Dsub008930.1
Basic Information
- Insect
- Drosophila subsilvestris
- Gene Symbol
- -
- Assembly
- GCA_035043285.1
- Location
- JAWNNB010001724.1:5236258-5237769[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1e-16 1.6e-13 50.2 0.0 2 45 334 377 333 377 0.95 2 3 0.0077 12 5.8 0.0 27 37 406 416 402 421 0.90 3 3 7.9e-20 1.3e-16 60.1 0.0 2 42 443 483 442 485 0.96
Sequence Information
- Coding Sequence
- ATGGGCCACTCGTCCACAATAATGGACCTGCAACGCTCCCTGCGCAACGATATCCAAACATGCGAGGTTGTGCTGGCCGCCAAAGACGGCTTCAGTGTACGCGCCCATTCCTTCGTGCTCAGCACATGCAGCGATCTGATGCGGAATCTTCTGGTGGATGTCCCGCCGGGCCATGAGGCCACCATAGTGCTACCAGATATCCGCGGGGAACTGCTGGAAAGTATGTTGTCGTTCATCTACATGGGCGAAACAGGACTGCCCTCGGTGCTGCTCACCGAATTTCTGGAGGCCATCAACCTATTGGGCATCAAATCCGCCATTAGCTTCGAGTGCAATCCCTCCTCCAACGTGGACGTAGGCGCTGGCGCTTTGGCGGTAGAGGCAGCTAAATCAATCAGCGGCCTGCAAATCGCCCAAGCCGAGCTGATCGACGAAGAGGAGGAGGGACAGGCACAGATGGCTGTGGCACCCGCAGTCATAGCTGAAGAGCAGCCACATCAGCCAGCAGCACGTCCGCTGGAGTTTCTCGATGTGTACAACGAGACGCCAAAGATTACGTACTCCATTGAGCACATGGGCGGCCACTCGAACGGCAATCAGTTTATTCTCACCGAGGATACGGGAGCATTTACAATCACACAGTCGGCGTCCAGTTTGTCCAAGCTGGAGACCTCAGAAAATGCGAACAGTGGCGGTGAGGTGGATATGGTGGAGGATGACGCGGATGCGGATACCACTGAAGAGGAGCcagaaacacaaacactcgAGGAGGAATATCCCTCAGATCCATTGATTGAGATGAACGCCAATGCAGATATGGACGACGATGAGATGCACGAGGATCTGGTGGATGAGGAGATGCTGGAAGTGAAGCCGCGCAAACTGGCTGTGGCCAAGCCGAGAGGCCGACGACCCAATCGGACAAAGACTATAAAGCGAGCGCCgcccaggcagcagccacagtttCTCAGCATCAAACACGAAGGCAAAGATGACATTAACGATGCCCTGGATCTCGCGGCCGACGCTGTAATCCTCGAGGGTCTGAGTCTGCAAAAGGCTGCCGATCGCTATGATATCTCAAAGACTGTCCTGTGGCGTCGTGTGCGCACCAATCCCGCGTATATGCGAAGCAACCGCGAGAGGCCATCATTGTCTGAGGCGTACGAAAGACTTAAAACCGGCGACTCGCTCAAGAACATCAGCCAAGATCTGGGCATACCCATGTCAACCCTACATCGACACAAAGTTCGACTGTCGGCGCAGGGTCGTCTGCCAGACTTTGTCGCTTGCCGCCGCCGTGACACTACCCCCAAGGACGAGCTTCGCGAGAAACTGGCCAAGGCCGTCCATGCCTGCCTTAACGAGGGTATGTCGCAGAACCATGCGGCGAATCTGTTCGAGATACCCAAGAGCACGCTCTGGCGTCACCTACAGCGTCGCATGTCCAACGCGGACCGCAAGGTAAAGAAGGAGGAACAGGATGACTACGATGAGGAGATTCTGAACTAG
- Protein Sequence
- MGHSSTIMDLQRSLRNDIQTCEVVLAAKDGFSVRAHSFVLSTCSDLMRNLLVDVPPGHEATIVLPDIRGELLESMLSFIYMGETGLPSVLLTEFLEAINLLGIKSAISFECNPSSNVDVGAGALAVEAAKSISGLQIAQAELIDEEEEGQAQMAVAPAVIAEEQPHQPAARPLEFLDVYNETPKITYSIEHMGGHSNGNQFILTEDTGAFTITQSASSLSKLETSENANSGGEVDMVEDDADADTTEEEPETQTLEEEYPSDPLIEMNANADMDDDEMHEDLVDEEMLEVKPRKLAVAKPRGRRPNRTKTIKRAPPRQQPQFLSIKHEGKDDINDALDLAADAVILEGLSLQKAADRYDISKTVLWRRVRTNPAYMRSNRERPSLSEAYERLKTGDSLKNISQDLGIPMSTLHRHKVRLSAQGRLPDFVACRRRDTTPKDELREKLAKAVHACLNEGMSQNHAANLFEIPKSTLWRHLQRRMSNADRKVKKEEQDDYDEEILN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00611273;
- 90% Identity
- iTF_00514999;
- 80% Identity
- iTF_00603467;