Dsuz014827.1
Basic Information
- Insect
- Drosophila suzukii
- Gene Symbol
- Aef1_2
- Assembly
- GCA_013340165.1
- Location
- WWNF01000002.1:2131426-2137937[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.0096 77 3.4 0.1 21 46 200 225 196 227 0.88 2 4 1.6e-05 0.13 12.3 0.0 21 52 228 259 224 261 0.89 3 4 0.019 1.6e+02 2.4 0.1 21 48 256 283 254 287 0.85 4 4 5.7e-05 0.46 10.5 0.1 21 47 284 310 282 317 0.88
Sequence Information
- Coding Sequence
- ATGATGCATATCAAGAGCCTGCCCCATGCCCATGCCGCTGCCACTGCGATGAGCAGCAACTGCGACATAGTCATAGTGGCCGCCCAGCCCCAAACCACCATAGCGAATAATAACAATGAGACGGTCACCCAGGCCACTCATCCCCATCCCGCTCACATGGCGGCggtccagcagcaacagcagcagcagcagcagcaacaacaacaacagcagcagcagcagcagcaacaacaacatcatcagcagcagcagcaacaacagcagcagtcgAGCGGTCCTCCCTCCTTGCCGCCCCCGCCCACGGAAATCCCCTTTCCCCTCCAGATGCACCTGAGCGGGATCTCGGCGGAGGCGCACAGTGCCGCCCAAGCAGCGGCCATGGCAGCTGCCCAGGCTGCAGCAGCTCAGGCCGCAGCGGCGGAGCAACAACAGCCGGCAGTGCCGCCTCCACCGCCACCACACCTGACGCACCTGACCACGCACAGTCCAACGACGATCCCCAGCGATCATTACCTCGCCAACGGACATGGCGAACATCCCGGCGAGGCCAGTGCCCCCGGgggaggcggaggcggaggaggaggagcagtcCGCGAGCCGGAGAAACCCTTCCACTGCACCGTCTGCGATCGTCGCTTCAGGCAGCTGAGCACACTGACCAACCACGTGAAGATCCACACTGGCGAGAAGCCCTACAAATGCAACGTTTGTGATAAGACCTTCCGTCAATCGTCGACGCTGACGAACCATTTGAAGATCCATACGGGCGAGAAGCCCTACAACTGCAACTACTGTCCCAAGCATTTCCGTCAGCTGAGCACTCTGGCCAACCATGTGAAGATCCACACGGGTGAAAAGCCGTTTGAGTGCGTCATCTGCAAGAAGCAGTTCCGGCAGTCCAGCACACTCAACAACCACATAAAGATCCACGTCATGGACAAGGTCTACGTTCCTGTTAAGATCAaaacggaggaggaggaagggTGA
- Protein Sequence
- MMHIKSLPHAHAAATAMSSNCDIVIVAAQPQTTIANNNNETVTQATHPHPAHMAAVQQQQQQQQQQQQQQQQQQQQQQHHQQQQQQQQQSSGPPSLPPPPTEIPFPLQMHLSGISAEAHSAAQAAAMAAAQAAAAQAAAAEQQQPAVPPPPPPHLTHLTTHSPTTIPSDHYLANGHGEHPGEASAPGGGGGGGGGAVREPEKPFHCTVCDRRFRQLSTLTNHVKIHTGEKPYKCNVCDKTFRQSSTLTNHLKIHTGEKPYNCNYCPKHFRQLSTLANHVKIHTGEKPFECVICKKQFRQSSTLNNHIKIHVMDKVYVPVKIKTEEEEG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00613017;
- 90% Identity
- iTF_00548305;
- 80% Identity
- iTF_00605079;