Dsuz000057.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Drosophila suzukii
Gene Symbol
-
Assembly
GCA_013340165.1
Location
WWNF01000001.1:18204962-18209228[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.00096 0.065 13.6 5.5 1 23 174 196 174 196 0.96
2 16 2.9e-05 0.002 18.3 5.0 3 23 205 225 203 225 0.97
3 16 5.8e-08 3.9e-06 26.9 2.1 1 23 231 253 231 253 0.99
4 16 6.6e-05 0.0045 17.2 3.8 1 23 259 281 259 281 0.96
5 16 2.4e-07 1.6e-05 24.9 2.2 1 23 287 309 287 309 0.99
6 16 8.8e-05 0.0059 16.8 0.8 1 23 333 355 333 355 0.98
7 16 0.00023 0.015 15.6 5.0 1 23 409 431 409 431 0.98
8 16 2.4e-06 0.00016 21.8 3.5 2 23 437 458 436 458 0.98
9 16 1.6e-06 0.00011 22.3 0.3 1 23 464 486 464 486 0.97
10 16 3.4e-07 2.3e-05 24.4 0.8 1 23 492 514 492 514 0.99
11 16 1e-05 0.0007 19.8 2.0 3 23 522 543 520 543 0.97
12 16 3.4e-05 0.0023 18.1 2.6 1 23 556 578 556 578 0.98
13 16 0.00079 0.054 13.8 0.1 1 23 584 607 584 607 0.96
14 16 0.00015 0.01 16.1 4.0 1 23 621 643 621 643 0.96
15 16 7.4e-06 0.0005 20.2 1.6 2 23 650 671 649 671 0.97
16 16 7.1e-06 0.00048 20.3 2.0 3 23 679 700 677 700 0.96

Sequence Information

Coding Sequence
ATGAAAATGAAGGAAAAATGCAGGGTTTGCTTGCTGAAGCACCAGAACATGGTGCACATATTTGAGGGGCAAAATACACAGGATCTCGAAATATCCTTAGCGAATATGATTTCGGATTCAACAGGCTTTCCAGTGGCCAAAGGGGACCTTCTTCCGGAATTCATTTGTGTGCTTTGCCTGCAGGATATGACAAGCACTTTCAGGGCCAGGAAAACCTACGAGTCCAACCAGCAGCTCGTCTGTCAAATCAAGGAGGAAATCATAGAAGAGGATTTCGTGGAGGATGAGGATTACAATGGACAGGACTGCGAGTCCTATTATGAAGAGGAAGACGATACCTTTGCGTGCCACGTGAAAAACGAACCCTTAGAAGAAGACTTTGCAGAGCAAGACATGACCAAAACTTCAGACAGGCCAATAGACCATTACAATGGAGAATGGAATGAAGAAAACACCGAAGTGGAAGCTAGTAATAATACAAAGGATATTGATTATGACCCCACCAAAGAAGAACTTCCATTCAAATGTGATCGTTGTCCCAAGAGATTTCGGAGCAAGTATTTTCTTAATCTCCACAGACACGATCACAAGAAAAAACAGGCACCGCAGCACTGTGACCACTGCTCCAAAACCTTTCCTACTTCAGCACAAATGAGAAAGCATATGCTGACTCACACCGGCATAAGGCCATATAAATGTACGCAGTGTCCCAaatccttttttaataattccaaTCTTCAATCACACCTCCGTATTCATACTGGGGAGCGACCATTCAAGTGCTCTAAATGTCCAAAAACGTTTATACAAAGAACCCATCTTGTTAATCACGACCGCACTCACACTGGGGAACGTCCCTTCAAGTGTTCCGAATGCCAAAAGACTTTTATACAACCTGCTAATCTTCATTCACACATCAAGACTCACTGCAAGCAAATATCCAGACCTCGGAGAACCACAAGAGCCAGGAGCCAAACTCTGACAGAGGAGCCAATTTTCAATTGCTCCCGTTGTCCGCTGTCTTTTGCGAACGAAGATGGTCTTCTTAATCATATGCACACTCACAACGCCTTGTTTGAGGAAGAAGTTTGCCAGATGTCCGACAACGAAACCGATCCATTCCATGATATTGAAGTGGATATATTTGAGGACAATGATAAGGATGCTAAGCTAGAAAATTCGGAGGACACAGTAGACAACAGCAATGATGACCAAGCTCCTGTGTTTAGATGTCCTCACTGTCCAAAGGTGTGCTGGCGCAGTCATGATCTTAAGGCCCACTTAAGAAATCATTATGAGGAACCAAAAACGTGTCCCCACTGCCCGAAAACATTCAGTATCGTATCAACCTTCAAGAGACATATGCGGACTCacacaaaggaaaaaaagttTGCGTGCGACTATTGCCCAAAGGTCTTCAGAAATCCGGCGCAGATTAAAGAGCACACTCGAACTCACACCGGAGAACGTCCTTATCAATGCCCGGATTGCCTGCAGTCATTTGCCTATAATTCGGTTCTGAAAAAACACATGCGAACTCACACTGGCGAAAGGCCGTTCTGGTGTAACGAATGCAACAAATCGTATGTACAATTGGATCATCTTAAGCAACACATGCTTAGGAACCACACAGAACAAATCTCCACTAAAAAAGATGCTCCACAGCACAAATGTAGCGAGTGCTTGAAGACTTATCAAAACCCAAGATCGCTTAGGAGACACATGTTGATTCACACCAggaaaaaagaatataattgCACCGATTGCTCAGAGTCCTTTATAGGAAAAGAAGCTTATACAAATCACGTATTGATTGAACACACCAAAAAAGAATTCGTCAGTAAGGCTCAGGAAAACACGCATAATTGCCTACTCTGCCCAAAAACGTTTTCAAATGATCACAATCTTAAAGTCCATACTCTCACACACTGTGTGAAAAAGCGCCTTACATGCTCACATTGTCCGGAAACATTTGCGAACAAACAGACTCTTAGAATGCACCTACGCATTCACACGGGGGAAAAGCCCTATGGCTGTAcaaagtgcaaaaaaactttttcaagaAGCGACTACCTTGTCAAGCACATCAGTAGACGCCATGAGAAAAAGAATAAACCTTCGGAACCAGAACCACCCATATGCGAGATTACCATAAAGGAGGAGAATCTCAGTTTGCTCGAAGAACTTTAA
Protein Sequence
MKMKEKCRVCLLKHQNMVHIFEGQNTQDLEISLANMISDSTGFPVAKGDLLPEFICVLCLQDMTSTFRARKTYESNQQLVCQIKEEIIEEDFVEDEDYNGQDCESYYEEEDDTFACHVKNEPLEEDFAEQDMTKTSDRPIDHYNGEWNEENTEVEASNNTKDIDYDPTKEELPFKCDRCPKRFRSKYFLNLHRHDHKKKQAPQHCDHCSKTFPTSAQMRKHMLTHTGIRPYKCTQCPKSFFNNSNLQSHLRIHTGERPFKCSKCPKTFIQRTHLVNHDRTHTGERPFKCSECQKTFIQPANLHSHIKTHCKQISRPRRTTRARSQTLTEEPIFNCSRCPLSFANEDGLLNHMHTHNALFEEEVCQMSDNETDPFHDIEVDIFEDNDKDAKLENSEDTVDNSNDDQAPVFRCPHCPKVCWRSHDLKAHLRNHYEEPKTCPHCPKTFSIVSTFKRHMRTHTKEKKFACDYCPKVFRNPAQIKEHTRTHTGERPYQCPDCLQSFAYNSVLKKHMRTHTGERPFWCNECNKSYVQLDHLKQHMLRNHTEQISTKKDAPQHKCSECLKTYQNPRSLRRHMLIHTRKKEYNCTDCSESFIGKEAYTNHVLIEHTKKEFVSKAQENTHNCLLCPKTFSNDHNLKVHTLTHCVKKRLTCSHCPETFANKQTLRMHLRIHTGEKPYGCTKCKKTFSRSDYLVKHISRRHEKKNKPSEPEPPICEITIKEENLSLLEEL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00486697;
90% Identity
iTF_00602737;
80% Identity
-