Dsub011818.1
Basic Information
- Insect
- Drosophila subsilvestris
- Gene Symbol
- -
- Assembly
- GCA_035043285.1
- Location
- JAWNNB010001746.1:8651179-8657268[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.011 0.82 10.4 0.3 1 23 1320 1343 1320 1343 0.95 2 13 8.1 5.8e+02 1.4 0.2 1 23 1512 1534 1512 1534 0.91 3 13 0.00018 0.013 16.0 2.7 2 23 1537 1558 1537 1558 0.97 4 13 7e-05 0.005 17.3 0.2 3 23 1566 1586 1564 1586 0.98 5 13 5.8e-07 4.2e-05 23.9 4.1 2 23 1593 1614 1592 1614 0.97 6 13 5.5 4e+02 1.9 0.4 5 23 1627 1645 1625 1645 0.96 7 13 1.4 98 3.8 5.4 3 23 1652 1673 1650 1673 0.93 8 13 0.15 10 6.9 0.2 2 23 1684 1704 1683 1704 0.96 9 13 5.6e-05 0.004 17.6 0.4 1 19 1710 1728 1710 1732 0.95 10 13 3.5e-05 0.0025 18.3 0.4 1 23 1740 1762 1740 1762 0.98 11 13 0.0001 0.0075 16.8 7.6 1 23 1768 1790 1768 1791 0.96 12 13 0.00022 0.016 15.7 6.5 1 23 1796 1818 1796 1818 0.98 13 13 0.0027 0.19 12.3 6.1 1 23 1824 1846 1824 1847 0.96
Sequence Information
- Coding Sequence
- ATGGTCGACAGCGTGCAGTGCCCCGTGTGCACCTTGTACCTGCATGCGGGTATGAATCTCTCCGACCATCTGGAGACTCATCCGAAGGAGCAGGTCATCAAGGCGCTGGTGCAGATGACAATTGTGGGCAACACTGGCATGGGTAATGCCCTGGCGGCGGCCATGCTGGGCGATGGCTCTTCGAAAGCAGCAGGAGGTGCAGATGCCGGTGGCTCGGAAGACACCGCCGCCTCCTCGGCATCGTTATCATCTGCGGCTGATGTCAAACCAGTTGTTGTGGCCGCCAGCTCATCGGCAGCAAAACCCATAACATCAGCCTCTAATGCATCCACAGCGTCcctgcagccgccgccactttcctcctcctcagcgagcagcagcaacagcagcaaattgAGTAATCCACCGATGAAAGCACTGAAATGCGCACCGCCCACGACTGAGGCGCGAGCCAACAACACATCCGCACCCACCACAAACAGCGCAATGACCGCACTGTACCAGCCACCGCTGGTCACCACGGACTATCGCTACActaatcagcagcagcagcagcaacaacagcagcagccgggcTTTCCGCGTGGTACCAGCACCGCCACAGCGACCGCCACTCTGGTGATACCACAGGTGCCACATCAGCACTTTCTCACCAGCAGccacccgcagcagcagcagctgcagcagcagcagacccactttgcccatcagcagcagcagcagcatcctggCCTGAAGTTTACCTATGCCACCACGCTGCCGCCTCCTCCGCCGCTGCAGcTCTTtacgcagcaacagcagcagcagcagacagtgGCGCAACCGCACCAGAAACCTCCTCCCGCCTATGGAGCCGCCATCAGTCAAATACGATCTCAGCACAACCAAAacaagcagcaacatcagcagcagcaccagcaacagcagcaccagcagcaacatgtgACCGTTCATCATAACGTTACCCTGGCAccaccgacgacgacgaccccaacagcagcagcagcagcagcaggtggaggCAAGCACAGCGGCAAAGCACACACGGAAGTATTCCTGAATCCCCCACCACCGCCGATGCCACCGCAGGCGCATgcgcagcatcagcagaaccagcatcatcaccaccagcagcatcagcagcaccagcaacagcagcaacagcagcagcaggcacagcagTCATCGATGCCAGTGGCCCTTACAACATCCGCCCccagacagcaacagcagcagcaggcggtgaCATTGCAGACTTACGGATCGAGTGCAGGCAgctgctcctcttcctcctcgaCGGCTGGTCGAGGGAGCCGCCAGACCAACTCTCCCTTTGGCGCATTGCTCaatgctgcggcggctgctgccagCTCTTCGCCCTCATCTGCGTCCGCATCTGCCGCCTCGGTGCTGCGCTATGCAGAGTCGCCAGTGGCGCATTATCTCGAGCGGGATAACGGGGACTTTATTGTCCAGGAGACGCCCAAGCACATTGTGGAGTGCGTTGAAAAGGAGGACGGAGAGTTCTCCGTGATCGAGCGCATTTACCAGTCGCCTCCGAGTGTTCTCCACAtacacgacgacgacgaagacgacgacgatgacgatgatgatgaggaggatgaggagaaCGAGGCGGCACTGCAGGACGAGCACGATCACGTAGAGGATGGGGACGATGAGCGGGACGAGAACAGCCACTGCCGCAACTTGAccaaaacaacgaaaaagtcGCGCAAGACAAAGCCCAAGCGAACCTCCAAGAAAACGCCGCGGCAACATCTATCGGACGAGGAGTTCATGAGCATCAGCAGCGGGTGCGAGAGCGACTCGGAGCCCGAGACGAAGATGGAGGTGCCGGCGGCGGCGCCGCCTCCTCTGTGCACGGCACCATCTACGAGCAGTgcagcggcggtggctgcCGCAGTCGGCACCGTGTCCACCCTGGCGGATGGCCATTCGAACTCCACTTCGAACTCCAATTCGAACTCGAATGCCAAGTCCAAGAAGAACCGCATCACAGTGCTCAGCGATGTGCCGCTCAACATGAATGAGTACCTCGATCTGATGGGCAACATTGTGGCCTCCAGTCGCATCGGCACCTCTCGGCCATTTGCCGCCGTGGCGCCCATACCCCTGGTCAaggtggagaaggaggagcccCTGGACGAGTACGACAATGCGGAGGGGCACATGTCGGATGCGACGGATCCCATGTTGCTGTTGGAGCATAAGCCGAGCTTGGAGCAGAGCAGTGGGGGACATGGCACAACCAGCGTCATTCGCATGGCCAGCGCCATGTCGGCGGCCACAGACGACTTCACACAGCCGCCGCCCATGAAGGTCGAGGTCGAGGTCACGACGCTGCTACCTCAGCGGTTCTCGACTCCTGCCCAGCTTCGTGGACCCAAGAAATTAGTCATCAAACCAAAGGCCACGGCAACGGCaccgacgacgacaacaacaacaaaacaaaagactgaCACCCCATCTTCCTCGAGCGCGGATCCTCCAGCATCCACCTGCACCTCCACATCCATATCAAAATCCACCACGGAGCTGGTTCACATTAAGAGCGAGATCACGGAGATGCCGTCGAGCAGCATCCTGGAGAAGCATCTGACCACCAGGAAGCACTCGACGGTCAACGATGACGATGCTCGGGTCCTGCTGGAGTTCGCCAATTCGAAGCAGCCGTCGACACTCGCAGGCACCGCCTCCAGCACCACCTTTGTGGTGAATGCCAATTCTGGTTTCCCCTCCGCGGGCTCTGTGTTTGCCAGCAGCACGGGCACGGGGGCGCAGAAGCcgggccaagccaagccggGCGAGGAGTACATTCTGCCGGACAACAATCTGGAGGTGGATGAAATTGTGATATCCTCCTCGTCTTCCTACGCCTCATCCGTGGCGCAGGTGCATCCATCGCTGCCCGCATCGCTgcagccaccagcagctgccgcGTCCTTTAACGACTTCAATTTCCTATACCACCAGACCACAACCACGGCCACAACGTCCGCGAACTGTGCCTACTTCACGCCCTTCGgccgacaacagcagcagcagcagcaacacacgCAGCACGGAGTCAGCGATGCCACGAATGCAGCCACCTTGGCCTCCTCTTCCAGCAATTCCTCGGCTATGGATCACGACTCGATGAATGCCACGTTTCGGGTGGCCAAGACGCAGTCGCTGCAGTCCTGGTACCAGCCAGATCAGGACCACGATCCACAGAATCagtcagcagctgcagcaacatcagcaaccgGAGCAGGAGCTAGTGCCTCCTCCTctagccagaaccagaaccatgAAGGGGCGCAGCCCACCAACTTCAATGCCGCTTTGGCTGCAGTCGATTGCTGCAGTGTAGCCATCGATGGGGATGTCAAGTATCTGGATCTGGACGCGTGCAAGCGGGAGCaactgagcagcagcagcaatctgCCATCGGCATCCGCCTCCACATCGACAACATCCTCATCGTTCGCTGGGGCGGCCACAGAGAGCAGTCTCGTGGGTGGACTCAACATACGCACCGATGAGAAAATGCCCGCCAAGGGCGAAATCTCAGAGCAGGAGAGCAACTGTGACATCGAGAACTCGTGGAGTCAGTCGGTGTACGGCGACATATCACAGCGATACTTTAGGAATCAGTTCACTGGCGGCTACAATCCCGACTGGCGGCAAGACTACTATCCGGTGCAGGATCTCAGCGCTCAGCAGCGGGAGCAAAAGCGATTCGATTTTAATGCTGTCGACGATGAGGCCTCCTCGAGCTCCAGAAAGAGTCATCTGATTGATGAGCAGCCGGCAGCCACCACTTCCTCGACGTCTTCAGCATTGCTGGCTGGTCCACCAATCGCTTCAACGTCCCGGGCTGCCGCTGAGGCGGCGGAGGCAGCAGCTTCGGCTGCTTTGGCGCAGCGCAAGCCGCATCGTCGCAAGCTCTACAAGTGTCCACATTGTGAGGCGATCTTTGAGAAGCTCAAGGAGCGGAATGCGCACATGATTGGCGAGCACAACTATGTGCGTCAGAATCGACGTCTGATTTGCACGCAGCCGCAAATCGGTGGTGCATCGATGTTGCCCCCACCACCGtctcagcagcaacagcagcagcagctgctcatgCATGCGGGCGTGGGCGTTGGCGTGGGCATGGGCAACGGTAGCGATGAAGGTGTGCAAGAGGATTCCAAAGATGGCATTGTCAAGATCAAGCAGGAACAGTGCCAGGACAGGCCGGATGTGGAGCAGATTGTGACCAGTCCCGAGCTGCTGACTGATGTCAAAGATTCCCAGCTGCTGGGCATTAGTGGTGGTGGCGATGGCGAAGCGGATGGTGATATCAAGCCGCCCAGTCAGCTGGACCAAAAAATGACCCTCCCGCCATTGGCGATGACCACGCCAGCCGCAAAATTGGCGGCTTTATATCGAATGCTTATTTCCTACAACGAGTCGAAGCTGGGACAGGAGCGCAACAACCTCAACGAGCTGGAGCAGAAGGCGATGGAGAAGTCCATCTTTCTGTGCTATGTCTGCCGCACCGACTTCCCCTCCGTTAAGCTCTACGATGCACATCTCACGGAGCATCCCGCCGAGTGCTTCACCTGTGGCAAGAAATTCTACAGGTGGAAGAACTTCTCCCTGCATCTGAAGCGCCACTTGGGCTGGAAGGAGTTTGGCTGCTATGTCTGCGACAAGAAGTTTGTCGTGCGGAGCGCCCTCGTCGAGCACATGCGCATGCACACGGGCCAGACGCCGCTCAAATGCAAGATATGCGGCAAAAAGTTTAAGCGGTATTCGAATTTGACGCAGCATCGCAAGCGTCACACAAAGGTGATGGTGCGCAAGAAGGAGTACGTGTGCCACTGCGGCGAGGTGCTGCCGTCGAAGGCACGCTTTCTGTGGCACAAGGAAACGCACGATGTGAAGCCCAAGTGCTGTCCGTATTGCTGTGACCGGTTCGTGCATGCCAACTCGCTGCGCCGCCACATACGGCTGGCGCATTCGGATAAGTTCGACTACGCCGAGCCGATGGAGTGTCCCATGTGCAAGCAGATCTTTGCCAAGACCTCGATCAAGGCGCATATGGCCACGCACTCGACGGATCCGCAGTACGACTGTGCCATCTGTAACAAGAGCTTCTCCACCAAATGGAATCTCAAGATACACTCGTGGGTGCACGCCAATCGGACGGCGAAACCGTTCAAGTGCGAGTACTGCCCAAAGGCGTTTGTGCGAGAGCTGGACTTCAAGAACCACATTAACGCACACAAACAGATCAAGCCGTACACCTGCGAGTATTGTGGCTGCAAGTTCATACGAAAGTACAACTACATGCGGCACCGACGCGAGCACCACGGCACCAAGAAGTTCACCTGCGACCAGTGCGACAAGTCATTCCATCGACACTACTATCTGATCGAGCATCGGCGCATGCACACGGGCGAGCGGCCTTTCACATGCACCATATGCGGCAAGAGCTCCACCACCAAGACCAATCACAACAAGCATCTGAAAATCCATCACTCGCGCGATCCCTTCACCGTGGAGGTCTAA
- Protein Sequence
- MVDSVQCPVCTLYLHAGMNLSDHLETHPKEQVIKALVQMTIVGNTGMGNALAAAMLGDGSSKAAGGADAGGSEDTAASSASLSSAADVKPVVVAASSSAAKPITSASNASTASLQPPPLSSSSASSSNSSKLSNPPMKALKCAPPTTEARANNTSAPTTNSAMTALYQPPLVTTDYRYTNQQQQQQQQQQPGFPRGTSTATATATLVIPQVPHQHFLTSSHPQQQQLQQQQTHFAHQQQQQHPGLKFTYATTLPPPPPLQLFTQQQQQQQTVAQPHQKPPPAYGAAISQIRSQHNQNKQQHQQQHQQQQHQQQHVTVHHNVTLAPPTTTTPTAAAAAAGGGKHSGKAHTEVFLNPPPPPMPPQAHAQHQQNQHHHHQQHQQHQQQQQQQQQAQQSSMPVALTTSAPRQQQQQQAVTLQTYGSSAGSCSSSSSTAGRGSRQTNSPFGALLNAAAAAASSSPSSASASAASVLRYAESPVAHYLERDNGDFIVQETPKHIVECVEKEDGEFSVIERIYQSPPSVLHIHDDDEDDDDDDDDEEDEENEAALQDEHDHVEDGDDERDENSHCRNLTKTTKKSRKTKPKRTSKKTPRQHLSDEEFMSISSGCESDSEPETKMEVPAAAPPPLCTAPSTSSAAAVAAAVGTVSTLADGHSNSTSNSNSNSNAKSKKNRITVLSDVPLNMNEYLDLMGNIVASSRIGTSRPFAAVAPIPLVKVEKEEPLDEYDNAEGHMSDATDPMLLLEHKPSLEQSSGGHGTTSVIRMASAMSAATDDFTQPPPMKVEVEVTTLLPQRFSTPAQLRGPKKLVIKPKATATAPTTTTTTKQKTDTPSSSSADPPASTCTSTSISKSTTELVHIKSEITEMPSSSILEKHLTTRKHSTVNDDDARVLLEFANSKQPSTLAGTASSTTFVVNANSGFPSAGSVFASSTGTGAQKPGQAKPGEEYILPDNNLEVDEIVISSSSSYASSVAQVHPSLPASLQPPAAAASFNDFNFLYHQTTTTATTSANCAYFTPFGRQQQQQQQHTQHGVSDATNAATLASSSSNSSAMDHDSMNATFRVAKTQSLQSWYQPDQDHDPQNQSAAAATSATGAGASASSSSQNQNHEGAQPTNFNAALAAVDCCSVAIDGDVKYLDLDACKREQLSSSSNLPSASASTSTTSSSFAGAATESSLVGGLNIRTDEKMPAKGEISEQESNCDIENSWSQSVYGDISQRYFRNQFTGGYNPDWRQDYYPVQDLSAQQREQKRFDFNAVDDEASSSSRKSHLIDEQPAATTSSTSSALLAGPPIASTSRAAAEAAEAAASAALAQRKPHRRKLYKCPHCEAIFEKLKERNAHMIGEHNYVRQNRRLICTQPQIGGASMLPPPPSQQQQQQQLLMHAGVGVGVGMGNGSDEGVQEDSKDGIVKIKQEQCQDRPDVEQIVTSPELLTDVKDSQLLGISGGGDGEADGDIKPPSQLDQKMTLPPLAMTTPAAKLAALYRMLISYNESKLGQERNNLNELEQKAMEKSIFLCYVCRTDFPSVKLYDAHLTEHPAECFTCGKKFYRWKNFSLHLKRHLGWKEFGCYVCDKKFVVRSALVEHMRMHTGQTPLKCKICGKKFKRYSNLTQHRKRHTKVMVRKKEYVCHCGEVLPSKARFLWHKETHDVKPKCCPYCCDRFVHANSLRRHIRLAHSDKFDYAEPMECPMCKQIFAKTSIKAHMATHSTDPQYDCAICNKSFSTKWNLKIHSWVHANRTAKPFKCEYCPKAFVRELDFKNHINAHKQIKPYTCEYCGCKFIRKYNYMRHRREHHGTKKFTCDQCDKSFHRHYYLIEHRRMHTGERPFTCTICGKSSTTKTNHNKHLKIHHSRDPFTVEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00471815;
- 90% Identity
- iTF_00487461;
- 80% Identity
- -