Dsub001638.1
Basic Information
- Insect
- Drosophila subobscura
- Gene Symbol
- -
- Assembly
- GCA_008121235.1
- Location
- NC:5622845-5624683[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 6.1e-17 1.1e-13 50.1 0.0 2 45 340 383 339 383 0.95 2 3 0.0046 8.5 5.7 0.0 27 37 412 422 408 427 0.90 3 3 5.5e-20 1e-16 59.9 0.0 2 42 449 489 448 490 0.96
Sequence Information
- Coding Sequence
- atgAATCACCTGAAATGGATGGGACACTCGTCCACAATAATGGACCTACAACGTTCCCTGCGCAACGATGTCCACACATGCGAGGTTGTGCTGGCCGCCAAAGACGGCTTCAGTGTTCGCGCCCATTCATTCGTGCTCAGCACATGCAGCGATCTGATGCGAAATCTCCTGGTGGATGTCCCACCGGGCCATGAGGCCACCATAGTGCTGCCCGATATCCGAGGGGAACTGCTGGAAAGCATGCTGTCGTTCATCTACATGGGCGAAACAGGGCTGCCCTCGGTGCTGCTCAGCGAGTTTCTGGAGGCCATCAACCTATTGGGCATCAAGTCCGCCATTAGCTTCGAGTGCAATCCCTCCTCCAACGTGGACGTAGGCGCTGGCGCTTTGGCGGTGGAGGCAGCAAAATCAATCAGCGGCCTGCAAATCGCCCAGGCCGAGCTGATtgacgaagaggaggagggacAGGTACAGATGGCTGTGGCAGCCTCTGTCATGGccgaggagcagccagcagcacacaccAGCCGTCCGCTGGACTTTCTCGATGTGTACAACGAGACGCCAAAGATCACGTACTCCATAGAGCACATGGGCGGCCATTCGAGCGGCAATCAGTTTATTCTAACCGAGAACACGGGAGCATTTACAATCACACAGTCGGCGACGAGCTTGTCCAAGCTGGAGACCTCCGAAACTGCGGCCAGTGTCGGCGATGTGGACATGATGGAGGATGACGTGGAAGCGGACACAACCGAAGAGGAGCCGGAAAACCAAATACTCGAGGAGGAATATCCCTCAGATCCCTTGATTGAGATGAGCGGCGGTGGAGATATGGACGATGATGAGATGCACGAGGATCTGGTGGATGAGGACATGCTGGATATAAAGCCGCGCAAGCTGGCGGTGGCCAAGCCAAGAGGCCGACGCCCCAATCGAACAAAGATCATGAAGCGAGCTCCGCCCAGACAACAGCCCCAGTTTCTCACCCTCAAGCACGAGGGCAAGGATGACATTAACGATGCCCTGGATCTCGCGGCCGATGCCGTCATAATCGAGGGTCTCAGCCTGCAGAAGGCTGCCGATCGCTATGATATCTCGAAGACTGTCTTGTGGCGTCGTGTGCGCACCAATCCCGCGTACATGCGAAGCAACCGCGAGAGGCCATCGTTGTCGGAGGCGTACGAAAGACTCAAGACCGGCGACTCGCTAAAGAACATCAGCCAGGATCTGGGCATACCCATGTCCACACTACATCGACACAAAGTTCGACTGTCGGCGCAGGGACGCCTGCCAGACTTTGTCGCCTGCCGCCGCCGTGACACCACCCCCAAGGACGAGCTTCGCGAGAAACTGGCCAAGGCCGTCCATGCCTGCCTCAACGAGGGTATGTCGCAGAACCATGCGGCGAACCTCTTCGAAATACCCAAGAGCACGCTCTGGCGTCACCTGCAGCGTAAAATGTCCGGTGCGGACCGCAAAGTGAAGAAGGAGGAACAGGATGACTATGAAGAGGAGATTCTGAACTAA
- Protein Sequence
- MNHLKWMGHSSTIMDLQRSLRNDVHTCEVVLAAKDGFSVRAHSFVLSTCSDLMRNLLVDVPPGHEATIVLPDIRGELLESMLSFIYMGETGLPSVLLSEFLEAINLLGIKSAISFECNPSSNVDVGAGALAVEAAKSISGLQIAQAELIDEEEEGQVQMAVAASVMAEEQPAAHTSRPLDFLDVYNETPKITYSIEHMGGHSSGNQFILTENTGAFTITQSATSLSKLETSETAASVGDVDMMEDDVEADTTEEEPENQILEEEYPSDPLIEMSGGGDMDDDEMHEDLVDEDMLDIKPRKLAVAKPRGRRPNRTKIMKRAPPRQQPQFLTLKHEGKDDINDALDLAADAVIIEGLSLQKAADRYDISKTVLWRRVRTNPAYMRSNRERPSLSEAYERLKTGDSLKNISQDLGIPMSTLHRHKVRLSAQGRLPDFVACRRRDTTPKDELREKLAKAVHACLNEGMSQNHAANLFEIPKSTLWRHLQRKMSGADRKVKKEEQDDYEEEILN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00611273;
- 90% Identity
- iTF_00514999;
- 80% Identity
- iTF_00601165;