Basic Information

Insect: Drosophila suboccidentalis
Gene Symbol: salm
Assembly: GCA_037043435.1
Location: JBAMBK010001078.1:640454-647276[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 2.7e-06 0.00019 21.9 1.7 1 23 350 372 350 372 0.98

2 8 3.7e-05 0.0027 18.3 3.5 1 23 378 400 378 400 0.98

3 8 2.6 1.9e+02 3.1 2.5 5 23 652 670 649 670 0.84

4 8 3.9e-08 2.8e-06 27.7 0.2 1 23 676 698 676 698 0.98

5 8 0.0012 0.085 13.6 0.9 1 23 708 730 708 730 0.98

6 8 0.059 4.3 8.2 0.1 2 23 937 959 937 959 0.96

7 8 1.3e-05 0.00092 19.8 5.0 1 23 1101 1123 1101 1123 0.96

8 8 1e-07 7.3e-06 26.4 0.7 1 23 1129 1151 1129 1151 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	2.7e-06	0.00019	21.9	1.7	1	23	350	372	350	372	0.98
2	8	3.7e-05	0.0027	18.3	3.5	1	23	378	400	378	400	0.98
3	8	2.6	1.9e+02	3.1	2.5	5	23	652	670	649	670	0.84
4	8	3.9e-08	2.8e-06	27.7	0.2	1	23	676	698	676	698	0.98
5	8	0.0012	0.085	13.6	0.9	1	23	708	730	708	730	0.98
6	8	0.059	4.3	8.2	0.1	2	23	937	959	937	959	0.96
7	8	1.3e-05	0.00092	19.8	5.0	1	23	1101	1123	1101	1123	0.96
8	8	1e-07	7.3e-06	26.4	0.7	1	23	1129	1151	1129	1151	0.98

Sequence Information

Coding Sequence: ATGTGTTCAATATTTCGCAATCGAATCAATTACCGGGGCACAGGGACGCGCAGTGGCGCCTCCGGAGGTGGCACAGCCCCAAGCGGCGAGAGGGAAAGTCTGCTGGCCAAGGAACTCAGCGCGGATAGCAATAACAATGGCAGTGGAGTGGATGAGGTGCCCCAACTGCATCCCGATGCGGAAGCGGAAGCGGATGCAGATGCAGAACTTCAACTGGAAACATCGCTGGAGACATCGGTGGCCGGGAACTCGGAGCAGCCGGAGAACAGCAATGAGGCGTTGGATCTGTCGGTAATCTCCGGCAACCGTTTGCCCACGTCGGGGCATGTGGCACTTGAAGCTTTACAACATACCAAAGTGGCGGTGGCTCAGTTTGCAGCAACTGCGCTGGCGGGGGCAGCTGACCCCAGTGATCTGGCCATGGTGCAGTCGACGATCTTCAATGTGCAGCGACAGCATCTGATGCAGCTGCAGCTCATCCAACATTTACAGAGTCAATTGAAGCGGGCTGGAGGCGTGGTCGCTGCTCTCAGCAGGCAGGATGGTAACAACGAGGAGGAGGTCGACGACTTGGACGCGGAGGAGGACGAGGAAAATCCTGCCAAAGAACAGCCGAGGATAAATGGCGAGGCGACAGAGAGCGAGCAGGAGAGTTTAAAGACTGATGGGCAGGACTTGACCATAGAAAAGGCTAAGGAGTGCAATATGAAAAACGAACAAGCGATGGAAAGGGAGAgggacagagcgagagagagggagcaaGTCAAGCTGGAAAGCGAGCGGGAGATTGAGGCTGAGGTCGAACCCGAGACGGAAAATGACTATCAACCGTTAATGTGCGACATCAGCTCCAGTCTGGCCTCAAGCATTATCACCAACCACGACCCGCCGCCGGCACCGAACGAACCCAACTGCCTGGAGATGCTGCAACGCCGCACGGAGGAGGTGCTGGACTCCGCCTCGCAGAGCTTGCATGCGGCACAGATGCAGGAGGAGTACTCGGAGTATGCCTCGAAGGAGGCACAGAGTCGCGGGGAGATCTTCAAGCACCGTTGCAAGTATTGTGGCAAGATCTTTGGCAGTTACTCGGCCCTGCAGATCCATTTACGGTCCCACACCGGCGAGCGACCCTTCCACTGCAACGTCTGTGGCAGCAAGTTCACCACAAAGGGTAACCTCAAGGTCCACTATCAACGGCACACGCAGATCTTTCCTCCCATGCTGCTGCCCCCTGTGGTCAATGGAGGAGGTCCTTCCGGGGCGAACCCCGAACAGTTTGCCGCTCTCACGCCCATTCGGTTACCATTCGTGCCGCCTGCGCCTCTAGCTCCACCGCCGCCTCCGCCCCCCAGCCGAGATCAGCCAATAGTGGagcagtcccagtcccagctCCAGTCCCAGCCTCAGCCACAGCAGCCGCCTCCATcgcagcaggagcaacaagTGCCACAGCAGGCGGAGGACCTGAGCAAGCCCATGCGAGAAAGATCCAACTCGCCCGTGGAACGAGCAAAGACACCAACAAAGTCCCTGCCCGATCGAAGTCGAGTCGTAACGGAGCCAGTTCAAGCTTCCCCCGAGAAACCCTCACAAGAGAAGGAGAAACCCAAGGAGAGTCCGAAGGCGACGACACCAACGTCAGCGTCGAGCCGGCGCAACGGCAGCGTGCGGAAACGTCAGACGAGCAACGCGGGAAGTCCCCCCGGGGAGGAACGATCCGCGGAGCATGCCGAGCATCTGCACATTGCCAAGCTGGTGCGTCGCTCCTCGGCTAGTCGGGATGGCTCGGTGGGAGTGCCCGGAGCAGGGGAATACTCGCTTGCCCAGATGGAGCGCATCATAGACAAGTCGTGGGAGGATCTCATAGAGATCGACAAGACATCGGAGACGTCGAAGCTGCAACAGCTCGTGGACAACATTGAGAACAAGCTGACGGATCCGAATCAGTGCATCTTCTGCCAGAAGGTCATGTCCTGCCGCAGTTCGCTCCAGATGCACATACGCACCCACACGGGGGAGAGACCCTTCCGCTGCAAGATCTGTGGACGCGCCTTTGCCACCAAGGGCAACCTAAAGGCGCACATGAGCATCCACAAGATCAAGCCCCCTATGCGGAGTCAGTTCAAGTGTCCGGTGTGTCATCAGAAGTTCTCCAACGGCATTATCCTGCAGCAACACATACGCATCCACACCATGGACGATGGCAGCGGTGGTCAGGGAGGAATACAGGGTCAGACCATCGGAGTTGGCGATGTGGAGCGTTTGGGCATTGAGGATCAGAACTCCAACAAGTCGCTCGGCACCTCGGATACCCTGGACTTCTCCACAACTATTTCCGACCATTCGGGACAGCGCTCGGAGTCCTCGCAGGGAGGTGACTTCGATGAGTTCATGACAATGGACAGCACTGACGATTCACGGGACAATTCCAGCGCTGCCACAGCCACGCCCTTGGaccgagagagggagagagacagacgaCCTGCCGCCCACGATTTCTGCGACGAACGATCCAGATCCGATCTGGACGGCGGTGGACGTGAGAGCGCCAGCGGTGGTGAGCTACCACCCATGGATCTCTCATCTCCATCGTCGGTGGCTGCTGCAGCGCGTCTCTTTGGAGTCAGCAATGGTGCGGGAGCTGGAGTAACTGGAGGTCTGCCCATGCTCGGCATGCCACTACCCCCGAATCTGCTGCTCATGGCGGCGGCGCGAGAGGAGATGCATGCTCTGGGCCAGGCACATGCCAAGTTTCCGCTGTTGCCCTTCGGACCGCTCGGATTTATGGGTCTGCAGCCGCCCCCAAATGTGTGCAACTTGTGCTTTAAGATGCTGCCCAGCCTGGCCGCCTTGGAGAGTCATCTACAGAGCGAACATGCCAAAGAAGTCACGATTCCATCGGGCCGAGCCCACAACAACGAGGCGGTATCGCCCTACGGAGCCAAGCTCACTCTCAATCCCAATCTGTTTGCAAAGAAACCGAAGCCGACGCAGGAGTTGACGTTGGCGCCGGCGTCTGTGACGGCAACGGCAGAGCCAGTTGCATCAACGGCGGTGCCCATCAAAGAGGAGCCCGAGTCCGAGCAGCTGTCGGCCGAGGAGGCGGCCTGCGAGGGAAGTGGGGCAGCTGCCAGCGGCACCAGCAGCTATCACCAGGAAGCCGCAACCGATGCGGAGCAGTCGCTGATGAAGATGCAGCTCCATGCACATCGCTTTCCTGCAAGTCCGCTGGACTTCCAACAGGCTCTGATGTCGGCTGGCCCGCCCAGCTCCAGTCTCGATCCTCCGATAAACAACAAGCACTTTTGCCATGTCTGTCGACGcaacttcagctccagctccgcGTTGCAGATCCACATGCGAACCCACACCGGGGACAAGCCCTTCCAGTGCAATGTCTGCCAGAAGGCCTTCACCACCAAAGGCAACCTCAAGGTGCATATGGGCACTCACATGTGGACGAATCCCACTTCACGTCGTGGGCGTCGCATGTCCTTGGAACTACCCATGCGACCTGGTCCTGGACCGACTGGCCCGCCGACTGCCGAGCAGGAGTTCATGCAGCGTCGACCTGAGCTCTTCTTTCCCTACTTGCCACCCTTTTTCAATGGAATGCCGCCCAAGCCTGGAGAACTAAGTCCTGGCGCCTTCGGGAGCATTCCTCCACCGCATTTCGCCAACGGAGCCAAGTATCCATATCCACCTGGACTGCTGAGCTTTCCAGGCTTTCTAGGTGCTGGTCAGCAGCCGCATCCGTACGCTATGGAGCGACTAGGCGACAGTAAATCTCCCACGTCAGAGCCGGCGCAAAGTCCGCCATCGCGGGAGGATGAGGGCAGTTTGGGAGGAAATAATATCTGGCATCCGTTGAGTAGCATTAAAATGGAGAACAATCAAAATGAGAGCACTGGCAATCAGAGCGAATTGGAGCAGGATCAGGAGCAGGACGATAACGACGATGAAGAGGCGGACGTTGATGCCGAGGCGGCGGATGTTGAAGAGTCGGAGGAGAGGAGCGGGCCAGAAAAGTAG
Protein Sequence: MCSIFRNRINYRGTGTRSGASGGGTAPSGERESLLAKELSADSNNNGSGVDEVPQLHPDAEAEADADAELQLETSLETSVAGNSEQPENSNEALDLSVISGNRLPTSGHVALEALQHTKVAVAQFAATALAGAADPSDLAMVQSTIFNVQRQHLMQLQLIQHLQSQLKRAGGVVAALSRQDGNNEEEVDDLDAEEDEENPAKEQPRINGEATESEQESLKTDGQDLTIEKAKECNMKNEQAMERERDRAREREQVKLESEREIEAEVEPETENDYQPLMCDISSSLASSIITNHDPPPAPNEPNCLEMLQRRTEEVLDSASQSLHAAQMQEEYSEYASKEAQSRGEIFKHRCKYCGKIFGSYSALQIHLRSHTGERPFHCNVCGSKFTTKGNLKVHYQRHTQIFPPMLLPPVVNGGGPSGANPEQFAALTPIRLPFVPPAPLAPPPPPPPSRDQPIVEQSQSQLQSQPQPQQPPPSQQEQQVPQQAEDLSKPMRERSNSPVERAKTPTKSLPDRSRVVTEPVQASPEKPSQEKEKPKESPKATTPTSASSRRNGSVRKRQTSNAGSPPGEERSAEHAEHLHIAKLVRRSSASRDGSVGVPGAGEYSLAQMERIIDKSWEDLIEIDKTSETSKLQQLVDNIENKLTDPNQCIFCQKVMSCRSSLQMHIRTHTGERPFRCKICGRAFATKGNLKAHMSIHKIKPPMRSQFKCPVCHQKFSNGIILQQHIRIHTMDDGSGGQGGIQGQTIGVGDVERLGIEDQNSNKSLGTSDTLDFSTTISDHSGQRSESSQGGDFDEFMTMDSTDDSRDNSSAATATPLDRERERDRRPAAHDFCDERSRSDLDGGGRESASGGELPPMDLSSPSSVAAAARLFGVSNGAGAGVTGGLPMLGMPLPPNLLLMAAAREEMHALGQAHAKFPLLPFGPLGFMGLQPPPNVCNLCFKMLPSLAALESHLQSEHAKEVTIPSGRAHNNEAVSPYGAKLTLNPNLFAKKPKPTQELTLAPASVTATAEPVASTAVPIKEEPESEQLSAEEAACEGSGAAASGTSSYHQEAATDAEQSLMKMQLHAHRFPASPLDFQQALMSAGPPSSSLDPPINNKHFCHVCRRNFSSSSALQIHMRTHTGDKPFQCNVCQKAFTTKGNLKVHMGTHMWTNPTSRRGRRMSLELPMRPGPGPTGPPTAEQEFMQRRPELFFPYLPPFFNGMPPKPGELSPGAFGSIPPPHFANGAKYPYPPGLLSFPGFLGAGQQPHPYAMERLGDSKSPTSEPAQSPPSREDEGSLGGNNIWHPLSSIKMENNQNESTGNQSELEQDQEQDDNDDEEADVDAEAADVEESEERSGPEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00608619;
90% Identity: iTF_00575781;
80% Identity: -