Basic Information

Insect: Drosophila sordidula
Gene Symbol: Trl
Assembly: GCA_035047465.1
Location: JAWNPQ010000156.1:14670295-14677135[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 3.8e-43 3.2e-39 132.8 6.2 1 54 324 377 324 377 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	3.8e-43	3.2e-39	132.8	6.2	1	54	324	377	324	377	0.99

Sequence Information

Coding Sequence: ATGTCGTTGCCAATGAATTCGCTGTACTCGCTCACCTGGGGCGATTATGGCACGTCCCTGGTATCGGCCATACAATTGTTGCGCTGCCATGGCGACCTCGTCGATTGCACGTTGGCAGCCGGCGGACGCAGTTTTCCAGCCCACAAAATCGTGCTCTGTGCGGCTTCTCCATTTCTGCTGGACTTGCTAAAGAACACGCCATGCAAACATCCAGTTGTGATGTTGGCCGGCGTCAATGCAAACGACTTGGAAGCACTGCTGGAGTTTGTCTATCGGGGCGAAGTGAGCGTCGATCATGCGCAGCTGCCATCGCTGCTGCAGGCGGCGCAATGCCTCAATATTCAGGGGCTGGCACCGCAAACAGTGACGAAGGATGACTACACAACGCACTCGATACAACTGCAGCACATGATACCACAGCACCATGACCAGGACCAATTGATAGCGACCATTGCGACGGCACCGCAGCAAACTGTGCACGCGCAGGTTGTCGAGGATATACACCACCAAGGACAGATACTGCAGGCCACCACACAGACTAATGCCGCCGGACACCAGCAAACGATTGTGACAGCAGACGCATCCAAACACGATCAGGCAGTGATACAGAGTTTCTTGCCCGCACGCAAGCGCAAGCCGCGTGTCAAGAAAATGTCGCCAACTGCACCGAAGATAACCAAAATTGAAGGAATGGACACGATTATGGGCACACCGACTTCCTCCCACGTAGccgcacagcaacagcagcaagtggtgcagcaacagcaggtgCTTGATGAAAATGGGGCCGAAACGCAACTGTTAACCAGCACACCGATCATCAAGAGCGAAGGGCAAAAGGTCGAGACAATTGTCACCATGGACCCCAACAATATGATACCCGTGACTTCAGCGAATGCGGCAACTGGCGAAATAACAACTGCTTCCGGAACAACTGTAACGCccggcgccagcggcagcaccgCTACGCCCAAGGCCAAACGAACCAAGCATCCGCCTGGGACAGAAAAACCACGGTCACGCTCCCAATCGGAACAACCTGCTACTTGCCCCATTTGCTATGCCGTTATACGTCAATCGCGCAATTTGCGCCGCCATCTCGAGCTGCGGCACTTTGCCAAACCGGGCATCAAAAAGGAGAAGAAAAGTAAGTCCGGTAATGATACCACACTAGACACCACCGGTGAGCTCAATAACACAAGCGTGGGCGAAACCAACGTCACGGCGGGATCAGGGACAGGCTCAGCAACGGAAACGCCAGTTCGTGGCGGTGCTACACACTTACCAAGGGTCGTAGCCACGGGCACGCCCAACAGTAACACTATTATGGCCAGTACTGtgctgccacagcagcaactgcagcagcagcaccaccaaacgacgcaacaacagcatcagcaacagcaacaacagcaacaacagcaacaacagcaacaacaacaacaacaacacttgaACACATCAACACTTAGCAGCACGGGTGGCGGGCAAACGCATCTCATGGGCGTCAGTATCAAGCATGagggcggcggtggcagcagcagcggcgccgctgcgcagcaacagcagggcATGCAAAATGTTATACACATTGTGGCACCCAGTGGCAAGAAACCTGGCAGCAGCACACCCGGCTCTGTGCAGTCCCAGCCGGGCGGCAGTGGACCGCTGAGCTCCAGCGGAGTTGTTCCCCAAGTGCAAACAGTGCAGTCTCTACATCCGTTGCAAAGCGTGCAAGTCAAAAAGGACCCCGAtgcccaacagcaacaacaacaacagcagcagcagcagcagcagcagcagcagcaacagcagcagcaaacaatgACAGTAACCACCACAGCCGGGGGCCAAgtccaacagcagcaggtgcagcaggttcaagtgcaacagcagcagccactgcaGCACCATCAGATCATCGATTCGTCGGGCAACATGACAACGCCAACAACCAGCGCCCAAGCAGCCGCCCAGCAACAGGCGGCTAATCAACAGCTGGTGGCCCAGTCGGATGGCAGTGAGAGCGGCACGCCACTCTCTATAGCCCAGGTGCAAACGTTGCAGGGTCATCAGATCATTGGCAATTTGAATCAGGTGAATATGACTGATtttcaacaacagcaacaacaacaacagcagcagcaacagcagcagcaacaacaacaaacacaaccaCCACAGACGCTTTGA
Protein Sequence: MSLPMNSLYSLTWGDYGTSLVSAIQLLRCHGDLVDCTLAAGGRSFPAHKIVLCAASPFLLDLLKNTPCKHPVVMLAGVNANDLEALLEFVYRGEVSVDHAQLPSLLQAAQCLNIQGLAPQTVTKDDYTTHSIQLQHMIPQHHDQDQLIATIATAPQQTVHAQVVEDIHHQGQILQATTQTNAAGHQQTIVTADASKHDQAVIQSFLPARKRKPRVKKMSPTAPKITKIEGMDTIMGTPTSSHVAAQQQQQVVQQQQVLDENGAETQLLTSTPIIKSEGQKVETIVTMDPNNMIPVTSANAATGEITTASGTTVTPGASGSTATPKAKRTKHPPGTEKPRSRSQSEQPATCPICYAVIRQSRNLRRHLELRHFAKPGIKKEKKSKSGNDTTLDTTGELNNTSVGETNVTAGSGTGSATETPVRGGATHLPRVVATGTPNSNTIMASTVLPQQQLQQQHHQTTQQQHQQQQQQQQQQQQQQQQQQHLNTSTLSSTGGGQTHLMGVSIKHEGGGGSSSGAAAQQQQGMQNVIHIVAPSGKKPGSSTPGSVQSQPGGSGPLSSSGVVPQVQTVQSLHPLQSVQVKKDPDAQQQQQQQQQQQQQQQQQQQQQTMTVTTTAGGQVQQQQVQQVQVQQQQPLQHHQIIDSSGNMTTPTTSAQAAAQQQAANQQLVAQSDGSESGTPLSIAQVQTLQGHQIIGNLNQVNMTDFQQQQQQQQQQQQQQQQQQTQPPQTL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00598243; iTF_00477005; iTF_00476708; iTF_01556205; iTF_01556481; iTF_00572974; iTF_00572683; iTF_01549935; iTF_01549679; iTF_00490864; iTF_00491169; iTF_00608529; iTF_00608841; iTF_00546738; iTF_00547021; iTF_00569364; iTF_00569058; iTF_00585620; iTF_00585294; iTF_00526965; iTF_00526663; iTF_00502904; iTF_00502607; iTF_00506201; iTF_00506512; iTF_00537594; iTF_00537890; iTF_00528892; iTF_00529219; iTF_00532764; iTF_00532460; iTF_00531038; iTF_00531342; iTF_00509183; iTF_00509475; iTF_00586047; iTF_00586340; iTF_00602239; iTF_00601894; iTF_00614271; iTF_00614563;
90% Identity: iTF_00506201;
80% Identity: iTF_00598243;