Basic Information

Insect: Drosophila stalkeri
Gene Symbol: -
Assembly: GCA_035047405.1
Location: JAWNPR010000142.1:13706793-13711432[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 26 0.00099 0.072 13.7 1.7 1 23 220 242 220 242 0.97

2 26 0.058 4.3 8.1 2.8 1 23 248 270 248 270 0.97

3 26 0.01 0.76 10.4 0.3 2 23 302 323 302 323 0.95

4 26 0.00036 0.027 15.0 2.0 1 23 398 421 398 421 0.94

5 26 0.46 33 5.3 0.5 2 22 432 452 431 452 0.96

6 26 0.6 44 4.9 0.7 1 20 461 480 461 482 0.92

7 26 0.37 27 5.6 0.9 2 23 496 517 495 517 0.97

8 26 1 75 4.2 5.2 1 23 597 620 597 620 0.94

9 26 0.001 0.076 13.6 0.1 1 22 629 650 629 650 0.96

10 26 0.014 1 10.0 1.2 1 23 659 682 659 682 0.96

11 26 0.00055 0.04 14.5 0.1 2 23 714 735 713 735 0.97

12 26 1.4e-05 0.001 19.5 5.7 1 23 743 765 743 765 0.99

13 26 0.023 1.6 9.4 1.2 1 23 913 936 913 936 0.92

14 26 0.0093 0.68 10.6 0.2 2 22 944 964 944 964 0.95

15 26 1.5 1.1e+02 3.7 0.7 1 23 973 996 973 996 0.86

16 26 1.1e-05 0.00078 19.8 1.9 1 23 1021 1043 1021 1043 0.97

17 26 0.00014 0.01 16.3 0.9 1 23 1050 1072 1050 1072 0.98

18 26 0.012 0.89 10.2 0.0 2 21 1099 1118 1098 1119 0.94

19 26 0.013 0.95 10.1 4.3 1 23 1164 1187 1164 1187 0.96

20 26 0.0071 0.52 11.0 0.9 1 23 1224 1247 1224 1247 0.95

21 26 0.0044 0.32 11.6 3.2 1 23 1275 1298 1275 1298 0.98

22 26 1.4e-05 0.00099 19.5 0.1 2 23 1326 1347 1325 1347 0.95

23 26 4.6e-05 0.0034 17.8 2.9 1 23 1353 1375 1353 1375 0.99

24 26 2.5e-06 0.00018 21.8 2.3 1 23 1381 1403 1381 1403 0.98

25 26 5.7e-08 4.2e-06 27.0 2.4 1 23 1409 1431 1409 1431 0.99

26 26 0.00069 0.05 14.1 0.3 1 21 1437 1457 1437 1461 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	26	0.00099	0.072	13.7	1.7	1	23	220	242	220	242	0.97
2	26	0.058	4.3	8.1	2.8	1	23	248	270	248	270	0.97
3	26	0.01	0.76	10.4	0.3	2	23	302	323	302	323	0.95
4	26	0.00036	0.027	15.0	2.0	1	23	398	421	398	421	0.94
5	26	0.46	33	5.3	0.5	2	22	432	452	431	452	0.96
6	26	0.6	44	4.9	0.7	1	20	461	480	461	482	0.92
7	26	0.37	27	5.6	0.9	2	23	496	517	495	517	0.97
8	26	1	75	4.2	5.2	1	23	597	620	597	620	0.94
9	26	0.001	0.076	13.6	0.1	1	22	629	650	629	650	0.96
10	26	0.014	1	10.0	1.2	1	23	659	682	659	682	0.96
11	26	0.00055	0.04	14.5	0.1	2	23	714	735	713	735	0.97
12	26	1.4e-05	0.001	19.5	5.7	1	23	743	765	743	765	0.99
13	26	0.023	1.6	9.4	1.2	1	23	913	936	913	936	0.92
14	26	0.0093	0.68	10.6	0.2	2	22	944	964	944	964	0.95
15	26	1.5	1.1e+02	3.7	0.7	1	23	973	996	973	996	0.86
16	26	1.1e-05	0.00078	19.8	1.9	1	23	1021	1043	1021	1043	0.97
17	26	0.00014	0.01	16.3	0.9	1	23	1050	1072	1050	1072	0.98
18	26	0.012	0.89	10.2	0.0	2	21	1099	1118	1098	1119	0.94
19	26	0.013	0.95	10.1	4.3	1	23	1164	1187	1164	1187	0.96
20	26	0.0071	0.52	11.0	0.9	1	23	1224	1247	1224	1247	0.95
21	26	0.0044	0.32	11.6	3.2	1	23	1275	1298	1275	1298	0.98
22	26	1.4e-05	0.00099	19.5	0.1	2	23	1326	1347	1325	1347	0.95
23	26	4.6e-05	0.0034	17.8	2.9	1	23	1353	1375	1353	1375	0.99
24	26	2.5e-06	0.00018	21.8	2.3	1	23	1381	1403	1381	1403	0.98
25	26	5.7e-08	4.2e-06	27.0	2.4	1	23	1409	1431	1409	1431	0.99
26	26	0.00069	0.05	14.1	0.3	1	21	1437	1457	1437	1461	0.91

Sequence Information

Coding Sequence: ATGCTGCCAACAGATATTTGCCGTACATGCACATTGCACGATGAAAGTTTGCTTCCACTTGCGACCCGTActgataaatatgcaaataaaagtttaaatgaCATGTTACTCGAATTGACACAAAATGATCCCCTGCAGGAGCATACGGATGATAGTTTGCCACAGAACTTGTGTATGTGCTGCTTACACAAATTGGAGGCTGCTTATGCGTTTGTACTGCAGGCTCGCCAAGCTCAAGAACAATTTTTGCAACAGCTGCGCAAAGGCTTGCAGACGCAGTGCTTGGAAGAGATACCCATAGACATTAACTTGCAGCACATAAAAACCGAAACGGTCGTTGATATGCAACTCCCTAGCAAAGCCAAAAGTGAAGAGGATGAGGTGGATGGTAAAGAGAGGGATCAAGAGATGGCAGCAGTATCTATTCCAGTTCTGAAATGGCAACCAGACAGCGACAGTGAGAGCAATCAGACAGATGTTGATGGCGATGACGTGGATTTTAAGCCCAAGCAGTTACGACGAAGCTCACGAAAAGCCAAAGCCTGCACAGTTAGCGAAAATGAAGCAACATCTGCCAATGCTTCCTTGCCTATCAAACGGCGCCGTGGTCGCCCAGCGCGTCTactcaaaaagaaaactatcaACGAAGAGGGACGGCATGTTTGTGAGGTTTGTGGAAAGAGCTTCTCGTGGTATCGTGATATGCAACGCCACTCGCGTATGCACTTTGAACAAGCAACATTCTCGTGTGACAGTTGTGGAAAGAGCTTCTTACGCAAAGACAAATTCATGTTTCATCTGCGTTCGCACGAAAAGCTTGTAGCCAAGTCTCAGGCCATGCAATTCAGCAGCGAATGGCGCTTCGCTGAACGCCTCTACAGCTCCGGCCGGCTCAAACGTGCAGAGTGCAAGCTGTGCGGCTTAAAATACCAGCGTATAGGACAGCTGCGGGACCATATGGCATTCCACAAGAGCATTGAGACTTTGTCGAAACTGACACTGGAAAGTGATGTTGTCATGGAACAGTTTGCTAAAGAACAGCAGCAATCCGACTTGGAGCTGATCAAGCAACAAGTGTGTACAGACATTACCAAAGGATGCGGTCATCTGGACAAATACTGCGTTGTGGTCAACTCGTACGGCTATGAGCTCAGTCTTAGCGATTCAGACGAAGATGCAGCTGAACCTAAATACCAGTGTCAGATGTGTAAAATAAACTTCACGCGCAAGTATCGCCTAATGCGGCACACACTGGAGGAACACACACAGGCGGACACAGCAGTATCTTTGCAACGCTGTGATGTTTGTCAAATTGGTTTTGTCTGTGCCAAAATGTTGGAGCAACATCAACGGACGCAATGCCTTAATAAACTGAAGCGTTACAACTGTCCCAATTGCCCAGGGAAATTTACTTGGTTGCAGAACCTGAAGCAGCATGCATGCTCGCAATATATAAAACAGCACGACgggcaacgacaacaaaaacagtgTTGTCTCTGTGATACCCAAGTCGACAGCATGTTCGAATTACGTGCCCATTTGCTTATCCATCAAGATGGACGCACTGGCATACATCCAGAGCAGCAGGCTACCTTCTTTCGCACCTACTATCCCAATGGCCTTGACTGCAGTTTGTCTGAGCTGAGCGCACGAATAGCTGCCGATTTCCAGGCGGAAGACTATGGGCGATATTTTAATGCCGGAACGAATAACGGCGAGGAGCTCGATTTCTTTGCCTCGGACTCTGATTTATGTGAAGCGGACCATCTGAGTTCTAATAGTACGCTACACATATGTTGCCTGTGTGGCGAGACGAAAACACGCCGGAGTCAATTGCTGGAGCATCAGCATGTGCAGCATAGTGAGGGAATAGAGAGGTTACCATACGTCTGTGACGTCTGCAATTTGAGTTTTGTAGCTAAGGCGCTGCTCCAACAGCATCGCCGACGAGTCTGTGCCAAGCAGCATGCCAAGTACGACTGCCAGCAATGTAATCAGCGCTTTTACTGGCTTTCCAATTATGAGTTGCATATGCGTCTTCAACACGAGACTCAGGCTGAGCTGCAGGCGGACGTTGTCAATGGACAGGAACGGCAGTCAAGCATGCGGAGCAAGCGCCAGTCAAATGGTCCCAAGTTGCAGTGCGGCGAATGCGAAAAGGTGTTCATATGGCCCAAGGATCTGACTCGTCACAAGCGCATACACCAGCCACAGGCTTTGGCACAATATCAATGTTTGCACTGTGACCGCAAGTTCCATCGCAAGGATGGGCTTAAGTCCCATATGCGAGTGCATGGCGAACAGAAGATTGATGCATCGGTTGCCAGCGAGCAAGTTCCATCCATGCTGCAGCGCATGCCAATGTTGCTGACCCAACTGTGTCGACCTCATGGCTGCAAGCAAATTCAATGCATGATATGTCTCTCGCAGCATATCAAGATATCTGATCTACGTACGCATTTGATTAATCATCAGTATTCGGTTCAGTTTGAAGAGGAGCGGTGCCAATCGGAAAGCATAGCGAGCATATCACGCTCTCTGTATCCAGAACTAACCACACctttggagcagcagcaattaaTCGAACGCATTCAAAGTGATGTGACAAAAGGCGTGGAGCTCGAAAGATTCATATCCATTACCAACGAGGCGGGTATTGAGCTCAGTCTGGACACGAGCGAAACGGAAACCGATTCGGACTCTGCTGAGACAGTTAAAAGCAACAGCGGACAAGTCTATAGCTGTGAGCTGTGCCAGCTGAAGGTATCCCGCAAGCATCAGCTCTACGCTCATGAGCTGGAGCAGCATTCGTGGCAGCAGGCAACCCGGGTTTGTGGATATTGTCAGGCGAGATTCGTAAATGAGCAGTTACTAGAGCATCACTATCGGACGCTTTGTCGTAACGTGCACCGGCGTTTCTTTTGCCGTAAATGTCCGCTACGCTTCCGCTGGCGCGAGAATATGAAGCTGCATTCGGATGTGGCGCACAACGAAGCCAGAGGTGATCTATCGAACTCGGACATCAAGTTGAACGGGACGCGCCTCTTACCCATAGTTAGTTACGACTGCACTGAATGCAATCGTagctttaaaatgcaaaaggaTCTCACCAGACACACTCTCATGCATGCCCACGAGACGAGTATTTATCGTTGTCGCTGGTGTGCACGACGTTTCTATCGCCAGGCCAATCTGCTACAGCATATTGAGCGGCACGGCATTAGCGCCGAACAGCTGCCCTATGCTGAGGCTCTGCTCAATGCCAGTCGTCATCCGCACGGTCAGAAGTGTATCCAGTGCAAGGTGTGTAACGTGACCTACCCCACCATTGCTGCGCTGCGCGCGCATATACAATCAGCTCCAGCAGGCACACATCATGAGTATGGCTCGTTGCTCAATTATTCCATTACCAATCAGCTGGGATATGAGCTCCATCTAGAAGACTCGGAAACGGATGAGGAGACTAAGCCCCCTGGCACGCCCACGCACTACACCTGCAGCATATGCCAACTGCGCTGTGTGCGCAAGTTCGagctgcatcagcatcagcaagcGATGCATCGTTTGGAACGTATAACCGATGGTTGCGATGACTGCATCTTTAAGAGTGTTTCCGCAGATCTCATCGCCTATCATCGACGCGTCTTGTGCAGTAATACGGagaaacatttcaaatgctcCAAGTGTGGCTACAAGTTTATGTGGGAAACGAATTTGTTGCAGCATATGGAGTTGCAGCACCCCAACAGCGAAAGTAGCGAATCGCATCAGAATGCAAGCACTTTGTGTGTTCAGGAGGTACCCAATGCAGAGTGCCAGATTTTTCAGTGCGGTCAGTGTCCTAGTAAATATAATCGCAAGGATCGCCTCACTGCGCATATAAAGAAATGTCATGCAACGGGAGCAAGTGGCCCCACGGATGCGGCAGCTAAGCTCATGAAGAATTCAAATGTGACCAAACATCAGAAAAGCTTTCTTTGTGCTTTCTGCGGCAAAGCGGTGAGCTCCTCCTCAAATCTGATTATACATATACGTCGTCATACTGGCGAGAAGCCCTTTAAATGTGACTACTGCGATATGGCATTTCCACGATCCTCTGATTTACAGTGCCATCGACGCACCCACACAGGCGAGCGGCCGCACGTTTGCACCGTTTGCAAGAAAGGCTTTGCCCGGTCCTATAAGCTGCAGCAACATATGCGCATCCACAATGGCGAACGACCATACAAGTGTACATATTGCGATAAGAGTTTTACTCAGTCAAATGATCTGACCCTTCACATTCGCCGGCACACCGGCGAGCGGCCCTATCAGTGCAACACTTGCGGCGAACGATTCATACAAGGCACAGCCCTGAAGAATCATCGCCTACAACAGGGACACCACGACCCGGAAGTGGACCAGGTCAAGGAAAACTAA
Protein Sequence: MLPTDICRTCTLHDESLLPLATRTDKYANKSLNDMLLELTQNDPLQEHTDDSLPQNLCMCCLHKLEAAYAFVLQARQAQEQFLQQLRKGLQTQCLEEIPIDINLQHIKTETVVDMQLPSKAKSEEDEVDGKERDQEMAAVSIPVLKWQPDSDSESNQTDVDGDDVDFKPKQLRRSSRKAKACTVSENEATSANASLPIKRRRGRPARLLKKKTINEEGRHVCEVCGKSFSWYRDMQRHSRMHFEQATFSCDSCGKSFLRKDKFMFHLRSHEKLVAKSQAMQFSSEWRFAERLYSSGRLKRAECKLCGLKYQRIGQLRDHMAFHKSIETLSKLTLESDVVMEQFAKEQQQSDLELIKQQVCTDITKGCGHLDKYCVVVNSYGYELSLSDSDEDAAEPKYQCQMCKINFTRKYRLMRHTLEEHTQADTAVSLQRCDVCQIGFVCAKMLEQHQRTQCLNKLKRYNCPNCPGKFTWLQNLKQHACSQYIKQHDGQRQQKQCCLCDTQVDSMFELRAHLLIHQDGRTGIHPEQQATFFRTYYPNGLDCSLSELSARIAADFQAEDYGRYFNAGTNNGEELDFFASDSDLCEADHLSSNSTLHICCLCGETKTRRSQLLEHQHVQHSEGIERLPYVCDVCNLSFVAKALLQQHRRRVCAKQHAKYDCQQCNQRFYWLSNYELHMRLQHETQAELQADVVNGQERQSSMRSKRQSNGPKLQCGECEKVFIWPKDLTRHKRIHQPQALAQYQCLHCDRKFHRKDGLKSHMRVHGEQKIDASVASEQVPSMLQRMPMLLTQLCRPHGCKQIQCMICLSQHIKISDLRTHLINHQYSVQFEEERCQSESIASISRSLYPELTTPLEQQQLIERIQSDVTKGVELERFISITNEAGIELSLDTSETETDSDSAETVKSNSGQVYSCELCQLKVSRKHQLYAHELEQHSWQQATRVCGYCQARFVNEQLLEHHYRTLCRNVHRRFFCRKCPLRFRWRENMKLHSDVAHNEARGDLSNSDIKLNGTRLLPIVSYDCTECNRSFKMQKDLTRHTLMHAHETSIYRCRWCARRFYRQANLLQHIERHGISAEQLPYAEALLNASRHPHGQKCIQCKVCNVTYPTIAALRAHIQSAPAGTHHEYGSLLNYSITNQLGYELHLEDSETDEETKPPGTPTHYTCSICQLRCVRKFELHQHQQAMHRLERITDGCDDCIFKSVSADLIAYHRRVLCSNTEKHFKCSKCGYKFMWETNLLQHMELQHPNSESSESHQNASTLCVQEVPNAECQIFQCGQCPSKYNRKDRLTAHIKKCHATGASGPTDAAAKLMKNSNVTKHQKSFLCAFCGKAVSSSSNLIIHIRRHTGEKPFKCDYCDMAFPRSSDLQCHRRTHTGERPHVCTVCKKGFARSYKLQQHMRIHNGERPYKCTYCDKSFTQSNDLTLHIRRHTGERPYQCNTCGERFIQGTALKNHRLQQGHHDPEVDQVKEN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00509945;
90% Identity: iTF_00493792;
80% Identity: -