Dsta012621.1
Basic Information
- Insect
- Drosophila stalkeri
- Gene Symbol
- -
- Assembly
- GCA_035047405.1
- Location
- JAWNPR010000142.1:3377134-3383858[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.05 3.6 8.3 0.2 1 23 1373 1396 1373 1396 0.94 2 13 8 5.9e+02 1.4 0.2 1 23 1560 1582 1560 1582 0.91 3 13 0.00018 0.013 16.0 2.7 2 23 1585 1606 1585 1606 0.97 4 13 3.9e-05 0.0028 18.1 0.2 3 23 1614 1634 1612 1634 0.98 5 13 5.8e-07 4.2e-05 23.8 4.1 2 23 1641 1662 1640 1662 0.97 6 13 5.4 4e+02 1.9 0.4 5 23 1675 1693 1673 1693 0.96 7 13 1.4 99 3.8 5.4 3 23 1700 1721 1698 1721 0.93 8 13 0.14 11 6.8 0.2 2 23 1732 1752 1731 1752 0.96 9 13 5.5e-05 0.004 17.6 0.4 1 19 1758 1776 1758 1780 0.95 10 13 1.6e-05 0.0012 19.3 0.5 1 23 1788 1810 1788 1810 0.98 11 13 0.0001 0.0076 16.7 7.6 1 23 1816 1838 1816 1839 0.96 12 13 0.0002 0.015 15.8 5.9 1 23 1844 1866 1844 1866 0.98 13 13 0.029 2.1 9.1 8.2 1 23 1872 1894 1872 1895 0.95
Sequence Information
- Coding Sequence
- ATGGTGGACAGTGTGCAGTGCCCCGTGTGCACTTTGTATCTGCACGCGGGCATGAATCTCTCCGATCATCTGGAGACACATCCCAAGGAGCAGGTCATCAAGGCGCTGGTGCAAATGACCATTGTGAGCAACAATGGCATGGGCAGCACCCTGGCAGCAGCTTTGCTCTCTGGCGATAGCGCCAGCAGCTCCACAAATCCGATTGATGTCAAACCAGTTGTACCAGCATCttcaccaccaccaccaccacctccaccaGCACTACCAgtaacagctacagctacagctgcagctgcatctgCAGCGGGCGCAATTAAATCAACAACAGCCAAAGCTGCgttgcccagcagcagcaacagcagcagcaataccaGCTgcggcaataacaacaacaacaacaacaacaaattgagcaATCCACCGATAAAGGCAGTCAAAAGCGCGCCACCCACGACTGAGGCGCCAGCCAACACATCAAACACACCCACCACAAGCAACAGCGTCGGCGCCATCTATTCCGACTATCGCTACGAGCAGCaaacccagcagcagcagcagacgccaACGGGCACAACTGCGCTGCAGAGCTTTGCACGTGGCGCCACCACCCTGGTCATACCACAGGCAccacaccagcagcagcagcaacagcagcatcagtatCTGCCCTCACAGCAGCAGGCTGCCCACTTTGCCCaccttcagcagcagcagcagcagccggccCTGAAGTACACCTATGCAGCAGCGCTGCCTCCACCGCCACCGCTGCAGCTCTTTGCGCAGCAGGCGACAGCAACGCCATCACATCAGAAGCCACCGCCCGCCTATGGCGCCGCCATCAGTCAAATTCGATCTCAGCACAACcaaaacaagcagcagcaacaacaacagcagcagcagcaacaacaacaacaacaacaacaacaacaacaacagcaacagccacagcaacacaTAACCTTACAACATAATTTGAACCTTGCACCACCGAGTGGCAAACATAGTAAAATTCATACGGATATCTTCCTGAATCCACctccaccgccaccgccacagCTCACAATTCCGTCAGCATTGTCGACTGCCTCACTAAGACTGCAATATCCGCCACAGCATCAACAATCCCTAGCAgcatccagcagcagcaacagtagcggcagcggcagcgggaGCGGCGGCggtaatagcagcagcagcagcagcaacagtaattACGCCGCCGCTAGCTGCTCCGCAGCCAATGCGTCGTCCTCCTTTGCCATGGGACGCGCCAGTAGCAGTCGCCAGGCAACCAATTCCCCCTTTGGTGCGCTGCTGAATGCTGCAGCACAAGCCGCCTGCGCCTCGCCCGCCTCGTCCAGTGCATCGGTGCTGCGCTACGCCGAGTCGCCAGTGGCTCACTACTTGGAGCGAGACAATGGCGACTTCATAGTCCAGGAAACGCCCAAGCACATTGTCGAGTGCGTGGAGAAGGAGGACGGCGAATTCTCGGTGATTGAGCGCATTTATCAGTCGCCGCCCAGCGTGCTGCATATACATGACGATGACGAAGATGACGAGGAGGAAGACGAAGAGGCGGATGGCAAGGGCTGGGCGAACAGCGATGCTGAGGATCATTTGAAACTGGAGGATCATGTAGAAGATGGCGACGATGAGCATGAGGATAGTCGCAGCAGAGCTTCACACAAGGCCACAACGAAAAAGTCACGCAAAGCTAAGGCAACTGGACGGAAGCACAAAAGGGTCAACAAGCATCAGCCGGACGATGAGGATGACTTCATGAGCAtaggcagcagctgcgccgAGAGCGAGCATCAgttggagcaacagcaacagcaggcacAGCAATCCCATGTGCAGCAAGCAACGTCGCCCGCTCCTGGGCAACTGTCCACGGCACCGTCGACTagtggagctgcagctgcagccgccgccgccgcctctAGCACCACCAGCTCGACCAAGTCCAAAAAGAATCGTGTGACCGTGCTCAGCGATGTGCCGCTCAACATGAACGAGTATCTGGATCTAGTGGGCAACATTGTGGCCTCCAGTCGCATTAGTGCCACGCGTCCGTTTGCCGCTGTTGCGCCCATACCCTTGGTCAAAGTGGAGAAGGAGGAGCCCATGGATGACTACGATACAGTGAGGGAGGAGATGCAGGCCATAGAGCAGAAGCATAGCCTAGAGCAtgccagtggcagcagcagcagcaacagtggcCATGGCACCACCAGTGTCATTCGCATggccagcaccagcagcagcggcgccgCCACCAGCACCAATGTGGCCAACGACGATCTCACGCAACCGCCGCCCATGAAAGTGGAGGTGGAGCCGACGGTGCTGCTGCCGCAACGCTTCTCGGCACCGGCGCAGCATCGCGGGCCCAAGAAGTTAGTCATCAAGCCAAAGGTCACGGGGACGGCGTCGACGTCAGCAACGACCAAAAAGACTGATAACAGCGCTgccagtagcagcagcggcggcggcagcggcagcagcagtagcagcagcaactgcgccgAACCACTCAGCATATCATCGAAAGCAGCCGCAGAGCCAGTGCAGATCAAGAGCGAGACTGGGGAGCATGTCTCCAGCAGTGGCAGCATATTGGAGAAACATCTGACCAACAGCTACGCCGTCCAGCAGGCACGCAAGCACTCTGCAGTCAACGACGATGATGCACGCGTTCTGCTGGAGTTTGCCAACTcgaagcagcagccgccggcGGGCAACAGTAATCAGACAACGTTTGTGGTGAATGCGGCCAGCTTTGCCTCGGCGGGCTCCGTCTTTGctagtggcagcagcagcagcaatggcagctgcaacggcaacggcaacggtgTGCAGAAATCTGTCAAACCGGGCGACGAGTACATTCTGCCAGATAACAATCTAGAGGTGGATGAAATTGTGATATCCTCCTCGTCTTCCTATGCCTCCGACTCGCAGCACGAGcacttgcagctgcagcagcagcaacagtcgcaaTCGCAGCAatcacagctgcagcaacaacagccgccgGCACAGCAAGCCGTGCAGcaagggcagcagcagccgtccTCCTTCACAgactttaattttctataccATCAGCATGGAACcacatctgcagcagcagcagcaacaacaacggcggcagcagcagcagcagcaacagcttcaaCCTTTGCGCCATTtggcatgcagcagcagcagcagcaagtgctgCAGCATCCACAACATGGCTCGAGCGAGGCCACCAATGCCGCCACGCTGGCCTCCTCCTCGAGTAACTCATCAGTCCTGGATCAGGATTGCTCCATGAATGCATCATTTCGCGtgggcaaacaacaacaatccacAATGGGCGCCTGGTatcagtcgcagtcgcagcagccgcATCCACAGCCCAGCACTTCGCATAGCTCCAATGTGGAGCAGTCGAGCAATTTCATAGCCGCACTTGCGGCTGTGGAATGCTGCAGCGTGGCTGCTGTGGACAGCGATGTGAGCGAGGCCAAGTACTTGGATCTGGATGCTTGCAAGCGGGAACAATtaagcaatagcagcagccaTTTACCCTCGGCCTCTGCATCCACCACATCCTCATCCTTTGCGGCTGCCGCCACGGAGAGCAGTTTGGTTGGCGGCCTCGGTCTGAACATACGCACCGATGAGAAAATGCCCGCCAAGGGTGAGATCTCCGAGCAGGAGAGCAACTGTGACATTGAGAACTCTTGGAGTCAATCGATGTACGGCGACTTGTCACAGCGTTACTTTAGAAATCAGTTTGCGGATGGCTACAATCAGCAGCTGGCCGATTGGCGCCACGATTACTATCCGGCGCAGGATCTcagtggccagcagcagctggagcgtGAGCAGAAGCGCTTTGATTTCAATGCTGTCGCTGCGGAGTATGCGCATCCTGGCCAGCTGGATGCCTCTCCAGGCTCGACTAGAAACAATCATTTGCTGGATGCACAGCCCACCACTTCCTCGTCGTCATCGGCTTTGTTGGCTGGTCCACCCATAGCCTCGACATCGCGCGCAGCtgctgaagctgaggctgtggcagcagctcTGGCGCAGCGGAAGCCACCGCGTCGCAAGATCTACAAGTGTCCACACTGTGTGGCCATCTTTGAGAAGCTAAAGGAGCGCAATGCGCACATGATTGGCGAGCACAACTATGTGCGCCAGAATCGACGACTCATTTGCACTCAGGCGTTGGTCAACAGCGCCTTGACTGAGCcacaggagcagcaggcgcaggggcaacagcagcagcatcaattgCTGCAGGCAGCGGGGCATAGCACTGGTGACATTATGCACGAGGATTCCAAGGATGGCATCGTAAAGATTAAGCAGGAGCACTGCCACGATAAGCAGGATGCTTCGGAGCAACTGCTGGGCCATTCAGAGTTGCCCGATGTCAAGGATTCCGGTCTGCTCAATGGTAGCGATGAGAATGGACGTGATGCGGACATGAAACCACCGGCGGGCGTTGCAGACCTGGACGAAAAGCCGACCATACCGCCCTTGGCCATGACCACGCCAGCGGCCAAGCTGGCTGCTCTATATCGCATGCTTATTGCGTACAACGAGTCCAAGCTGGGCCAGGAGCGTAACAATCTCAGTGAACTGGAACAAAAGGCAATGGAGAAGTCCATCTTTCTATGCTATGTATGCCGCACCGATTTCCCCTCTGTCAAGCTGTACGATGCCCATCTGACTGAGCATCCCGCCGAGTGTTTCACCTGTGGCAAGAAATTCTATCGCTGGAAGAACTTCTCGCTGCATCTAAAGCGTCATCTGGGCTGGAAGGAGTTTGGCTGCTACATCTGCGACAAGAAGTTCGTGGTGCGCAGCGCCCTGGTGGAGCACATGCGCATGCACACGGGCCACACGCCGCTCAAGTGCAAGATATGCGGCAAGAAATTCAAGCGATATTCGAATCTAACGCAACATCGGAAGCGTCACACCAAGATTCTGGTGCGCAAGAAGGAGTATGTCTGCCATTGCGGCGAGGTATTGCCTTCGAAGGCGCGCTTCCTGTGGCACAAGGAGACGCACGACTTGAAACCCAAATGCTGTCCCTATTGCTGCGATCGCTTTGTGCACGCCAATTCGCTGCGCCGGCACATTCGTCTGGCCCACTCGGATAAGTTTGACTATGCTGAGCCCATGGAGTGTCCCATGTGCAAGCAGATCTTTGCCAAGACCTCGATCAAGGCGCACATGGCAACGCATTCGACAGATCCGCAATACGATTGCGCCATATGCAACAAGAGCTTCTCCACCAAATGGAATCTCAAGATTCACTCGTGGGTGCATGCGAATCGCACAGCCAAACCGTTCAAGTGCGAGTACTGCCCCAAGGCTTTCGTGCGTGAGCTGGACTTCAAGAATCACATGAATGCACACAAACAGATCAAGCCCTACACGTGCGAGTACTGTGGCTGCAAGTTCATACGCAAATACAACTATATGCGACATCGACGGGAGCATCATGGCAACAAGAAGTTCACCTGCGACCAGTGCGACAAGTCTTTCCATCGGCATTATTATCTGATTGAGCATCGGCGCATCCATACGGGCGAGCGTCCATTCCACTGCACCATCTGTGGCAAGAGCTCGACGACTAAGACCAATCATAATAAGCATCTGAAGATTCATCATTCGCGGGATCCATTCACCGTGGAGGTTTAA
- Protein Sequence
- MVDSVQCPVCTLYLHAGMNLSDHLETHPKEQVIKALVQMTIVSNNGMGSTLAAALLSGDSASSSTNPIDVKPVVPASSPPPPPPPPALPVTATATAAAASAAGAIKSTTAKAALPSSSNSSSNTSCGNNNNNNNNKLSNPPIKAVKSAPPTTEAPANTSNTPTTSNSVGAIYSDYRYEQQTQQQQQTPTGTTALQSFARGATTLVIPQAPHQQQQQQQHQYLPSQQQAAHFAHLQQQQQQPALKYTYAAALPPPPPLQLFAQQATATPSHQKPPPAYGAAISQIRSQHNQNKQQQQQQQQQQQQQQQQQQQQQQQPQQHITLQHNLNLAPPSGKHSKIHTDIFLNPPPPPPPQLTIPSALSTASLRLQYPPQHQQSLAASSSSNSSGSGSGSGGGNSSSSSSNSNYAAASCSAANASSSFAMGRASSSRQATNSPFGALLNAAAQAACASPASSSASVLRYAESPVAHYLERDNGDFIVQETPKHIVECVEKEDGEFSVIERIYQSPPSVLHIHDDDEDDEEEDEEADGKGWANSDAEDHLKLEDHVEDGDDEHEDSRSRASHKATTKKSRKAKATGRKHKRVNKHQPDDEDDFMSIGSSCAESEHQLEQQQQQAQQSHVQQATSPAPGQLSTAPSTSGAAAAAAAAASSTTSSTKSKKNRVTVLSDVPLNMNEYLDLVGNIVASSRISATRPFAAVAPIPLVKVEKEEPMDDYDTVREEMQAIEQKHSLEHASGSSSSNSGHGTTSVIRMASTSSSGAATSTNVANDDLTQPPPMKVEVEPTVLLPQRFSAPAQHRGPKKLVIKPKVTGTASTSATTKKTDNSAASSSSGGGSGSSSSSSNCAEPLSISSKAAAEPVQIKSETGEHVSSSGSILEKHLTNSYAVQQARKHSAVNDDDARVLLEFANSKQQPPAGNSNQTTFVVNAASFASAGSVFASGSSSSNGSCNGNGNGVQKSVKPGDEYILPDNNLEVDEIVISSSSSYASDSQHEHLQLQQQQQSQSQQSQLQQQQPPAQQAVQQGQQQPSSFTDFNFLYHQHGTTSAAAAATTTAAAAAAATASTFAPFGMQQQQQQVLQHPQHGSSEATNAATLASSSSNSSVLDQDCSMNASFRVGKQQQSTMGAWYQSQSQQPHPQPSTSHSSNVEQSSNFIAALAAVECCSVAAVDSDVSEAKYLDLDACKREQLSNSSSHLPSASASTTSSSFAAAATESSLVGGLGLNIRTDEKMPAKGEISEQESNCDIENSWSQSMYGDLSQRYFRNQFADGYNQQLADWRHDYYPAQDLSGQQQLEREQKRFDFNAVAAEYAHPGQLDASPGSTRNNHLLDAQPTTSSSSSALLAGPPIASTSRAAAEAEAVAAALAQRKPPRRKIYKCPHCVAIFEKLKERNAHMIGEHNYVRQNRRLICTQALVNSALTEPQEQQAQGQQQQHQLLQAAGHSTGDIMHEDSKDGIVKIKQEHCHDKQDASEQLLGHSELPDVKDSGLLNGSDENGRDADMKPPAGVADLDEKPTIPPLAMTTPAAKLAALYRMLIAYNESKLGQERNNLSELEQKAMEKSIFLCYVCRTDFPSVKLYDAHLTEHPAECFTCGKKFYRWKNFSLHLKRHLGWKEFGCYICDKKFVVRSALVEHMRMHTGHTPLKCKICGKKFKRYSNLTQHRKRHTKILVRKKEYVCHCGEVLPSKARFLWHKETHDLKPKCCPYCCDRFVHANSLRRHIRLAHSDKFDYAEPMECPMCKQIFAKTSIKAHMATHSTDPQYDCAICNKSFSTKWNLKIHSWVHANRTAKPFKCEYCPKAFVRELDFKNHMNAHKQIKPYTCEYCGCKFIRKYNYMRHRREHHGNKKFTCDQCDKSFHRHYYLIEHRRIHTGERPFHCTICGKSSTTKTNHNKHLKIHHSRDPFTVEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00516419;
- 90% Identity
- -
- 80% Identity
- -