Dsuz000066.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Drosophila suzukii
Gene Symbol
prg
Assembly
GCA_013340165.1
Location
WWNF01000001.1:21296387-21298574[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 9 0.13 8.6 6.9 0.4 1 23 209 232 209 232 0.92
2 9 0.01 0.7 10.3 1.4 1 23 238 261 238 261 0.97
3 9 3.3e-06 0.00022 21.3 1.6 1 23 267 289 267 289 0.98
4 9 4.7e-09 3.2e-07 30.3 2.5 1 23 295 317 295 317 0.99
5 9 3e-05 0.002 18.3 0.6 1 23 323 345 323 345 0.98
6 9 2.8e-06 0.00019 21.6 0.7 1 23 351 373 351 373 0.98
7 9 2.2e-05 0.0015 18.8 1.3 1 23 421 443 421 443 0.96
8 9 0.00026 0.018 15.4 1.5 1 23 448 471 448 471 0.91
9 9 0.16 11 6.6 1.9 1 23 475 497 475 497 0.98

Sequence Information

Coding Sequence
ATGCATATACCGGAGATCACCGAAGTGACCCAGGAACGGGAGGTGTGCACTTGCCGTCTGTGCCACCGCGAGACGGATGCCAACTCGCCGAATATTTTTGAGAGCTCGGTGGAGTGCTGCAAAGATGTGTCCATTGCGGAGGTTTCCCAGGCTCTGTGGAGCGTTCAGTATGATCGCCACGAGTTTCTGTCCGAGCTCATATGCCCGGAGTGCCTGGAGATCCTGGAGGATGCCTTTGAGCAAAGGAGAGGGATGCAGGAACGGGAGAAGGCGCTGCAGGAGCAGCTCAAGGACCTGATCAGGGAGGATGCCAAGTACCGGCCCGGTCTCAATGGCAATCCAGGAGAGTTTTTGCCCGAGGAGGGCTGCATCATCGTGGATGTCGACCCGGAAAAGCTGGCGGAGACCAGTGAAGATGAGTTTGCAATCGGCTCCGACGGAGAATACGAAAACTACGAGgacgacgatgatgaggaggaggaagacTTTGACGAGGAAGATGAGGAAGAAGGTCAGAATGGCGAGGATGTGGACATGCCGCTGGGCATGGATGCGGCCCAGATGGCTGCCCAAAAGGCGGTTGCGGCAGACACCAACTCCGCGACGGCACGGCCAAAGCGCGCCTTCCTCTGTCAGTACTGCGATCTGGGCTTCACCCTGCCCGCCGAATGTCAGGAGCACGAACGAAGCGCCCACGACCCTAACGCACCGTTCTGCTGCACCTACTGCAACCTCAAGATGGTCACCCGGCCCGCTTTGATTTCGCACATTAAGACACTGCACGATCCGGATCGTCCGTATGTGTGCGCGCACTGCAGGAAGGGATTCGTGCGTCGCTCCGATCTCAAGAAGCACACAATTGTCCATACGGGCGTGCGGCCATATACCTGCAACGTGTGCTCCAAGAGCTTCTCGAGAAACACCAATCTGACCAAGCACATGCGCATCCACAGCGGCGTCAAGCCTTTCGTGTGCCAGCAGTGCCCGCGATCGTTCCAGACGGCAGTAGAGATGATGAGGCACACGCGTTCCCACGGCGAGGTGAAGGCTTTTCAGTGTGGCCGCTGTCCTTACTCGTTTTCGCGCAGGGATAAATTGCTGGCCCACCAGCAAGTCCACACTAGACGGGAtgtggagcagcagcagcagcaaatggGACTACTTCCGCCATTGGAGGGCGATCTGGCgcatctgcagcagcagcaggctgCTTTCCAGGCGAAGCAAAGGGCTCAGTCACAATCTAAAAACTCTCGCAATCATCGATGCGATATTTGCGATCGTGCTTTTCAGCGGGAGCGCGACCTGCAACGCCATCGAGCCCTTCACATGGACTCGCTGTTCGCCTGCAAGACTTGTAATCAAGGTTTCAACCGACGCGAGCAACTGCATCGCCATGAACTGGAGGCCCATGGACCCAGCTTCACCTGTGGCATCTGCTGCATCAGCTTCCTGCATCAAATTGAGCTGGAGAATCACCTTAAGGTCCATCAGCTTCAGCACAAGATGGCGCAGCGGGCCCAGGAGGCTTCCATTTTGCCTCTCAAAATAGCCGAGCTGGCGCCAGTGGCCACGATGGCTCCGGTGGTCCAGCCACCCCCACAAATGCGACCCACGGCCGCTGAACTCTCGTTCTACAGCAACATGATTCCCACTATGAATCTGGGCTTCTACAGCGAGACTCGACCCGAAGAGTAG
Protein Sequence
MHIPEITEVTQEREVCTCRLCHRETDANSPNIFESSVECCKDVSIAEVSQALWSVQYDRHEFLSELICPECLEILEDAFEQRRGMQEREKALQEQLKDLIREDAKYRPGLNGNPGEFLPEEGCIIVDVDPEKLAETSEDEFAIGSDGEYENYEDDDDEEEEDFDEEDEEEGQNGEDVDMPLGMDAAQMAAQKAVAADTNSATARPKRAFLCQYCDLGFTLPAECQEHERSAHDPNAPFCCTYCNLKMVTRPALISHIKTLHDPDRPYVCAHCRKGFVRRSDLKKHTIVHTGVRPYTCNVCSKSFSRNTNLTKHMRIHSGVKPFVCQQCPRSFQTAVEMMRHTRSHGEVKAFQCGRCPYSFSRRDKLLAHQQVHTRRDVEQQQQQMGLLPPLEGDLAHLQQQQAAFQAKQRAQSQSKNSRNHRCDICDRAFQRERDLQRHRALHMDSLFACKTCNQGFNRREQLHRHELEAHGPSFTCGICCISFLHQIELENHLKVHQLQHKMAQRAQEASILPLKIAELAPVATMAPVVQPPPQMRPTAAELSFYSNMIPTMNLGFYSETRPEE