGAATCTGTGCAATACTTGCGGCAAGAGCTTCCATCGGGCCTACAACCTGACCATCCACATGCGCACCCACACCGGCGAGCGGCCGTACAAGTGCGACCAGTGCCCCAAGAGCTTCACGCAGAGCAACGACCTCAAGGCGCACATTCGGCGGCATACGGGCGAGCGTTACAAGTGTCCGCACTGCGACGCCTACTTCCTGCAGCTGTACAATATGCGCAATCACTGTTTGAGTGCCCACAACAAGCACATCGAGACGAAGACGGGTCGTTTGCAGCGAACAGGCCTTCTAGACGACGGTGGCCAGTCGCATTTGACCACGGTGGTCATGCCGCCGGCAAGGTATCCACATGAACTGGATCCCCAGATGGCCGCCGCCGCTGCAGGTGCAGCTGGAGCTGCCGGAGGGGCTGAGAGCTCCTCCTCGACCACCGTCATCCACTCACCGGGAACGTACAATGCCCCAATGGCGCCGGGATCAGCGTCCGCTGCTCCAGCCAGCAGCCTCGATGGAGCCAGCTTCGCACCCACGGCATCGGCTCCCTTTGGCGGCTTTAATTTTCCGCCAGTCGTAATGGCGCATCTCATGTACAACCACGGAGGAGGCAGCCAGCACAGCCAGAGCGGCAGCGACACGGGCAAATAG
- Protein Sequence
- MEQLEPVSVSVTGQEQQQEPPSEPAGSLNTLDAQRVCRVCLKDASLDGEVHFIFSEAPVEEDANLARILDECTQHRCQRHDGMPPHMCATCVEAARQAYRFKRHAERSYCSLVALLGRSPQLKVRAIEAASQTDQVALMPCEMCHDQFLNSLELRLHRNQVHRTTKEGTTGPGTDGQPAEELKCKFCPQHFPHLRQLQSHLARSHEQTARLQCAHCQRTFSRRDHLLRHMRNQHRDVEEDLLRTWPPADESTMHSDGGDELVSAEVLLNEGQDDDEEDDDDDGRDGVGEAFQCNTNPISSNDEEEEDAVANQTLWLHIKPEPCLEAEEVDLAMQLKLEKKRRRREKAEAQAEGSLERAVKDEPIAIGDAQFSIKEENQLVGSEDEAPMGVEDFMKLHVSGELTLSDEDRFDDFVDEDSDLDDDEEDDEDDGEDGEFRLKQEPLDGDKPVKKSKSGRRRRRNKGEPNPENRCEVCQRTFSRHCHLLRHKLSHLEKKPHNCPHCPKAFARSDHLKAHVQSLHSNKEHKCAICEAAFSRLDALERHKVSKHNGEGLEPGSELKLQLAEHTCEYCSKRFSSKTYLRKHTLLHTDFLYACKTCEETFRERAQLREHEKTHTGQRNFLCCICGDSFARNDYLRVHMRRHNGEKPYKCRFCVKAFPRATDLKVHERYHTGTKPNLCNTCGKSFHRAYNLTIHMRTHTGERPYKCDQCPKSFTQSNDLKAHIRRHTGERYKCPHCDAYFLQLYNMRNHCLSAHNKHIETKTGRLQRTGLLDDGGQSHLTTVVMPPARYPHELDPQMAAAAAGAAGAAGGAESSSSTTVIHSPGTYNAPMAPGSASAAPASSLDGASFAPTASAPFGGFNFPPVVMAHLMYNHGGGSQHSQSGSDTGK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00504826;
- 90% Identity
- iTF_00536918;
- 80% Identity
- -