Dsta010201.2
Basic Information
- Insect
- Drosophila stalkeri
- Gene Symbol
- -
- Assembly
- GCA_035047405.1
- Location
- JAWNPR010000090.1:11905508-11913944[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00024 0.018 15.6 3.4 1 23 287 309 287 309 0.98 2 11 0.0012 0.086 13.4 10.5 1 23 316 338 316 338 0.96 3 11 0.00012 0.0087 16.6 6.5 1 23 344 366 344 366 0.98 4 11 0.00036 0.026 15.0 2.3 1 23 372 394 372 394 0.95 5 11 2.6e-05 0.0019 18.6 0.5 1 23 400 422 400 422 0.97 6 11 1.7e-05 0.0013 19.2 0.1 1 23 428 450 428 450 0.98 7 11 0.00015 0.011 16.3 2.0 1 23 455 478 455 478 0.97 8 11 0.061 4.4 8.0 0.3 1 23 484 507 484 507 0.94 9 11 0.00019 0.014 15.9 0.1 1 23 566 588 566 588 0.98 10 11 0.018 1.3 9.7 2.7 1 23 700 722 700 722 0.95 11 11 0.0052 0.38 11.4 4.9 5 23 735 753 727 753 0.92
Sequence Information
- Coding Sequence
- ATGTGCGCTGCACAGAGCAATCCGCCGCCCTTCGGCTATACTTGGGGTTTTGCAGACAACGGCAGCCGTGCCGCAGAATCAGTTTTGGAGATATCGCCAAATATTAACTACACTGTCAGTGGGGAATCGATGCCCTATCTGTTATCCACGGATGGATCATTGGCCGTACAAAAGGATGTTAAAGGTGCACTCGCCAGCAATAAGGGCAATGTCGTTCGTCGCATGTTCGTGGTGAACGATTCCTCGTTTGCGCCCGGAACACAAAGAGTAATTACCACAGGCGCCGCATCGACGGTGGTCAAAAAACAGGACTCTGGTCAACAGGTGTTGAGCATAAATTCGCTCGATAAGAACTATCTTTTGGTCGATCaggcaacagcggcagcagctgcggctgcggcagcaGGTGGAGGTGATCCGGCGAATGCTGCGCACCATCATGCACTGACAAATGGCAGCATTGTTGACACAAAAACTGGACAAACGGTATTAACCACATCGAGTGCCGCCGCTGCGGCCAAGTCGCATTTCGGCTCAATTGGAGCATTGCATCTCACCCAAGAGGAGTGCAATGAGATCCTAATCAAGCGCGCCATTGCAGCCGGCCACGGCCACCACcagacgcacacactcacCGCTGGCGACGGAGCCCACCACCATCATCATTCGACGGCGCCGGGCGCGACACCAATTCAAGTACAGAAAGTAATACAAGGACTCGAAGAGAACGAGGACTCGCAGGGCGACGCACCCAACTTAAAGTTGGAGCCAGGCACATTAGAATTGTCCCCAAAGACCGAACTACAGGAATCAATGCATTTCAGCGAAaCCGACGCCACCATCAAAAAGGAGCGCCCGTACAGTTGTGACGAGTGCGGTAAATCCTTTCTGCTCAAACATCATTTGACAACACACGCACGCGTGCACACAGGTGGCGAACGACCACATATTTGCACCCACTGCGGAAAAAGTTTTGCGCACAAACACTGTCTAAATACGCATCTGCTGCTTCACTCAACTGATCGGCCATATCAGTGTCAGGAGTGCAAGAAGAGCTTTACACTTAAGCATCATCTATTGACGCATTCGCGCGTCCACAGCCGGGAACGGCCATTTGTTTGCCAGGAGTGCGGACGATCATTTCCCCTCAAGCGTCATCTGGTGACGCACAGTAAATTTCACGCCGGCGAACGTCCCTACGTCTGCGAGGAATGCGGTGAGAGTTTCGCACAGGAGAATCACCTGATTATGCACTCGCGCTTTCATGGTTCATTGAATCCATTTGTTTGCGCTGATTGCGGAGCCTCGTTTCCTCGAAAGTTTCAATTGGTTAATCACGGTCGCATCCACGGCAAGATACCACACTCCTGCACAGTTTGTGGCAAAGAATTTCTACAGAAGCGCACACTAGTTTCCCACATGAGGCGTGTACACACAGGCGAGCAGGCGCACCCCTGCGTAAGCTGCGGCGAAGGTTTCCTCACCAAAGCAGAGCTGCATCAGCATGTGCGTGCAGCGCACAATGGCGTTAATCCCAATACGAGCAGTGCTACCATTATAGCCAATCAGCAGCAGCTCCAACAGCCACATCATCATCCTGGACATCCACAGACGATCACCGTTGTCAGCAATCCAGCTAATTCAACACTTCTCACCGTCTCCACAACCGATGCGAATGGTGTCACGCGTCCACAGTTCGTTTGCCGTGAATGTGGCAGCGCGTTCAATAGCCGCGAGGCGCTTGCCTTGCACTTGCGACTGCATACAGGCGACAAGAGCTTGATGACCGATCTGTGCGCCTTGACAGCTGCGCTGCCTGGTCACTTCTTGAGCACGGCCAGCCTTAATCCTGGCACTGTGGTCACGGCCAATCCAAACCTGGTGGGACAGAGTCCGGTGCCGGTGCAAATCATATCATCAACCGGTCAGGTGATGTCACAGACCACACTGGTGCAGGCCGCCAATTCGACCCATCCGCAAGCCGTTGTCACAGCCGTGCCCACAATGCCCGTCCACGGGCAACAGCATCTGCAGCAcgtccagcaacagcagcagcagcatgtggTCACCGTGTCGCCGGCCAACAAGCCTAAATCGCATTTCTGTGCCAGCTGCGGCAAAGGATTCGCTGCTAAGCACGGCTTAATGCAGCATAATCGCCGACATCCAAACGGCGGCTGCACGGTGCGCACCCATGTTTGCGAATGTGGAAAGGCGTTCTTCCAAAAGAATCATCTGATGCTGCATCAGCGCCAGCATTTGGAAACAAAGCCAGCCATATCGCAGCAACAGGAAGCCgaggtgcagcagcagcaacaagcgcAGGCACAAGCTGCagtcgctgccgccgccgctgcggGTCAACAACCTGCTCAGGTGGAGGTGCAAATCGTATCCagtggccatggccatggcaaGGTCATCAAATACGAGATCTGTCGCAATGTTCTacaggaggagcagcaacaacagcagcagcagcaacagcagagctCCATGCATACAGaataa
- Protein Sequence
- MCAAQSNPPPFGYTWGFADNGSRAAESVLEISPNINYTVSGESMPYLLSTDGSLAVQKDVKGALASNKGNVVRRMFVVNDSSFAPGTQRVITTGAASTVVKKQDSGQQVLSINSLDKNYLLVDQATAAAAAAAAAGGGDPANAAHHHALTNGSIVDTKTGQTVLTTSSAAAAAKSHFGSIGALHLTQEECNEILIKRAIAAGHGHHQTHTLTAGDGAHHHHHSTAPGATPIQVQKVIQGLEENEDSQGDAPNLKLEPGTLELSPKTELQESMHFSETDATIKKERPYSCDECGKSFLLKHHLTTHARVHTGGERPHICTHCGKSFAHKHCLNTHLLLHSTDRPYQCQECKKSFTLKHHLLTHSRVHSRERPFVCQECGRSFPLKRHLVTHSKFHAGERPYVCEECGESFAQENHLIMHSRFHGSLNPFVCADCGASFPRKFQLVNHGRIHGKIPHSCTVCGKEFLQKRTLVSHMRRVHTGEQAHPCVSCGEGFLTKAELHQHVRAAHNGVNPNTSSATIIANQQQLQQPHHHPGHPQTITVVSNPANSTLLTVSTTDANGVTRPQFVCRECGSAFNSREALALHLRLHTGDKSLMTDLCALTAALPGHFLSTASLNPGTVVTANPNLVGQSPVPVQIISSTGQVMSQTTLVQAANSTHPQAVVTAVPTMPVHGQQHLQHVQQQQQQHVVTVSPANKPKSHFCASCGKGFAAKHGLMQHNRRHPNGGCTVRTHVCECGKAFFQKNHLMLHQRQHLETKPAISQQQEAEVQQQQQAQAQAAVAAAAAAGQQPAQVEVQIVSSGHGHGKVIKYEICRNVLQEEQQQQQQQQQQSSMHTE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00575764;
- 90% Identity
- iTF_00803779;
- 80% Identity
- -