Dsuc009145.1
Basic Information
- Insect
- Drosophila sucinea
- Gene Symbol
- bab1
- Assembly
- GCA_018150745.1
- Location
- JAECWP010000127.1:5389894-5391065[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.7e-18 6.1e-15 54.7 0.0 1 43 55 98 55 100 0.95 2 2 1.8 4e+03 -2.4 0.4 7 18 182 192 178 192 0.82
Sequence Information
- Coding Sequence
- ATGATGGAGAATTCGCATGCCTGGATGGGAGCAACCGGATCCACGCTGGCAGCAGATAGCTATCAATATCAATTGCAATCGATGTGGCAAAAATGCTGGAACACCAATCAGAATCTAATGCATCATATGCGTTTCCGTGAGCGTGGACCATTGAAATCGTGGCGTCCCGAAACCATGGCCGAGGCCATATTCAGTGTCCTCAAGGAGGGTCTATCGCTATCGCAGGCGGCACGTAAATACGATATACCATATCCCACCTTTGTTCTATATGCGAATCGTGTCCACAATATGCTGGGGCCATCCATCGATGGTGGTCCCGATCTGAGGCCCAAGGGCAGGGGCAGGCCGCAACGCATACTGCTCGGCATTTGGCCCGATGAGCATATCAAGGGTGTGATCAAGACTGTGGTATTCCGAGATGCCACCAAAGAGATGAAGGATGACAGCTCTCTGGGATTGGGTGGTCATATGCCGCCCTATGGTCGTCATTCGCCCGTATTTCCCTTGCAGGACATGAGCTTGAGCTATCCGGGAGCTGCTAGTGCCGCAGCATTAGCTTGTTCCAATGGCATGGGCGGCGGCGGAGCTGGCGTTGGTGTGGGACGGGACCGCCACCAGGGCTCTTCAATTTGCCACCACATCTGGCTGGCAGTGGTCCGGTGTTGGGCAGAGGGAGCAGCATATCGCCAGCATTGA
- Protein Sequence
- MMENSHAWMGATGSTLAADSYQYQLQSMWQKCWNTNQNLMHHMRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSIDGGPDLRPKGRGRPQRILLGIWPDEHIKGVIKTVVFRDATKEMKDDSSLGLGGHMPPYGRHSPVFPLQDMSLSYPGAASAAALACSNGMGGGGAGVGVGRDRHQGSSICHHIWLAVVRCWAEGAAYRQH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00590892;
- 90% Identity
- iTF_00590892;
- 80% Identity
- -