Basic Information

Insect: Drosophila stalkeri
Gene Symbol: -
Assembly: GCA_035047405.1
Location: JAWNPR010000039.1:31271944-31274813[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0074 0.54 10.9 0.3 2 23 14 35 13 35 0.96

2 12 0.032 2.3 8.9 7.5 1 23 41 64 41 64 0.98

3 12 0.00032 0.024 15.2 1.8 1 23 105 127 105 127 0.96

4 12 0.29 21 5.9 1.7 2 23 396 418 395 418 0.94

5 12 0.015 1.1 10.0 0.9 1 23 443 465 443 465 0.98

6 12 0.9 66 4.3 5.2 1 23 473 497 473 497 0.91

7 12 0.23 17 6.2 2.2 2 23 502 524 501 524 0.94

8 12 0.0003 0.022 15.3 0.2 2 21 537 556 536 557 0.93

9 12 0.23 17 6.2 1.0 1 23 565 587 565 587 0.97

10 12 9.2e-07 6.7e-05 23.2 2.8 1 23 593 616 593 616 0.98

11 12 3.7e-05 0.0027 18.2 1.4 1 23 622 644 622 644 0.98

12 12 0.00034 0.025 15.1 2.9 1 23 650 672 650 672 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0074	0.54	10.9	0.3	2	23	14	35	13	35	0.96
2	12	0.032	2.3	8.9	7.5	1	23	41	64	41	64	0.98
3	12	0.00032	0.024	15.2	1.8	1	23	105	127	105	127	0.96
4	12	0.29	21	5.9	1.7	2	23	396	418	395	418	0.94
5	12	0.015	1.1	10.0	0.9	1	23	443	465	443	465	0.98
6	12	0.9	66	4.3	5.2	1	23	473	497	473	497	0.91
7	12	0.23	17	6.2	2.2	2	23	502	524	501	524	0.94
8	12	0.0003	0.022	15.3	0.2	2	21	537	556	536	557	0.93
9	12	0.23	17	6.2	1.0	1	23	565	587	565	587	0.97
10	12	9.2e-07	6.7e-05	23.2	2.8	1	23	593	616	593	616	0.98
11	12	3.7e-05	0.0027	18.2	1.4	1	23	622	644	622	644	0.98
12	12	0.00034	0.025	15.1	2.9	1	23	650	672	650	672	0.95

Sequence Information

Coding Sequence: ATGCTGGTGGAAATAACAACGGACGGCATACCGAAGCTTCACTGTCCCGTCTGCAACAAGGCATTAGTTTCACTCGCCGGCTACGTGAAGCATGTGAAAAAACACGAGCCGCCTGGTGGCTTCCGGTGTCGCTATTGTGAGCATACGAGTTGTCATGAGGAGCAGCTGAAGGAACACCAGAGGATCAGCCATAGCGCCTATATTGAGTGTCGCCTGTGCCATAGCCTCTTCGGCAGCGAGGTGGAGCACGAGGCACACATCGAGGAGACGCACCAGGAGCGCAAATTCAACGTGAACCAGGACCAGCAGCTCTTCAAGTGCGAGTTGTGTGGCAAGTGCTTTGCGGATCGAGAGAGCAGCGAAAAGCATCAAGCCCAGCATGACGAGAAATGCAAAGGGATTCCAGACTCCAGCCCGACTATGCATCAACGGAATTGTCGACAAGGTTTTCCCACTCCCGCGGATGGACCTGCGCAAGTAGTCAAGCGAAAGCGTGGCAGGCCTAAGAAATGTCCAGCGCCAGCTGCAGAAGACAGCGACGACGATGTGCCCCTCGCCAGTAGGCTCAAAGTTCAAGCACCTATTAAACTGAAACAGGAGTTCGTTAGCAGCCAGGAGCTCAGCGACACGGACGAGGAGTATCCCGACTTTGAGCCCAACAACAGTGACGAGGAGGCGGATGCGAATCAGTTCAAGCTACCGCCCCCAGCACTCGTCAAGGAGGAAGCCATCGATCCCGACTTTGAGTATCAGGATGCCAGCGCCTTTGTTAAAATGGAGGGCAGTAACGGCTTGGACATCTACAGCAATGAGAAAGACAAGCTGCTGGACGTGCTGCTCAGCCAGGACGAGAGTATGAAGCCCTACGAGCATTTAAAAGTGGAGCATGCAACGGGCATTCTGGACGAGATTGCCGCTGTGCCCATGGCCAAGCAGAATGGGGAAGATCACATGGAGGAGGATGTGCTGGCACTGCGAGAAACGGAGCCAGACAGCGAAGAAGAGGCGCAACTGCGTCCGTTCACAAAATCCAGTGTAAAACGCAAGTATCGAAAGAGGGGAACAGCTGCCGCCTCGCCTGTGACCCAGGAAGAGCCAACAAATGCTCCGCGCCGCGTTGCCAAAATAACCAAAAAGGAGCTGAAGGAGCGCCTCAAAATGCTGAGTAAAATGGAGAAGACCTGGCAGTGTCCACATTGCGTGAAAATCTATCACATCCGCAAGCCCTACGAGAAGCATCTGCGCGACGATCACAAGCTAAGCGAACAGGCGGTCAAGGAGCTGTTCAAGGATGCGGATGCACACGCCAAGCTGGATGAGGAAGTTTTCAAGTGCAAAATCTGCAGCAAAATCTACTTGGTCGAGAAGCGTCTGGAGACGCACATGAAGGTGCACGGCAAGGATGGTAGTCTGATCCACAAGTGTCCCTGCTATTGCAACCTGTTCTTCGCCAGCAAGGAGCTGGCCACCCAGCACGCCCACCAGCAGCACAAGGAGCTGCTCTACTGTGAGAAGTGCGACAAGTACATGACTGGACATGACAGTCTGAAGAATCACGAGAAGAACTACCATGCCCGAAAGGAGCCGCGCAATCTGCCCCGCAATCTGATTTGCGATAAGTGTGGCAAGAAGTTCACAGGGCGCACTTCCCTCTCGGATCACGTGCGCTCCGAGTGCGGCCGAGTGCCTCTGTACGAATGCAGTGTCTGCTGCAAACGGCTCTCCACGGCCGGCATACTGAAGACGCACATGCTCCTGCACCAGTCGGAGACGCCTTACCAGTGCGACAAGTGCGGCAAGACGTTCAAGGTGAAGGCGCAGTACAAATCGCATTTGAAGACCCGTCACACAGACAACAAGCCCTACAAGTGCCATCTCTGTCCCAAGGAGTATCCATACCGGGAAAGCCTTTTAACCCACATGACTGTTCACACGGGCATCAAGCGCTTCCTTTGCAACAACTGTGGCAAACGTTTCACATGCATCTCCAATCTTCAGGCGCATCGAAAGGTGCACGCCGACACCTGTGGCCAGCTGCCCCTAAATGCGAAGGCCACGCAATATATGGGCGTACAGCGGGGCAAACTGTTAATGGGCGCCAAGCCAGAGGCGGGCATGGAATACGAGGAGACGAAAACTCTGATTGCCCAGGATGTGATCGATCGGGATATGCCGATGGCGCAGGAGCTGAACTTTCCATCCGATGGCAGCGCGCCACTGGCAACGGTTCCACTCAATTATGCTTCGTCACATCTGGTGCCTCACATTGTGCTGCAGACGATGCAGGCTGAGGCAAGGACACAGGATTAG
Protein Sequence: MLVEITTDGIPKLHCPVCNKALVSLAGYVKHVKKHEPPGGFRCRYCEHTSCHEEQLKEHQRISHSAYIECRLCHSLFGSEVEHEAHIEETHQERKFNVNQDQQLFKCELCGKCFADRESSEKHQAQHDEKCKGIPDSSPTMHQRNCRQGFPTPADGPAQVVKRKRGRPKKCPAPAAEDSDDDVPLASRLKVQAPIKLKQEFVSSQELSDTDEEYPDFEPNNSDEEADANQFKLPPPALVKEEAIDPDFEYQDASAFVKMEGSNGLDIYSNEKDKLLDVLLSQDESMKPYEHLKVEHATGILDEIAAVPMAKQNGEDHMEEDVLALRETEPDSEEEAQLRPFTKSSVKRKYRKRGTAAASPVTQEEPTNAPRRVAKITKKELKERLKMLSKMEKTWQCPHCVKIYHIRKPYEKHLRDDHKLSEQAVKELFKDADAHAKLDEEVFKCKICSKIYLVEKRLETHMKVHGKDGSLIHKCPCYCNLFFASKELATQHAHQQHKELLYCEKCDKYMTGHDSLKNHEKNYHARKEPRNLPRNLICDKCGKKFTGRTSLSDHVRSECGRVPLYECSVCCKRLSTAGILKTHMLLHQSETPYQCDKCGKTFKVKAQYKSHLKTRHTDNKPYKCHLCPKEYPYRESLLTHMTVHTGIKRFLCNNCGKRFTCISNLQAHRKVHADTCGQLPLNAKATQYMGVQRGKLLMGAKPEAGMEYEETKTLIAQDVIDRDMPMAQELNFPSDGSAPLATVPLNYASSHLVPHIVLQTMQAEARTQD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00506346;
90% Identity: iTF_00532638;
80% Identity: -