Dstu012883.1
Basic Information
- Insect
- Drosophila sturtevanti
- Gene Symbol
- -
- Assembly
- GCA_018150375.1
- Location
- JAECWJ010000690.1:3105564-3117579[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0011 0.077 13.4 2.9 3 23 278 298 276 298 0.96 2 11 0.001 0.072 13.5 10.5 1 23 305 327 305 327 0.96 3 11 0.0001 0.0072 16.6 6.5 1 23 333 355 333 355 0.98 4 11 0.00031 0.022 15.1 2.3 1 23 361 383 361 383 0.95 5 11 2.2e-05 0.0016 18.7 0.5 1 23 389 411 389 411 0.97 6 11 7.4e-06 0.00052 20.2 0.1 1 23 417 439 417 439 0.98 7 11 0.00013 0.0088 16.4 2.0 1 23 444 467 444 467 0.97 8 11 0.0008 0.056 13.8 0.2 1 23 473 496 473 496 0.94 9 11 0.00017 0.012 16.0 0.1 1 23 558 580 558 580 0.98 10 11 0.015 1.1 9.8 2.7 1 23 661 683 661 683 0.95 11 11 0.0045 0.31 11.5 4.9 5 23 696 714 688 714 0.92
Sequence Information
- Coding Sequence
- ATGTGCGCTGCACAGAGCAATCCTCCGCCCTTTGGCTACGCTTGGGGCTTTGCAGACAACGGCAGCCGTACCGCCGAATCGGTATTGGAAATATCGCCAAATATTAATTACACTGTTAGTGGGGAGATGCCCTATCTGTTATCCACGGATGGATCATTGGCCGTACAAAAGGATGTTAAAGGTGCACTTGCTGCTGCTGGCAACAAAGCGAATGTCGTGCGTCGCATGTTCGTGGTGAACGACTCCTCATTTCCGCATGGTACACAAAGAGTAATTACAACAGGCGCCACCTCGACGGTGGTCAAGAAACAGGACTCAACCACTCAACAGGTGTTGAGCATAAATTCTCTCGATAAGAACTCCGCAGCTGCAGCAGCCAGTGCTGCCGGTGATTTGGCGGCTGGCCATCATCATACTTTGACGAATGGTAGCATTGTTGATGCCAAGACAGGACAAACCGTTTTGACCACAGGCGCAGCTGTTGCTGCCGCTGCCAAATCCCATTTAGGTTCAATCGGTGCTTTGCAACTCACACAAGAGGAGTGCAACGAGATATTGATAAAGCGTGCCATCGCTGCCGGCCATCATCAGACGCACACAATCACCACCGCCGACGGAGCGCATCATCATAGCACGGCGCCAGGCGCGACACCAAGTGACATACTTCCTGGTATTTCAGTTCAAGTACAGAAAGTAATACAAGGACTCGAAGAGAACGAGGACTCACAGGGCGACGCACCCAACTTAAAGTTGGAGCCAGGCACATTAGAGTTGTCCCCAAAGACCGAACTACAGGAATCAATGCATTTCAGCGAAAGATATAATGATAATTGTGACGAGTGCGGCAAGTCCTTTCTGCTCAAGCATCATTTGACCACACACGCCCGCGTCCACACAGGTGGTGAACGACCACATATCTGCACCCATTGCGGCAAAAGCTTTGCCCACAAACATTGCCTAAATACCCATTTGCTGTTGCATTCAACAGACCGCCCATATCAGTGCCAGGAGTGCAAGAAAAGTTTTACCCTTAAGCATCATCTATTGACGCATTCGCGAGTTCATAGCCGGGAACGGCCATTTGTGTGCCAGGAGTGTGGCCGCTCATTTCCCCTTAAACGTCACCTGGTCACTCATAGTAAATTTCACGCAGGCGAACGTCCATACGTCTGTGAGGAATGCGGTGAAAGTTTTGCCCAGGAGAATCACCTGATTATGCACTCGCGCTTTCACGGGTCATTGAATCCATTTGTCTGTTCTGAGTGCGGTGCTTCATTTCCACGTAAATTCCAATTGGTAAATCACGGACGTATTCACGGTAAAATTCCACATTCGTGCACCGTTTGCGGCAAAGAGTTTCTACAAAAGCGTACCCTAGTTTCCCACATGAGGCGCGTACATACGGGCGAGCAGGCCCATCCCTGCGTGAGCTGTGGCGAGGGTTTCCCCACTAAGGCCGAACTGCATCAGCATGTTCGTGCCGCTCACAATGGAGTTAATCCAAATACAAGCAGCGCCACCATAATAGCTAATCAACAGCAGCTGCAACAGCCTCATCATCACCCGGGACAGCCGTCTCATCCGCAGACCATAACCGTGGTGAGCAATCCAGGCAATTCTACACTACTTACGGTATCCACAACCGATGCCAATGGCGTGGCACGACCACAGTTTGTTTGCCGTGAGTGCGGTAGCGCCTTCAATAGCCGTGAAGCTTTGGCCCTCCACTTGCGTCTGCACACTGGCGATAAGAGTCTAATGACAGATCTGTGCGCCCTGACGGCAGCTTTACCCGGACATTTTTTGAGCACAGCAAGTCTAAATCCCGGCACTGTTGTTACAGCGAATCCCAATTTGGTGGGACAGAGTCCAGTGCCAGTGCAAATCATTTCGTCCACCGGCCAGGTAATGTCACAAACCACGCTGGTGCAGGCCGCCAATTCGACCCATCCGCAGGCTGTTGTTACCGCACCAAAATCGCATTTTTGTGCCAGCTGCGGCAAGGGATTCGCTGCCAAACATGGACTAATGCAGCATAATCGTCGACATCCAAACGGGGGTTGCACAGTCCGCACCCATGTCTGTGAGTGTGGCAAGGCCTTCTTCCAGAAGAATCATCTGATGCTGCATCAGCGCCAGCATTTGGAAACAAAGCCAGCCATATCACAGCAACAGGAGGATCAGGGAGCTCAGCAACAGCAACAGGTGGTGGTGGCCACATCAACGGCATCATCCGGACAGCAACAACAGCCCACACAGCAAGTTCAGGTGCAGATAATACCCGATGGTCATGTACATGGCAAGGTTATTAACTGCATGTGCTTCCGATCCCGTTTAGGATCTTTGCTTGAGCGTTGA
- Protein Sequence
- MCAAQSNPPPFGYAWGFADNGSRTAESVLEISPNINYTVSGEMPYLLSTDGSLAVQKDVKGALAAAGNKANVVRRMFVVNDSSFPHGTQRVITTGATSTVVKKQDSTTQQVLSINSLDKNSAAAAASAAGDLAAGHHHTLTNGSIVDAKTGQTVLTTGAAVAAAAKSHLGSIGALQLTQEECNEILIKRAIAAGHHQTHTITTADGAHHHSTAPGATPSDILPGISVQVQKVIQGLEENEDSQGDAPNLKLEPGTLELSPKTELQESMHFSERYNDNCDECGKSFLLKHHLTTHARVHTGGERPHICTHCGKSFAHKHCLNTHLLLHSTDRPYQCQECKKSFTLKHHLLTHSRVHSRERPFVCQECGRSFPLKRHLVTHSKFHAGERPYVCEECGESFAQENHLIMHSRFHGSLNPFVCSECGASFPRKFQLVNHGRIHGKIPHSCTVCGKEFLQKRTLVSHMRRVHTGEQAHPCVSCGEGFPTKAELHQHVRAAHNGVNPNTSSATIIANQQQLQQPHHHPGQPSHPQTITVVSNPGNSTLLTVSTTDANGVARPQFVCRECGSAFNSREALALHLRLHTGDKSLMTDLCALTAALPGHFLSTASLNPGTVVTANPNLVGQSPVPVQIISSTGQVMSQTTLVQAANSTHPQAVVTAPKSHFCASCGKGFAAKHGLMQHNRRHPNGGCTVRTHVCECGKAFFQKNHLMLHQRQHLETKPAISQQQEDQGAQQQQQVVVATSTASSGQQQQPTQQVQVQIIPDGHVHGKVINCMCFRSRLGSLLER
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00481685;
- 90% Identity
- -
- 80% Identity
- -